RNA–Protein interactions for RNA: ENST00000461394.5

MSH2-204, Transcript of mutS homolog 2, humanhuman

TSL 3

Gene MSH2, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-204ENST00000461394 GAPVD1Q14C86 1478 aa10.57□□□□□ -0.72
MSH2-204ENST00000461394 TDRD9Q8NDG6 1382 aaKnown RBP10.57□□□□□ -0.72
MSH2-204ENST00000461394 TTBK1Q5TCY1 1321 aaPredicted RBP10.57□□□□□ -0.72
MSH2-204ENST00000461394 CTTNBP2Q8WZ74 1663 aa10.57□□□□□ -0.72
MSH2-204ENST00000461394 NPM3O75607 178 aaKnown RBP10.56□□□□□ -0.72
MSH2-204ENST00000461394 APLP2Q06481 763 aa10.56□□□□□ -0.72
MSH2-204ENST00000461394 THOC2Q8NI27 1593 aaKnown RBP10.55□□□□□ -0.72
MSH2-204ENST00000461394 IFT140Q96RY7 1462 aa10.54□□□□□ -0.72
MSH2-204ENST00000461394 VPS8Q8N3P4 1428 aa10.53□□□□□ -0.72
MSH2-204ENST00000461394 AMER1Q5JTC6 1135 aaPredicted RBP10.5□□□□□ -0.73
MSH2-204ENST00000461394 AQRO60306 1485 aaKnown RBP eCLIP10.49□□□□□ -0.73
MSH2-204ENST00000461394 ARAP1Q96P48 1450 aa10.49□□□□□ -0.73
MSH2-204ENST00000461394 EIF4G3O43432 1585 aaKnown RBP10.48□□□□□ -0.73
MSH2-204ENST00000461394 PIAS4Q8N2W9 510 aaPredicted RBP10.48□□□□□ -0.73
MSH2-204ENST00000461394 GRIN2BQ13224 1484 aa10.48□□□□□ -0.73
MSH2-204ENST00000461394 ARHGAP35Q9NRY4 1499 aa10.47□□□□□ -0.73
MSH2-204ENST00000461394 ZNF608Q9ULD9 1512 aaPredicted RBP10.47□□□□□ -0.73
MSH2-204ENST00000461394 ADAMTS12P58397 1594 aa10.47□□□□□ -0.73
MSH2-204ENST00000461394 ZBTB22O15209 634 aa10.46□□□□□ -0.73
MSH2-204ENST00000461394 FHAD1B1AJZ9 1412 aa10.45□□□□□ -0.74
MSH2-204ENST00000461394 P3H3Q8IVL6 736 aa10.44□□□□□ -0.74
MSH2-204ENST00000461394 EFCAB5A4FU69 1503 aa10.43□□□□□ -0.74
MSH2-204ENST00000461394 RTN4Q9NQC3 1192 aaKnown RBP10.43□□□□□ -0.74
MSH2-204ENST00000461394 SNAPC4Q5SXM2 1469 aa10.42□□□□□ -0.74
MSH2-204ENST00000461394 ATP1B4Q9UN42 357 aaPredicted RBP10.41□□□□□ -0.74
MSH2-204ENST00000461394 FHOD3Q2V2M9 1422 aa10.39□□□□□ -0.75
MSH2-204ENST00000461394 IQGAP2Q13576 1575 aa10.39□□□□□ -0.75
MSH2-204ENST00000461394 PCF11O94913 1555 aaKnown RBP10.38□□□□□ -0.75
MSH2-204ENST00000461394 MAGI1Q96QZ7 1491 aaPredicted RBP10.37□□□□□ -0.75
MSH2-204ENST00000461394 HRCP23327 699 aa10.37□□□□□ -0.75
MSH2-204ENST00000461394 FBLN2P98095 1184 aa10.37□□□□□ -0.75
MSH2-204ENST00000461394 SAMD9Q5K651 1589 aa10.36□□□□□ -0.75
MSH2-204ENST00000461394 CHMP7Q8WUX9 453 aaPredicted RBP10.36□□□□□ -0.75
MSH2-204ENST00000461394 CFAP43Q8NDM7 1665 aa10.35□□□□□ -0.75
MSH2-204ENST00000461394 CNKSR2Q8WXI2 1034 aa10.35□□□□□ -0.75
MSH2-204ENST00000461394 GRIN2AQ12879 1464 aa10.35□□□□□ -0.75
MSH2-204ENST00000461394 TIAM1Q13009 1591 aa10.35□□□□□ -0.75
MSH2-204ENST00000461394 FMN1Q68DA7 1419 aa10.33□□□□□ -0.76
MSH2-204ENST00000461394 SYNJ2O15056 1496 aa10.33□□□□□ -0.76
MSH2-204ENST00000461394 FYCO1Q9BQS8 1478 aa10.32□□□□□ -0.76
MSH2-204ENST00000461394 FOXD4L1Q9NU39 408 aa10.31□□□□□ -0.76
MSH2-204ENST00000461394 KANK4Q5T7N3 995 aaPredicted RBP10.3□□□□□ -0.76
MSH2-204ENST00000461394 CASKIN1Q8WXD9 1431 aa10.3□□□□□ -0.76
MSH2-204ENST00000461394 CHD1O14646 1710 aa10.3□□□□□ -0.76
MSH2-204ENST00000461394 MAP3K1Q13233 1512 aa10.29□□□□□ -0.76
MSH2-204ENST00000461394 KIAA0586Q9BVV6 1533 aa10.29□□□□□ -0.76
MSH2-204ENST00000461394 HNRNPUL2Q1KMD3 747 aaKnown RBP10.29□□□□□ -0.76
MSH2-204ENST00000461394 CEP170Q5SW79 1584 aa10.29□□□□□ -0.76
MSH2-204ENST00000461394 UGGT2Q9NYU1 1516 aa10.28□□□□□ -0.76
MSH2-204ENST00000461394 KIAA0556O60303 1618 aa10.27□□□□□ -0.77
MSH2-204ENST00000461394 HECW1Q76N89 1606 aa10.27□□□□□ -0.77
MSH2-204ENST00000461394 SCAF1Q9H7N4 1312 aaKnown RBP10.27□□□□□ -0.77
MSH2-204ENST00000461394 LRRIQ1Q96JM4 1722 aa10.27□□□□□ -0.77
MSH2-204ENST00000461394 LRRC9Q6ZRR7 1453 aa10.26□□□□□ -0.77
MSH2-204ENST00000461394 ZEB1P37275 1124 aaPredicted RBP10.26□□□□□ -0.77
MSH2-204ENST00000461394 CCER1Q8TC90 406 aaPredicted RBP10.26□□□□□ -0.77
MSH2-204ENST00000461394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.23□□□□□ -0.77
MSH2-204ENST00000461394 MTUS2Q5JR59 1369 aa10.23□□□□□ -0.77
MSH2-204ENST00000461394 CCDC18Q5T9S5 1454 aa10.23□□□□□ -0.77
MSH2-204ENST00000461394 NUP160Q12769 1436 aa10.22□□□□□ -0.77
MSH2-204ENST00000461394 CARMIL2Q6F5E8 1435 aa10.22□□□□□ -0.77
MSH2-204ENST00000461394 SUPT6HQ7KZ85 1726 aaKnown RBP10.21□□□□□ -0.77
MSH2-204ENST00000461394 DISP1Q96F81 1524 aa10.21□□□□□ -0.78
MSH2-204ENST00000461394 RAPGEF6Q8TEU7 1601 aa10.21□□□□□ -0.78
MSH2-204ENST00000461394 ARID3CA6NKF2 412 aa10.2□□□□□ -0.78
MSH2-204ENST00000461394 ITGAEP38570 1179 aa10.2□□□□□ -0.78
MSH2-204ENST00000461394 EHBP1L1Q8N3D4 1523 aa10.2□□□□□ -0.78
MSH2-204ENST00000461394 CCNB3Q8WWL7 1395 aa10.2□□□□□ -0.78
MSH2-204ENST00000461394 RRBP1Q9P2E9 1410 aaKnown RBP10.19□□□□□ -0.78
MSH2-204ENST00000461394 FAM50AQ14320 339 aaKnown RBP10.19□□□□□ -0.78
MSH2-204ENST00000461394 JPH4Q96JJ6 628 aa10.18□□□□□ -0.78
MSH2-204ENST00000461394 CDK13Q14004 1512 aaKnown RBP10.17□□□□□ -0.78
MSH2-204ENST00000461394 EPRSP07814 1512 aaKnown RBP10.17□□□□□ -0.78
MSH2-204ENST00000461394 PHLDB1Q86UU1 1377 aa10.16□□□□□ -0.78
MSH2-204ENST00000461394 NCOA2Q15596 1464 aa10.14□□□□□ -0.79
MSH2-204ENST00000461394 PRG4Q92954 1404 aaPredicted RBP10.14□□□□□ -0.79
MSH2-204ENST00000461394 CDK11AQ9UQ88 783 aaPredicted RBP10.12□□□□□ -0.79
MSH2-204ENST00000461394 MAGI3Q5TCQ9 1506 aa10.12□□□□□ -0.79
MSH2-204ENST00000461394 NUP153P49790 1475 aaKnown RBP10.11□□□□□ -0.79
MSH2-204ENST00000461394 PLB1Q6P1J6 1458 aa10.11□□□□□ -0.79
MSH2-204ENST00000461394 SHROOM2Q13796 1616 aa10.11□□□□□ -0.79
MSH2-204ENST00000461394 MYOM3Q5VTT5 1437 aa10.1□□□□□ -0.79
MSH2-204ENST00000461394 FGD6Q6ZV73 1430 aa10.1□□□□□ -0.79
MSH2-204ENST00000461394 PTPN23Q9H3S7 1636 aa10.1□□□□□ -0.79
MSH2-204ENST00000461394 ABCA8O94911 1581 aa10.09□□□□□ -0.79
MSH2-204ENST00000461394 PTPRGP23470 1445 aa10.08□□□□□ -0.8
MSH2-204ENST00000461394 CLASP1Q7Z460 1538 aa10.07□□□□□ -0.8
MSH2-204ENST00000461394 ITSN2Q9NZM3 1697 aa10.06□□□□□ -0.8
MSH2-204ENST00000461394 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.05□□□□□ -0.8
MSH2-204ENST00000461394 ARHGEF11O15085 1522 aa10.05□□□□□ -0.8
MSH2-204ENST00000461394 ADCY10Q96PN6 1610 aa10.04□□□□□ -0.8
MSH2-204ENST00000461394 TROQ12816 1431 aaPredicted RBP10.04□□□□□ -0.8
MSH2-204ENST00000461394 SETD5Q9C0A6 1442 aa10.04□□□□□ -0.8
MSH2-204ENST00000461394 ERCC6L2Q5T890 1561 aa10.04□□□□□ -0.8
MSH2-204ENST00000461394 KIF14Q15058 1648 aa10.04□□□□□ -0.8
MSH2-204ENST00000461394 PLEKHD1A6NEE1 506 aa10.03□□□□□ -0.8
MSH2-204ENST00000461394 RAB3GAP2Q9H2M9 1393 aa10.02□□□□□ -0.8
MSH2-204ENST00000461394 UACAQ9BZF9 1416 aa10.02□□□□□ -0.81
MSH2-204ENST00000461394 TCOF1Q13428 1488 aaKnown RBP10.01□□□□□ -0.81
MSH2-204ENST00000461394 MIA2Q96PC5 1412 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms