RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 CARMIL1Q5VZK9 1371 aa16.74■□□□□ 0.27
USP39-210ENST00000459775 SYNJ2O15056 1496 aa16.73■□□□□ 0.27
USP39-210ENST00000459775 UBTFP17480 764 aaKnown RBP16.72■□□□□ 0.27
USP39-210ENST00000459775 PRXQ9BXM0 1461 aa16.72■□□□□ 0.27
USP39-210ENST00000459775 CHMP7Q8WUX9 453 aaPredicted RBP16.7■□□□□ 0.26
USP39-210ENST00000459775 RANGAP1P46060 587 aaPredicted RBP16.69■□□□□ 0.26
USP39-210ENST00000459775 DAXXQ9UER7 740 aaPredicted RBP16.69■□□□□ 0.26
USP39-210ENST00000459775 PBRM1Q86U86 1689 aa16.67■□□□□ 0.26
USP39-210ENST00000459775 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
USP39-210ENST00000459775 GOLGA3Q08378 1498 aa16.65■□□□□ 0.26
USP39-210ENST00000459775 KIF21BO75037 1637 aa16.65■□□□□ 0.26
USP39-210ENST00000459775 FHAD1B1AJZ9 1412 aa16.6■□□□□ 0.25
USP39-210ENST00000459775 ADAMTS12P58397 1594 aa16.59■□□□□ 0.25
USP39-210ENST00000459775 CUL7Q14999 1698 aa16.58■□□□□ 0.25
USP39-210ENST00000459775 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
USP39-210ENST00000459775 GRIN2AQ12879 1464 aa16.51■□□□□ 0.23
USP39-210ENST00000459775 CEP162Q5TB80 1403 aa16.5■□□□□ 0.23
USP39-210ENST00000459775 SHROOM2Q13796 1616 aa16.48■□□□□ 0.23
USP39-210ENST00000459775 NUP160Q12769 1436 aa16.48■□□□□ 0.23
USP39-210ENST00000459775 CEP170Q5SW79 1584 aa16.47■□□□□ 0.23
USP39-210ENST00000459775 APLP2Q06481 763 aa16.46■□□□□ 0.23
USP39-210ENST00000459775 P3H3Q8IVL6 736 aa16.46■□□□□ 0.23
USP39-210ENST00000459775 CLIP1P30622 1438 aa16.43■□□□□ 0.22
USP39-210ENST00000459775 ERCC6L2Q5T890 1561 aa16.42■□□□□ 0.22
USP39-210ENST00000459775 KIF13AQ9H1H9 1805 aa16.39■□□□□ 0.21
USP39-210ENST00000459775 CTTNBP2Q8WZ74 1663 aa16.37■□□□□ 0.21
USP39-210ENST00000459775 ERICH6Q7L0X2 663 aa16.37■□□□□ 0.21
USP39-210ENST00000459775 KIAA0586Q9BVV6 1533 aa16.36■□□□□ 0.21
USP39-210ENST00000459775 PRKCSHP14314 528 aaPredicted RBP16.36■□□□□ 0.21
USP39-210ENST00000459775 ARHGAP35Q9NRY4 1499 aa16.36■□□□□ 0.21
USP39-210ENST00000459775 IQGAP2Q13576 1575 aa16.34■□□□□ 0.21
USP39-210ENST00000459775 JPH4Q96JJ6 628 aa16.34■□□□□ 0.21
USP39-210ENST00000459775 MAPKBP1O60336 1514 aa16.32■□□□□ 0.2
USP39-210ENST00000459775 FHOD3Q2V2M9 1422 aa16.31■□□□□ 0.2
USP39-210ENST00000459775 ABCC10Q5T3U5 1492 aa16.31■□□□□ 0.2
USP39-210ENST00000459775 PPARGC1BQ86YN6 1023 aaKnown RBP16.29■□□□□ 0.2
USP39-210ENST00000459775 PRG4Q92954 1404 aaPredicted RBP16.28■□□□□ 0.2
USP39-210ENST00000459775 DISP1Q96F81 1524 aa16.26■□□□□ 0.19
USP39-210ENST00000459775 DIP2BQ9P265 1576 aa16.26■□□□□ 0.19
USP39-210ENST00000459775 UGGT2Q9NYU1 1516 aa16.25■□□□□ 0.19
USP39-210ENST00000459775 NPM1P06748 294 aaKnown RBP eCLIP16.25■□□□□ 0.19
USP39-210ENST00000459775 SAMD9Q5K651 1589 aa16.23■□□□□ 0.19
USP39-210ENST00000459775 KDM6BO15054 1643 aa16.23■□□□□ 0.19
USP39-210ENST00000459775 ATP1B4Q9UN42 357 aaPredicted RBP16.22■□□□□ 0.19
USP39-210ENST00000459775 VPS8Q8N3P4 1428 aa16.21■□□□□ 0.19
USP39-210ENST00000459775 FAM69CQ0P6D2 419 aa16.21■□□□□ 0.18
USP39-210ENST00000459775 EFCAB5A4FU69 1503 aa16.2■□□□□ 0.18
USP39-210ENST00000459775 ARID3CA6NKF2 412 aa16.19■□□□□ 0.18
USP39-210ENST00000459775 KIAA0556O60303 1618 aa16.19■□□□□ 0.18
USP39-210ENST00000459775 ADCY10Q96PN6 1610 aa16.18■□□□□ 0.18
USP39-210ENST00000459775 CARMIL2Q6F5E8 1435 aa16.15■□□□□ 0.18
USP39-210ENST00000459775 PCF11O94913 1555 aaKnown RBP16.11■□□□□ 0.17
USP39-210ENST00000459775 PLB1Q6P1J6 1458 aa16.1■□□□□ 0.17
USP39-210ENST00000459775 FMN1Q68DA7 1419 aa16.1■□□□□ 0.17
USP39-210ENST00000459775 PTPRGP23470 1445 aa16.09■□□□□ 0.17
USP39-210ENST00000459775 KDM4FA0A1W2PPD8 638 aa16.09■□□□□ 0.17
USP39-210ENST00000459775 KANK4Q5T7N3 995 aaPredicted RBP16.09■□□□□ 0.17
USP39-210ENST00000459775 CASKIN1Q8WXD9 1431 aa16.07■□□□□ 0.16
USP39-210ENST00000459775 GLI2P10070 1586 aa16.06■□□□□ 0.16
USP39-210ENST00000459775 TSPOAP1O95153 1857 aa16.03■□□□□ 0.16
USP39-210ENST00000459775 FYCO1Q9BQS8 1478 aa16.02■□□□□ 0.16
USP39-210ENST00000459775 ABCC2Q92887 1545 aa16.01■□□□□ 0.15
USP39-210ENST00000459775 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.01■□□□□ 0.15
USP39-210ENST00000459775 HNRNPUL2Q1KMD3 747 aaKnown RBP16.01■□□□□ 0.15
USP39-210ENST00000459775 CDK13Q14004 1512 aaKnown RBP16.01■□□□□ 0.15
USP39-210ENST00000459775 NUP153P49790 1475 aaKnown RBP16.01■□□□□ 0.15
USP39-210ENST00000459775 ILDR1Q86SU0 546 aaPredicted RBP16■□□□□ 0.15
USP39-210ENST00000459775 LRRIQ1Q96JM4 1722 aa15.99■□□□□ 0.15
USP39-210ENST00000459775 UHRF1BP1LA0JNW5 1464 aa15.98■□□□□ 0.15
USP39-210ENST00000459775 RAPGEF6Q8TEU7 1601 aa15.98■□□□□ 0.15
USP39-210ENST00000459775 ADGRL1O94910 1474 aa15.98■□□□□ 0.15
USP39-210ENST00000459775 NCBP3Q53F19 620 aaKnown RBP15.98■□□□□ 0.15
USP39-210ENST00000459775 ABCA8O94911 1581 aa15.97■□□□□ 0.15
USP39-210ENST00000459775 UACAQ9BZF9 1416 aa15.97■□□□□ 0.15
USP39-210ENST00000459775 PPRC1Q5VV67 1664 aaKnown RBP15.96■□□□□ 0.15
USP39-210ENST00000459775 EPRSP07814 1512 aaKnown RBP15.96■□□□□ 0.15
USP39-210ENST00000459775 TIAM1Q13009 1591 aa15.96■□□□□ 0.14
USP39-210ENST00000459775 TEX14Q8IWB6 1497 aa15.95■□□□□ 0.14
USP39-210ENST00000459775 ASXL2Q76L83 1435 aa15.94■□□□□ 0.14
USP39-210ENST00000459775 HECW1Q76N89 1606 aa15.94■□□□□ 0.14
USP39-210ENST00000459775 ATP10BO94823 1461 aa15.93■□□□□ 0.14
USP39-210ENST00000459775 MAGI3Q5TCQ9 1506 aa15.93■□□□□ 0.14
USP39-210ENST00000459775 LRRC9Q6ZRR7 1453 aa15.91■□□□□ 0.14
USP39-210ENST00000459775 MAP3K4Q9Y6R4 1608 aa15.91■□□□□ 0.14
USP39-210ENST00000459775 MTUS2Q5JR59 1369 aa15.89■□□□□ 0.13
USP39-210ENST00000459775 HECW2Q9P2P5 1572 aa15.89■□□□□ 0.13
USP39-210ENST00000459775 CFAP43Q8NDM7 1665 aa15.88■□□□□ 0.13
USP39-210ENST00000459775 CCDC18Q5T9S5 1454 aa15.88■□□□□ 0.13
USP39-210ENST00000459775 MAP3K1Q13233 1512 aa15.87■□□□□ 0.13
USP39-210ENST00000459775 KDM5BQ9UGL1 1544 aa15.87■□□□□ 0.13
USP39-210ENST00000459775 PCGF6Q9BYE7 350 aa15.85■□□□□ 0.13
USP39-210ENST00000459775 KCNH8Q96L42 1107 aa15.83■□□□□ 0.13
USP39-210ENST00000459775 PHLDB1Q86UU1 1377 aa15.83■□□□□ 0.12
USP39-210ENST00000459775 PLEKHD1A6NEE1 506 aa15.83■□□□□ 0.12
USP39-210ENST00000459775 CDK11AQ9UQ88 783 aaPredicted RBP15.82■□□□□ 0.12
USP39-210ENST00000459775 TRIM26Q12899 539 aaPredicted RBP15.81■□□□□ 0.12
USP39-210ENST00000459775 ZCCHC11Q5TAX3 1644 aaKnown RBP15.81■□□□□ 0.12
USP39-210ENST00000459775 COL17A1Q9UMD9 1497 aaPredicted RBP15.79■□□□□ 0.12
USP39-210ENST00000459775 NCOA2Q15596 1464 aa15.79■□□□□ 0.12
USP39-210ENST00000459775 TROQ12816 1431 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms