RNA–Protein interactions for RNA: ENST00000459750.5

MCF2L2-204, Transcript of MCF.2 cell line derived transforming sequence-like 2, humanhuman

TSL 1 (best)

Gene MCF2L2, Length 3,090 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L2-204ENST00000459750 ZNF316A6NFI3 1004 aaPredicted RBP13.29□□□□□ -0.28
MCF2L2-204ENST00000459750 SCAF1Q9H7N4 1312 aaKnown RBP13.28□□□□□ -0.28
MCF2L2-204ENST00000459750 HIRIP3Q9BW71 556 aaPredicted RBP13.27□□□□□ -0.29
MCF2L2-204ENST00000459750 ERICH6Q7L0X2 663 aa13.26□□□□□ -0.29
MCF2L2-204ENST00000459750 CCNB3Q8WWL7 1395 aa13.26□□□□□ -0.29
MCF2L2-204ENST00000459750 CHIC2Q9UKJ5 165 aa13.26□□□□□ -0.29
MCF2L2-204ENST00000459750 PDS5BQ9NTI5 1447 aa13.26□□□□□ -0.29
MCF2L2-204ENST00000459750 SIN3AQ96ST3 1273 aa13.25□□□□□ -0.29
MCF2L2-204ENST00000459750 PHLDB1Q86UU1 1377 aa13.24□□□□□ -0.29
MCF2L2-204ENST00000459750 MIER1Q8N108 512 aa13.24□□□□□ -0.29
MCF2L2-204ENST00000459750 DNMBPQ6XZF7 1577 aa13.23□□□□□ -0.29
MCF2L2-204ENST00000459750 GAPVD1Q14C86 1478 aa13.21□□□□□ -0.29
MCF2L2-204ENST00000459750 BCL11AQ9H165 835 aa13.21□□□□□ -0.29
MCF2L2-204ENST00000459750 DHX57Q6P158 1386 aaKnown RBP13.2□□□□□ -0.3
MCF2L2-204ENST00000459750 ABCA10Q8WWZ4 1543 aa13.19□□□□□ -0.3
MCF2L2-204ENST00000459750 KIF21AQ7Z4S6 1674 aa13.18□□□□□ -0.3
MCF2L2-204ENST00000459750 MTUS2Q5JR59 1369 aa13.18□□□□□ -0.3
MCF2L2-204ENST00000459750 PRDM2Q13029 1718 aa13.18□□□□□ -0.3
MCF2L2-204ENST00000459750 RAB3GAP2Q9H2M9 1393 aa13.17□□□□□ -0.3
MCF2L2-204ENST00000459750 RRP7BPQ9NSQ0 103 aa13.16□□□□□ -0.3
MCF2L2-204ENST00000459750 ZNF608Q9ULD9 1512 aaPredicted RBP13.16□□□□□ -0.3
MCF2L2-204ENST00000459750 ERCC6Q03468 1493 aa13.15□□□□□ -0.3
MCF2L2-204ENST00000459750 PCF11O94913 1555 aaKnown RBP13.13□□□□□ -0.31
MCF2L2-204ENST00000459750 LAMC3Q9Y6N6 1575 aa13.13□□□□□ -0.31
MCF2L2-204ENST00000459750 LRRC9Q6ZRR7 1453 aa13.13□□□□□ -0.31
MCF2L2-204ENST00000459750 CHMP7Q8WUX9 453 aaPredicted RBP13.12□□□□□ -0.31
MCF2L2-204ENST00000459750 FHAD1B1AJZ9 1412 aa13.11□□□□□ -0.31
MCF2L2-204ENST00000459750 RRBP1Q9P2E9 1410 aaKnown RBP13.1□□□□□ -0.31
MCF2L2-204ENST00000459750 ZNF777Q9ULD5 760 aaPredicted RBP13.1□□□□□ -0.31
MCF2L2-204ENST00000459750 TIAM1Q13009 1591 aa13.1□□□□□ -0.31
MCF2L2-204ENST00000459750 TRIM52Q96A61 297 aa13.09□□□□□ -0.31
MCF2L2-204ENST00000459750 SLC24A1O60721 1099 aa13.09□□□□□ -0.31
MCF2L2-204ENST00000459750 FOXD1Q16676 465 aa13.08□□□□□ -0.32
MCF2L2-204ENST00000459750 GTF3C3Q9Y5Q9 886 aa13.08□□□□□ -0.32
MCF2L2-204ENST00000459750 ACIN1Q9UKV3 1341 aaKnown RBP13.06□□□□□ -0.32
MCF2L2-204ENST00000459750 ZNF644Q9H582 1327 aaPredicted RBP13.04□□□□□ -0.32
MCF2L2-204ENST00000459750 CNGB1Q14028 1251 aaPredicted RBP13.04□□□□□ -0.32
MCF2L2-204ENST00000459750 SETD5Q9C0A6 1442 aa13.03□□□□□ -0.32
MCF2L2-204ENST00000459750 KCNH8Q96L42 1107 aa13.03□□□□□ -0.32
MCF2L2-204ENST00000459750 DDX10Q13206 875 aaKnown RBP13.02□□□□□ -0.33
MCF2L2-204ENST00000459750 FMN1Q68DA7 1419 aa13.01□□□□□ -0.33
MCF2L2-204ENST00000459750 CENPBP07199 599 aaPredicted RBP13.01□□□□□ -0.33
MCF2L2-204ENST00000459750 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
MCF2L2-204ENST00000459750 MRC2Q9UBG0 1479 aa13.01□□□□□ -0.33
MCF2L2-204ENST00000459750 CDK13Q14004 1512 aaKnown RBP12.99□□□□□ -0.33
MCF2L2-204ENST00000459750 PTPRKQ15262 1439 aa12.99□□□□□ -0.33
MCF2L2-204ENST00000459750 SNAPC4Q5SXM2 1469 aa12.97□□□□□ -0.33
MCF2L2-204ENST00000459750 ABCA5Q8WWZ7 1642 aa12.97□□□□□ -0.33
MCF2L2-204ENST00000459750 TARBP1Q13395 1621 aaKnown RBP12.97□□□□□ -0.33
MCF2L2-204ENST00000459750 CUL7Q14999 1698 aa12.97□□□□□ -0.33
MCF2L2-204ENST00000459750 FYCO1Q9BQS8 1478 aa12.96□□□□□ -0.33
MCF2L2-204ENST00000459750 FGD6Q6ZV73 1430 aa12.96□□□□□ -0.33
MCF2L2-204ENST00000459750 NCOA2Q15596 1464 aa12.95□□□□□ -0.34
MCF2L2-204ENST00000459750 GRIN2BQ13224 1484 aa12.94□□□□□ -0.34
MCF2L2-204ENST00000459750 CTTNBP2Q8WZ74 1663 aa12.94□□□□□ -0.34
MCF2L2-204ENST00000459750 JPH4Q96JJ6 628 aa12.93□□□□□ -0.34
MCF2L2-204ENST00000459750 WDR97A6NE52 1622 aa12.92□□□□□ -0.34
MCF2L2-204ENST00000459750 ZNF326Q5BKZ1 582 aaKnown RBP12.92□□□□□ -0.34
MCF2L2-204ENST00000459750 EFCAB5A4FU69 1503 aa12.91□□□□□ -0.34
MCF2L2-204ENST00000459750 MAGI3Q5TCQ9 1506 aa12.91□□□□□ -0.34
MCF2L2-204ENST00000459750 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
MCF2L2-204ENST00000459750 TONSLQ96HA7 1378 aa12.88□□□□□ -0.35
MCF2L2-204ENST00000459750 POLR3GLQ9BT43 218 aa12.88□□□□□ -0.35
MCF2L2-204ENST00000459750 CLSPNQ9HAW4 1339 aa12.88□□□□□ -0.35
MCF2L2-204ENST00000459750 IQGAP2Q13576 1575 aa12.88□□□□□ -0.35
MCF2L2-204ENST00000459750 MYOM3Q5VTT5 1437 aa12.87□□□□□ -0.35
MCF2L2-204ENST00000459750 PLB1Q6P1J6 1458 aa12.87□□□□□ -0.35
MCF2L2-204ENST00000459750 CFDP1Q9UEE9 299 aaPredicted RBP12.87□□□□□ -0.35
MCF2L2-204ENST00000459750 IFT140Q96RY7 1462 aa12.87□□□□□ -0.35
MCF2L2-204ENST00000459750 PRG4Q92954 1404 aaPredicted RBP12.87□□□□□ -0.35
MCF2L2-204ENST00000459750 PBRM1Q86U86 1689 aa12.86□□□□□ -0.35
MCF2L2-204ENST00000459750 LRRIQ1Q96JM4 1722 aa12.86□□□□□ -0.35
MCF2L2-204ENST00000459750 CCDC18Q5T9S5 1454 aa12.86□□□□□ -0.35
MCF2L2-204ENST00000459750 EPRSP07814 1512 aaKnown RBP12.85□□□□□ -0.35
MCF2L2-204ENST00000459750 THOC2Q8NI27 1593 aaKnown RBP12.85□□□□□ -0.35
MCF2L2-204ENST00000459750 CFAP43Q8NDM7 1665 aa12.85□□□□□ -0.35
MCF2L2-204ENST00000459750 SENP3-EIF4A1A0A087X0R7 540 aa12.84□□□□□ -0.35
MCF2L2-204ENST00000459750 PPP1R15AO75807 674 aaPredicted RBP12.84□□□□□ -0.35
MCF2L2-204ENST00000459750 ADAMTS12P58397 1594 aa12.84□□□□□ -0.35
MCF2L2-204ENST00000459750 MAP3K1Q13233 1512 aa12.84□□□□□ -0.35
MCF2L2-204ENST00000459750 EIF4G3O43432 1585 aaKnown RBP12.83□□□□□ -0.36
MCF2L2-204ENST00000459750 CDK11AQ9UQ88 783 aaPredicted RBP12.83□□□□□ -0.36
MCF2L2-204ENST00000459750 GRIN2AQ12879 1464 aa12.83□□□□□ -0.36
MCF2L2-204ENST00000459750 SAMD9Q5K651 1589 aa12.83□□□□□ -0.36
MCF2L2-204ENST00000459750 SLC4A1APQ9BWU0 796 aaKnown RBP12.82□□□□□ -0.36
MCF2L2-204ENST00000459750 NAIPQ13075 1403 aa12.81□□□□□ -0.36
MCF2L2-204ENST00000459750 MPHOSPH9Q99550 1183 aa12.81□□□□□ -0.36
MCF2L2-204ENST00000459750 HNRNPMP52272 730 aaKnown RBP eCLIP12.8□□□□□ -0.36
MCF2L2-204ENST00000459750 PLEKHD1A6NEE1 506 aa12.8□□□□□ -0.36
MCF2L2-204ENST00000459750 DISP1Q96F81 1524 aa12.8□□□□□ -0.36
MCF2L2-204ENST00000459750 WDR62O43379 1518 aa12.78□□□□□ -0.36
MCF2L2-204ENST00000459750 KIAA0586Q9BVV6 1533 aa12.78□□□□□ -0.36
MCF2L2-204ENST00000459750 BCANQ96GW7 911 aa12.77□□□□□ -0.36
MCF2L2-204ENST00000459750 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.77□□□□□ -0.36
MCF2L2-204ENST00000459750 L3MBTL2Q969R5 705 aa12.77□□□□□ -0.37
MCF2L2-204ENST00000459750 NUP153P49790 1475 aaKnown RBP12.77□□□□□ -0.37
MCF2L2-204ENST00000459750 PTPN23Q9H3S7 1636 aa12.76□□□□□ -0.37
MCF2L2-204ENST00000459750 KDM2AQ9Y2K7 1162 aa12.76□□□□□ -0.37
MCF2L2-204ENST00000459750 SUPT6HQ7KZ85 1726 aaKnown RBP12.76□□□□□ -0.37
MCF2L2-204ENST00000459750 HFM1A2PYH4 1435 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms