RNA–Protein interactions for RNA: ENST00000464187.1

COL5A1-205, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 1,830 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-205ENST00000464187 SYNJ2O15056 1496 aa22.79■■□□□ 1.24
COL5A1-205ENST00000464187 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
COL5A1-205ENST00000464187 GRIN2AQ12879 1464 aa22.76■■□□□ 1.23
COL5A1-205ENST00000464187 FBLN2P98095 1184 aa22.75■■□□□ 1.23
COL5A1-205ENST00000464187 CTTNBP2Q8WZ74 1663 aa22.73■■□□□ 1.23
COL5A1-205ENST00000464187 ARHGAP35Q9NRY4 1499 aa22.69■■□□□ 1.22
COL5A1-205ENST00000464187 ARAP1Q96P48 1450 aa22.65■■□□□ 1.22
COL5A1-205ENST00000464187 VPS8Q8N3P4 1428 aa22.63■■□□□ 1.21
COL5A1-205ENST00000464187 KIAA0586Q9BVV6 1533 aa22.62■■□□□ 1.21
COL5A1-205ENST00000464187 IQGAP2Q13576 1575 aa22.62■■□□□ 1.21
COL5A1-205ENST00000464187 NUP160Q12769 1436 aa22.6■■□□□ 1.21
COL5A1-205ENST00000464187 CEP170Q5SW79 1584 aa22.6■■□□□ 1.21
COL5A1-205ENST00000464187 EFCAB5A4FU69 1503 aa22.59■■□□□ 1.21
COL5A1-205ENST00000464187 P3H3Q8IVL6 736 aa22.59■■□□□ 1.21
COL5A1-205ENST00000464187 FHOD3Q2V2M9 1422 aa22.53■■□□□ 1.2
COL5A1-205ENST00000464187 CHD1O14646 1710 aa22.52■■□□□ 1.2
COL5A1-205ENST00000464187 SAMD9Q5K651 1589 aa22.52■■□□□ 1.2
COL5A1-205ENST00000464187 UGGT2Q9NYU1 1516 aa22.51■■□□□ 1.19
COL5A1-205ENST00000464187 PPARGC1BQ86YN6 1023 aaKnown RBP22.5■■□□□ 1.19
COL5A1-205ENST00000464187 JPH4Q96JJ6 628 aa22.46■■□□□ 1.19
COL5A1-205ENST00000464187 APLP2Q06481 763 aa22.43■■□□□ 1.18
COL5A1-205ENST00000464187 DISP1Q96F81 1524 aa22.42■■□□□ 1.18
COL5A1-205ENST00000464187 FMN1Q68DA7 1419 aa22.42■■□□□ 1.18
COL5A1-205ENST00000464187 KIAA0556O60303 1618 aa22.39■■□□□ 1.17
COL5A1-205ENST00000464187 CARMIL2Q6F5E8 1435 aa22.35■■□□□ 1.17
COL5A1-205ENST00000464187 CASKIN1Q8WXD9 1431 aa22.34■■□□□ 1.17
COL5A1-205ENST00000464187 PCF11O94913 1555 aaKnown RBP22.34■■□□□ 1.17
COL5A1-205ENST00000464187 ATP1B4Q9UN42 357 aaPredicted RBP22.33■■□□□ 1.16
COL5A1-205ENST00000464187 TTBK1Q5TCY1 1321 aaPredicted RBP22.33■■□□□ 1.16
COL5A1-205ENST00000464187 FYCO1Q9BQS8 1478 aa22.32■■□□□ 1.16
COL5A1-205ENST00000464187 PRG4Q92954 1404 aaPredicted RBP22.31■■□□□ 1.16
COL5A1-205ENST00000464187 CLASP1Q7Z460 1538 aa22.31■■□□□ 1.16
COL5A1-205ENST00000464187 SHROOM2Q13796 1616 aa22.27■■□□□ 1.16
COL5A1-205ENST00000464187 KANK4Q5T7N3 995 aaPredicted RBP22.26■■□□□ 1.15
COL5A1-205ENST00000464187 ZEB1P37275 1124 aaPredicted RBP22.25■■□□□ 1.15
COL5A1-205ENST00000464187 OSCARQ8IYS5 282 aa22.25■■□□□ 1.15
COL5A1-205ENST00000464187 MAP3K1Q13233 1512 aa22.24■■□□□ 1.15
COL5A1-205ENST00000464187 TIAM1Q13009 1591 aa22.23■■□□□ 1.15
COL5A1-205ENST00000464187 HECW1Q76N89 1606 aa22.16■■□□□ 1.14
COL5A1-205ENST00000464187 PTPRGP23470 1445 aa22.16■■□□□ 1.14
COL5A1-205ENST00000464187 ERCC6L2Q5T890 1561 aa22.16■■□□□ 1.14
COL5A1-205ENST00000464187 PLB1Q6P1J6 1458 aa22.16■■□□□ 1.14
COL5A1-205ENST00000464187 LRRC9Q6ZRR7 1453 aa22.15■■□□□ 1.14
COL5A1-205ENST00000464187 CFAP43Q8NDM7 1665 aa22.15■■□□□ 1.14
COL5A1-205ENST00000464187 RAPGEF6Q8TEU7 1601 aa22.13■■□□□ 1.13
COL5A1-205ENST00000464187 CCDC18Q5T9S5 1454 aa22.13■■□□□ 1.13
COL5A1-205ENST00000464187 EPRSP07814 1512 aaKnown RBP22.12■■□□□ 1.13
COL5A1-205ENST00000464187 NUP153P49790 1475 aaKnown RBP22.11■■□□□ 1.13
COL5A1-205ENST00000464187 ARID3CA6NKF2 412 aa22.11■■□□□ 1.13
COL5A1-205ENST00000464187 LRRIQ1Q96JM4 1722 aa22.11■■□□□ 1.13
COL5A1-205ENST00000464187 ABCA8O94911 1581 aa22.07■■□□□ 1.12
COL5A1-205ENST00000464187 CDK13Q14004 1512 aaKnown RBP22.07■■□□□ 1.12
COL5A1-205ENST00000464187 MTUS2Q5JR59 1369 aa22.06■■□□□ 1.12
COL5A1-205ENST00000464187 UACAQ9BZF9 1416 aa22.02■■□□□ 1.12
COL5A1-205ENST00000464187 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.02■■□□□ 1.12
COL5A1-205ENST00000464187 HNRNPUL2Q1KMD3 747 aaKnown RBP22.02■■□□□ 1.12
COL5A1-205ENST00000464187 MAGI3Q5TCQ9 1506 aa22■■□□□ 1.11
COL5A1-205ENST00000464187 EHBP1L1Q8N3D4 1523 aa21.98■■□□□ 1.11
COL5A1-205ENST00000464187 CDK11AQ9UQ88 783 aaPredicted RBP21.97■■□□□ 1.11
COL5A1-205ENST00000464187 ATP10BO94823 1461 aa21.96■■□□□ 1.11
COL5A1-205ENST00000464187 PHLDB1Q86UU1 1377 aa21.95■■□□□ 1.11
COL5A1-205ENST00000464187 CCER1Q8TC90 406 aaPredicted RBP21.94■■□□□ 1.1
COL5A1-205ENST00000464187 ABCC2Q92887 1545 aa21.94■■□□□ 1.1
COL5A1-205ENST00000464187 RRBP1Q9P2E9 1410 aaKnown RBP21.92■■□□□ 1.1
COL5A1-205ENST00000464187 NCOA2Q15596 1464 aa21.92■■□□□ 1.1
COL5A1-205ENST00000464187 UHRF1BP1LA0JNW5 1464 aa21.9■■□□□ 1.1
COL5A1-205ENST00000464187 SUPT6HQ7KZ85 1726 aaKnown RBP21.89■■□□□ 1.09
COL5A1-205ENST00000464187 PLEKHD1A6NEE1 506 aa21.88■■□□□ 1.09
COL5A1-205ENST00000464187 TROQ12816 1431 aaPredicted RBP21.88■■□□□ 1.09
COL5A1-205ENST00000464187 CCNB3Q8WWL7 1395 aa21.88■■□□□ 1.09
COL5A1-205ENST00000464187 ARHGEF11O15085 1522 aa21.86■■□□□ 1.09
COL5A1-205ENST00000464187 KDM5BQ9UGL1 1544 aa21.82■■□□□ 1.08
COL5A1-205ENST00000464187 MYOM3Q5VTT5 1437 aa21.82■■□□□ 1.08
COL5A1-205ENST00000464187 ADCY10Q96PN6 1610 aa21.8■■□□□ 1.08
COL5A1-205ENST00000464187 FGD6Q6ZV73 1430 aa21.8■■□□□ 1.08
COL5A1-205ENST00000464187 FAM50AQ14320 339 aaKnown RBP21.77■■□□□ 1.08
COL5A1-205ENST00000464187 ZCCHC11Q5TAX3 1644 aaKnown RBP21.76■■□□□ 1.07
COL5A1-205ENST00000464187 KIF14Q15058 1648 aa21.75■■□□□ 1.07
COL5A1-205ENST00000464187 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.73■■□□□ 1.07
COL5A1-205ENST00000464187 RIMBP3CA6NJZ7 1639 aa21.72■■□□□ 1.07
COL5A1-205ENST00000464187 RIMBP3BA6NNM3 1639 aa21.72■■□□□ 1.07
COL5A1-205ENST00000464187 RIMBP3Q9UFD9 1639 aa21.72■■□□□ 1.07
COL5A1-205ENST00000464187 MIA2Q96PC5 1412 aa21.71■■□□□ 1.07
COL5A1-205ENST00000464187 ITGAEP38570 1179 aa21.71■■□□□ 1.07
COL5A1-205ENST00000464187 CYB5RLQ6IPT4 315 aa21.7■■□□□ 1.06
COL5A1-205ENST00000464187 ABCC10Q5T3U5 1492 aa21.69■■□□□ 1.06
COL5A1-205ENST00000464187 GPATCH8Q9UKJ3 1502 aaKnown RBP21.68■■□□□ 1.06
COL5A1-205ENST00000464187 NPM1P06748 294 aaKnown RBP eCLIP21.67■■□□□ 1.06
COL5A1-205ENST00000464187 KCNH8Q96L42 1107 aa21.67■■□□□ 1.06
COL5A1-205ENST00000464187 PTPN23Q9H3S7 1636 aa21.66■■□□□ 1.06
COL5A1-205ENST00000464187 CFDP1Q9UEE9 299 aaPredicted RBP21.65■■□□□ 1.06
COL5A1-205ENST00000464187 TCOF1Q13428 1488 aaKnown RBP21.65■■□□□ 1.06
COL5A1-205ENST00000464187 WDR7Q9Y4E6 1490 aa21.63■■□□□ 1.05
COL5A1-205ENST00000464187 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.61■■□□□ 1.05
COL5A1-205ENST00000464187 ASXL2Q76L83 1435 aa21.61■■□□□ 1.05
COL5A1-205ENST00000464187 ITSN2Q9NZM3 1697 aa21.61■■□□□ 1.05
COL5A1-205ENST00000464187 ZNF644Q9H582 1327 aaPredicted RBP21.6■■□□□ 1.05
COL5A1-205ENST00000464187 TTC37Q6PGP7 1564 aa21.58■■□□□ 1.04
COL5A1-205ENST00000464187 ZNF777Q9ULD5 760 aaPredicted RBP21.57■■□□□ 1.04
COL5A1-205ENST00000464187 CDC42BPAQ5VT25 1732 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms