RNA–Protein interactions for RNA: ENST00000462352.5

CPNE1-221, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-221ENST00000462352 SHROOM2Q13796 1616 aa19.4■□□□□ 0.7
CPNE1-221ENST00000462352 ARHGEF11O15085 1522 aa19.4■□□□□ 0.7
CPNE1-221ENST00000462352 JPH4Q96JJ6 628 aa19.39■□□□□ 0.69
CPNE1-221ENST00000462352 IQGAP2Q13576 1575 aa19.39■□□□□ 0.69
CPNE1-221ENST00000462352 GOLGA3Q08378 1498 aa19.38■□□□□ 0.69
CPNE1-221ENST00000462352 CTTNBP2Q8WZ74 1663 aa19.38■□□□□ 0.69
CPNE1-221ENST00000462352 EHMT2Q96KQ7 1210 aa19.37■□□□□ 0.69
CPNE1-221ENST00000462352 RIMBP3CA6NJZ7 1639 aa19.36■□□□□ 0.69
CPNE1-221ENST00000462352 RIMBP3BA6NNM3 1639 aa19.36■□□□□ 0.69
CPNE1-221ENST00000462352 RIMBP3Q9UFD9 1639 aa19.36■□□□□ 0.69
CPNE1-221ENST00000462352 PRG4Q92954 1404 aaPredicted RBP19.34■□□□□ 0.69
CPNE1-221ENST00000462352 ERCC6L2Q5T890 1561 aa19.32■□□□□ 0.68
CPNE1-221ENST00000462352 UBTFP17480 764 aaKnown RBP19.31■□□□□ 0.68
CPNE1-221ENST00000462352 UGGT2Q9NYU1 1516 aa19.29■□□□□ 0.68
CPNE1-221ENST00000462352 ARAP1Q96P48 1450 aa19.26■□□□□ 0.67
CPNE1-221ENST00000462352 DISP1Q96F81 1524 aa19.25■□□□□ 0.67
CPNE1-221ENST00000462352 CARMIL2Q6F5E8 1435 aa19.25■□□□□ 0.67
CPNE1-221ENST00000462352 KIAA0556O60303 1618 aa19.21■□□□□ 0.67
CPNE1-221ENST00000462352 CYB5RLQ6IPT4 315 aa19.2■□□□□ 0.66
CPNE1-221ENST00000462352 AEBP2Q6ZN18 517 aaPredicted RBP19.2■□□□□ 0.66
CPNE1-221ENST00000462352 RANGAP1P46060 587 aaPredicted RBP19.19■□□□□ 0.66
CPNE1-221ENST00000462352 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
CPNE1-221ENST00000462352 SAMD9Q5K651 1589 aa19.16■□□□□ 0.66
CPNE1-221ENST00000462352 LOC105371045A0A1W2PR82 267 aa19.16■□□□□ 0.66
CPNE1-221ENST00000462352 PTPRGP23470 1445 aa19.14■□□□□ 0.65
CPNE1-221ENST00000462352 TTBK1Q5TCY1 1321 aaPredicted RBP19.13■□□□□ 0.65
CPNE1-221ENST00000462352 P3H3Q8IVL6 736 aa19.12■□□□□ 0.65
CPNE1-221ENST00000462352 EFCAB5A4FU69 1503 aa19.11■□□□□ 0.65
CPNE1-221ENST00000462352 ARHGAP35Q9NRY4 1499 aa19.07■□□□□ 0.64
CPNE1-221ENST00000462352 FHOD3Q2V2M9 1422 aa19.07■□□□□ 0.64
CPNE1-221ENST00000462352 CLIP1P30622 1438 aa19.04■□□□□ 0.64
CPNE1-221ENST00000462352 UACAQ9BZF9 1416 aa19.02■□□□□ 0.64
CPNE1-221ENST00000462352 CEP162Q5TB80 1403 aa19.01■□□□□ 0.63
CPNE1-221ENST00000462352 ADCY10Q96PN6 1610 aa19■□□□□ 0.63
CPNE1-221ENST00000462352 PLB1Q6P1J6 1458 aa19■□□□□ 0.63
CPNE1-221ENST00000462352 UHRF1BP1LA0JNW5 1464 aa18.98■□□□□ 0.63
CPNE1-221ENST00000462352 ABCC2Q92887 1545 aa18.98■□□□□ 0.63
CPNE1-221ENST00000462352 ABCA8O94911 1581 aa18.98■□□□□ 0.63
CPNE1-221ENST00000462352 FMN1Q68DA7 1419 aa18.94■□□□□ 0.62
CPNE1-221ENST00000462352 RAPGEF6Q8TEU7 1601 aa18.92■□□□□ 0.62
CPNE1-221ENST00000462352 NPM1P06748 294 aaKnown RBP eCLIP18.91■□□□□ 0.62
CPNE1-221ENST00000462352 KDM5BQ9UGL1 1544 aa18.9■□□□□ 0.62
CPNE1-221ENST00000462352 NUP153P49790 1475 aaKnown RBP18.87■□□□□ 0.61
CPNE1-221ENST00000462352 ZCCHC11Q5TAX3 1644 aaKnown RBP18.85■□□□□ 0.61
CPNE1-221ENST00000462352 ARID3CA6NKF2 412 aa18.84■□□□□ 0.61
CPNE1-221ENST00000462352 MAPKBP1O60336 1514 aa18.84■□□□□ 0.61
CPNE1-221ENST00000462352 ATP10BO94823 1461 aa18.83■□□□□ 0.6
CPNE1-221ENST00000462352 CASKIN1Q8WXD9 1431 aa18.83■□□□□ 0.6
CPNE1-221ENST00000462352 HECW1Q76N89 1606 aa18.82■□□□□ 0.6
CPNE1-221ENST00000462352 PCF11O94913 1555 aaKnown RBP18.82■□□□□ 0.6
CPNE1-221ENST00000462352 ATP1B4Q9UN42 357 aaPredicted RBP18.81■□□□□ 0.6
CPNE1-221ENST00000462352 ASXL2Q76L83 1435 aa18.79■□□□□ 0.6
CPNE1-221ENST00000462352 FYCO1Q9BQS8 1478 aa18.78■□□□□ 0.6
CPNE1-221ENST00000462352 VPS8Q8N3P4 1428 aa18.77■□□□□ 0.6
CPNE1-221ENST00000462352 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.77■□□□□ 0.6
CPNE1-221ENST00000462352 HNRNPUL2Q1KMD3 747 aaKnown RBP18.77■□□□□ 0.6
CPNE1-221ENST00000462352 EPRSP07814 1512 aaKnown RBP18.77■□□□□ 0.6
CPNE1-221ENST00000462352 CDK13Q14004 1512 aaKnown RBP18.76■□□□□ 0.59
CPNE1-221ENST00000462352 WDR7Q9Y4E6 1490 aa18.73■□□□□ 0.59
CPNE1-221ENST00000462352 TRHP20396 242 aaPredicted RBP18.73■□□□□ 0.59
CPNE1-221ENST00000462352 LRRIQ1Q96JM4 1722 aa18.73■□□□□ 0.59
CPNE1-221ENST00000462352 ABCC10Q5T3U5 1492 aa18.72■□□□□ 0.59
CPNE1-221ENST00000462352 CCDC18Q5T9S5 1454 aa18.71■□□□□ 0.59
CPNE1-221ENST00000462352 DIP2BQ9P265 1576 aa18.7■□□□□ 0.58
CPNE1-221ENST00000462352 PLEKHD1A6NEE1 506 aa18.69■□□□□ 0.58
CPNE1-221ENST00000462352 FAM69CQ0P6D2 419 aa18.68■□□□□ 0.58
CPNE1-221ENST00000462352 KCNH8Q96L42 1107 aa18.67■□□□□ 0.58
CPNE1-221ENST00000462352 KIF13AQ9H1H9 1805 aa18.66■□□□□ 0.58
CPNE1-221ENST00000462352 CDK11AQ9UQ88 783 aaPredicted RBP18.66■□□□□ 0.58
CPNE1-221ENST00000462352 GLI2P10070 1586 aa18.64■□□□□ 0.58
CPNE1-221ENST00000462352 TROQ12816 1431 aaPredicted RBP18.61■□□□□ 0.57
CPNE1-221ENST00000462352 MAGI3Q5TCQ9 1506 aa18.6■□□□□ 0.57
CPNE1-221ENST00000462352 CFAP43Q8NDM7 1665 aa18.59■□□□□ 0.57
CPNE1-221ENST00000462352 TIAM1Q13009 1591 aa18.59■□□□□ 0.57
CPNE1-221ENST00000462352 MAP3K4Q9Y6R4 1608 aa18.56■□□□□ 0.56
CPNE1-221ENST00000462352 MAP3K1Q13233 1512 aa18.56■□□□□ 0.56
CPNE1-221ENST00000462352 ABCA9Q8IUA7 1624 aa18.56■□□□□ 0.56
CPNE1-221ENST00000462352 MTUS2Q5JR59 1369 aa18.55■□□□□ 0.56
CPNE1-221ENST00000462352 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.54■□□□□ 0.56
CPNE1-221ENST00000462352 KIF14Q15058 1648 aa18.54■□□□□ 0.56
CPNE1-221ENST00000462352 APLP2Q06481 763 aa18.54■□□□□ 0.56
CPNE1-221ENST00000462352 CD109Q6YHK3 1445 aa18.54■□□□□ 0.56
CPNE1-221ENST00000462352 EHBP1L1Q8N3D4 1523 aa18.53■□□□□ 0.56
CPNE1-221ENST00000462352 TTC37Q6PGP7 1564 aa18.52■□□□□ 0.56
CPNE1-221ENST00000462352 TSPOAP1O95153 1857 aa18.51■□□□□ 0.55
CPNE1-221ENST00000462352 LRRC9Q6ZRR7 1453 aa18.51■□□□□ 0.55
CPNE1-221ENST00000462352 PPRC1Q5VV67 1664 aaKnown RBP18.5■□□□□ 0.55
CPNE1-221ENST00000462352 KANK4Q5T7N3 995 aaPredicted RBP18.49■□□□□ 0.55
CPNE1-221ENST00000462352 TEX14Q8IWB6 1497 aa18.46■□□□□ 0.54
CPNE1-221ENST00000462352 PLCH2O75038 1416 aa18.44■□□□□ 0.54
CPNE1-221ENST00000462352 SUPT6HQ7KZ85 1726 aaKnown RBP18.43■□□□□ 0.54
CPNE1-221ENST00000462352 NCOA2Q15596 1464 aa18.42■□□□□ 0.54
CPNE1-221ENST00000462352 MYO5CQ9NQX4 1742 aa18.42■□□□□ 0.54
CPNE1-221ENST00000462352 CCNB3Q8WWL7 1395 aa18.41■□□□□ 0.54
CPNE1-221ENST00000462352 ARAP3Q8WWN8 1544 aa18.4■□□□□ 0.54
CPNE1-221ENST00000462352 GPATCH8Q9UKJ3 1502 aaKnown RBP18.39■□□□□ 0.54
CPNE1-221ENST00000462352 FANCAO15360 1455 aa18.39■□□□□ 0.53
CPNE1-221ENST00000462352 NEO1Q92859 1461 aa18.39■□□□□ 0.53
CPNE1-221ENST00000462352 PREX2Q70Z35 1606 aa18.38■□□□□ 0.53
CPNE1-221ENST00000462352 CDC42BPAQ5VT25 1732 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms