RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 KIAA0586Q9BVV6 1533 aa18.62■□□□□ 0.57
SSBP1-202ENST00000461433 SHROOM2Q13796 1616 aa18.59■□□□□ 0.57
SSBP1-202ENST00000461433 CTTNBP2Q8WZ74 1663 aa18.58■□□□□ 0.57
SSBP1-202ENST00000461433 IQGAP2Q13576 1575 aa18.55■□□□□ 0.56
SSBP1-202ENST00000461433 JPH4Q96JJ6 628 aa18.55■□□□□ 0.56
SSBP1-202ENST00000461433 GOLGA3Q08378 1498 aa18.55■□□□□ 0.56
SSBP1-202ENST00000461433 EHMT2Q96KQ7 1210 aa18.53■□□□□ 0.56
SSBP1-202ENST00000461433 ARHGEF11O15085 1522 aa18.53■□□□□ 0.56
SSBP1-202ENST00000461433 RIMBP3CA6NJZ7 1639 aa18.51■□□□□ 0.55
SSBP1-202ENST00000461433 RIMBP3BA6NNM3 1639 aa18.51■□□□□ 0.55
SSBP1-202ENST00000461433 RIMBP3Q9UFD9 1639 aa18.51■□□□□ 0.55
SSBP1-202ENST00000461433 ERCC6L2Q5T890 1561 aa18.51■□□□□ 0.55
SSBP1-202ENST00000461433 PRG4Q92954 1404 aaPredicted RBP18.48■□□□□ 0.55
SSBP1-202ENST00000461433 UGGT2Q9NYU1 1516 aa18.47■□□□□ 0.55
SSBP1-202ENST00000461433 UBTFP17480 764 aaKnown RBP18.46■□□□□ 0.55
SSBP1-202ENST00000461433 DISP1Q96F81 1524 aa18.44■□□□□ 0.54
SSBP1-202ENST00000461433 LOC105371045A0A1W2PR82 267 aa18.41■□□□□ 0.54
SSBP1-202ENST00000461433 ARAP1Q96P48 1450 aa18.4■□□□□ 0.54
SSBP1-202ENST00000461433 KIAA0556O60303 1618 aa18.38■□□□□ 0.53
SSBP1-202ENST00000461433 TNIKQ9UKE5 1360 aa18.38■□□□□ 0.53
SSBP1-202ENST00000461433 CARMIL2Q6F5E8 1435 aa18.38■□□□□ 0.53
SSBP1-202ENST00000461433 SAMD9Q5K651 1589 aa18.37■□□□□ 0.53
SSBP1-202ENST00000461433 RANGAP1P46060 587 aaPredicted RBP18.34■□□□□ 0.53
SSBP1-202ENST00000461433 CYB5RLQ6IPT4 315 aa18.33■□□□□ 0.52
SSBP1-202ENST00000461433 EFCAB5A4FU69 1503 aa18.3■□□□□ 0.52
SSBP1-202ENST00000461433 P3H3Q8IVL6 736 aa18.29■□□□□ 0.52
SSBP1-202ENST00000461433 PTPRGP23470 1445 aa18.29■□□□□ 0.52
SSBP1-202ENST00000461433 ARHGAP35Q9NRY4 1499 aa18.29■□□□□ 0.52
SSBP1-202ENST00000461433 FHOD3Q2V2M9 1422 aa18.25■□□□□ 0.51
SSBP1-202ENST00000461433 TTBK1Q5TCY1 1321 aaPredicted RBP18.25■□□□□ 0.51
SSBP1-202ENST00000461433 CLIP1P30622 1438 aa18.23■□□□□ 0.51
SSBP1-202ENST00000461433 CEP162Q5TB80 1403 aa18.22■□□□□ 0.51
SSBP1-202ENST00000461433 ADCY10Q96PN6 1610 aa18.2■□□□□ 0.5
SSBP1-202ENST00000461433 ABCA8O94911 1581 aa18.18■□□□□ 0.5
SSBP1-202ENST00000461433 PLB1Q6P1J6 1458 aa18.18■□□□□ 0.5
SSBP1-202ENST00000461433 UACAQ9BZF9 1416 aa18.18■□□□□ 0.5
SSBP1-202ENST00000461433 UHRF1BP1LA0JNW5 1464 aa18.17■□□□□ 0.5
SSBP1-202ENST00000461433 ABCC2Q92887 1545 aa18.15■□□□□ 0.5
SSBP1-202ENST00000461433 RAPGEF6Q8TEU7 1601 aa18.12■□□□□ 0.49
SSBP1-202ENST00000461433 FMN1Q68DA7 1419 aa18.11■□□□□ 0.49
SSBP1-202ENST00000461433 KDM5BQ9UGL1 1544 aa18.08■□□□□ 0.48
SSBP1-202ENST00000461433 NUP153P49790 1475 aaKnown RBP18.07■□□□□ 0.48
SSBP1-202ENST00000461433 ZCCHC11Q5TAX3 1644 aaKnown RBP18.05■□□□□ 0.48
SSBP1-202ENST00000461433 PCF11O94913 1555 aaKnown RBP18.04■□□□□ 0.48
SSBP1-202ENST00000461433 ATP10BO94823 1461 aa18.04■□□□□ 0.48
SSBP1-202ENST00000461433 CASKIN1Q8WXD9 1431 aa18.03■□□□□ 0.48
SSBP1-202ENST00000461433 NPM1P06748 294 aaKnown RBP eCLIP18.03■□□□□ 0.48
SSBP1-202ENST00000461433 LRRIQ1Q96JM4 1722 aa18.02■□□□□ 0.48
SSBP1-202ENST00000461433 MAPKBP1O60336 1514 aa18.01■□□□□ 0.47
SSBP1-202ENST00000461433 HECW1Q76N89 1606 aa18.01■□□□□ 0.47
SSBP1-202ENST00000461433 ARID3CA6NKF2 412 aa18■□□□□ 0.47
SSBP1-202ENST00000461433 FYCO1Q9BQS8 1478 aa17.98■□□□□ 0.47
SSBP1-202ENST00000461433 EPRSP07814 1512 aaKnown RBP17.98■□□□□ 0.47
SSBP1-202ENST00000461433 VPS8Q8N3P4 1428 aa17.97■□□□□ 0.47
SSBP1-202ENST00000461433 ATP1B4Q9UN42 357 aaPredicted RBP17.96■□□□□ 0.47
SSBP1-202ENST00000461433 ASXL2Q76L83 1435 aa17.96■□□□□ 0.47
SSBP1-202ENST00000461433 CDK13Q14004 1512 aaKnown RBP17.96■□□□□ 0.47
SSBP1-202ENST00000461433 CCDC18Q5T9S5 1454 aa17.9■□□□□ 0.46
SSBP1-202ENST00000461433 WDR7Q9Y4E6 1490 aa17.9■□□□□ 0.46
SSBP1-202ENST00000461433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.9■□□□□ 0.46
SSBP1-202ENST00000461433 HNRNPUL2Q1KMD3 747 aaKnown RBP17.9■□□□□ 0.46
SSBP1-202ENST00000461433 ABCC10Q5T3U5 1492 aa17.89■□□□□ 0.45
SSBP1-202ENST00000461433 KIF13AQ9H1H9 1805 aa17.89■□□□□ 0.45
SSBP1-202ENST00000461433 DIP2BQ9P265 1576 aa17.88■□□□□ 0.45
SSBP1-202ENST00000461433 MAGI3Q5TCQ9 1506 aa17.85■□□□□ 0.45
SSBP1-202ENST00000461433 PLEKHD1A6NEE1 506 aa17.85■□□□□ 0.45
SSBP1-202ENST00000461433 GLI2P10070 1586 aa17.83■□□□□ 0.45
SSBP1-202ENST00000461433 CFAP43Q8NDM7 1665 aa17.83■□□□□ 0.44
SSBP1-202ENST00000461433 TRHP20396 242 aaPredicted RBP17.83■□□□□ 0.44
SSBP1-202ENST00000461433 KCNH8Q96L42 1107 aa17.83■□□□□ 0.44
SSBP1-202ENST00000461433 TIAM1Q13009 1591 aa17.82■□□□□ 0.44
SSBP1-202ENST00000461433 FAM69CQ0P6D2 419 aa17.82■□□□□ 0.44
SSBP1-202ENST00000461433 CDK11AQ9UQ88 783 aaPredicted RBP17.82■□□□□ 0.44
SSBP1-202ENST00000461433 MAP3K1Q13233 1512 aa17.81■□□□□ 0.44
SSBP1-202ENST00000461433 TROQ12816 1431 aaPredicted RBP17.8■□□□□ 0.44
SSBP1-202ENST00000461433 MAP3K4Q9Y6R4 1608 aa17.78■□□□□ 0.44
SSBP1-202ENST00000461433 KIF14Q15058 1648 aa17.77■□□□□ 0.44
SSBP1-202ENST00000461433 ABCA9Q8IUA7 1624 aa17.77■□□□□ 0.44
SSBP1-202ENST00000461433 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.76■□□□□ 0.432e-6■□□□□ 8.3
SSBP1-202ENST00000461433 PPRC1Q5VV67 1664 aaKnown RBP17.74■□□□□ 0.43
SSBP1-202ENST00000461433 KANK4Q5T7N3 995 aaPredicted RBP17.74■□□□□ 0.43
SSBP1-202ENST00000461433 TTC37Q6PGP7 1564 aa17.73■□□□□ 0.43
SSBP1-202ENST00000461433 LRRC9Q6ZRR7 1453 aa17.73■□□□□ 0.43
SSBP1-202ENST00000461433 MTUS2Q5JR59 1369 aa17.73■□□□□ 0.43
SSBP1-202ENST00000461433 EHBP1L1Q8N3D4 1523 aa17.73■□□□□ 0.43
SSBP1-202ENST00000461433 TSPOAP1O95153 1857 aa17.73■□□□□ 0.43
SSBP1-202ENST00000461433 CD109Q6YHK3 1445 aa17.71■□□□□ 0.43
SSBP1-202ENST00000461433 APLP2Q06481 763 aa17.7■□□□□ 0.42
SSBP1-202ENST00000461433 SUPT6HQ7KZ85 1726 aaKnown RBP17.66■□□□□ 0.42
SSBP1-202ENST00000461433 MYO5CQ9NQX4 1742 aa17.66■□□□□ 0.42
SSBP1-202ENST00000461433 PLCH2O75038 1416 aa17.65■□□□□ 0.42
SSBP1-202ENST00000461433 CDC42BPAQ5VT25 1732 aa17.64■□□□□ 0.42
SSBP1-202ENST00000461433 NCOA2Q15596 1464 aa17.64■□□□□ 0.41
SSBP1-202ENST00000461433 CDC42BPBQ9Y5S2 1711 aa17.64■□□□□ 0.41
SSBP1-202ENST00000461433 GPATCH8Q9UKJ3 1502 aaKnown RBP17.62■□□□□ 0.41
SSBP1-202ENST00000461433 PREX2Q70Z35 1606 aa17.62■□□□□ 0.41
SSBP1-202ENST00000461433 ARAP3Q8WWN8 1544 aa17.62■□□□□ 0.41
SSBP1-202ENST00000461433 TEX14Q8IWB6 1497 aa17.61■□□□□ 0.41
SSBP1-202ENST00000461433 CCNB3Q8WWL7 1395 aa17.59■□□□□ 0.41
SSBP1-202ENST00000461433 FANCAO15360 1455 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms