RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 FGD5Q6ZNL6 1462 aa14.96□□□□□ -0.01
VPS50-207ENST00000458530 CHMP7Q8WUX9 453 aaPredicted RBP14.94□□□□□ -0.02
VPS50-207ENST00000458530 GAPVD1Q14C86 1478 aa14.94□□□□□ -0.02
VPS50-207ENST00000458530 CUX1P39880 1505 aa14.92□□□□□ -0.02
VPS50-207ENST00000458530 PBRM1Q86U86 1689 aa14.83□□□□□ -0.04
VPS50-207ENST00000458530 ABCA10Q8WWZ4 1543 aa14.82□□□□□ -0.04
VPS50-207ENST00000458530 ERCC6L2Q5T890 1561 aa14.82□□□□□ -0.04
VPS50-207ENST00000458530 ABCA5Q8WWZ7 1642 aa14.82□□□□□ -0.04
VPS50-207ENST00000458530 NUP160Q12769 1436 aa14.8□□□□□ -0.04
VPS50-207ENST00000458530 WRNQ14191 1432 aaPredicted RBP eCLIP14.8□□□□□ -0.04
VPS50-207ENST00000458530 GRIN2AQ12879 1464 aa14.77□□□□□ -0.04
VPS50-207ENST00000458530 SHROOM2Q13796 1616 aa14.77□□□□□ -0.05
VPS50-207ENST00000458530 BIVM-ERCC5R4GMW8 1640 aa14.77□□□□□ -0.05
VPS50-207ENST00000458530 CEP170Q5SW79 1584 aa14.77□□□□□ -0.05
VPS50-207ENST00000458530 RNF39Q9H2S5 420 aa14.75□□□□□ -0.05
VPS50-207ENST00000458530 TOP2BQ02880 1626 aa14.74□□□□□ -0.05
VPS50-207ENST00000458530 ADAMTS12P58397 1594 aa14.72□□□□□ -0.05
VPS50-207ENST00000458530 KIF13AQ9H1H9 1805 aa14.71□□□□□ -0.05
VPS50-207ENST00000458530 CACNB1Q02641 598 aaPredicted RBP14.7□□□□□ -0.06
VPS50-207ENST00000458530 FHAD1B1AJZ9 1412 aa14.66□□□□□ -0.06
VPS50-207ENST00000458530 EEA1Q15075 1411 aa14.66□□□□□ -0.06
VPS50-207ENST00000458530 ABCC10Q5T3U5 1492 aa14.63□□□□□ -0.07
VPS50-207ENST00000458530 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS50-207ENST00000458530 ERICH3Q5RHP9 1530 aa14.61□□□□□ -0.07
VPS50-207ENST00000458530 MAPKBP1O60336 1514 aa14.61□□□□□ -0.07
VPS50-207ENST00000458530 PRG4Q92954 1404 aaPredicted RBP14.6□□□□□ -0.07
VPS50-207ENST00000458530 KDM4FA0A1W2PPD8 638 aa14.57□□□□□ -0.08
VPS50-207ENST00000458530 DIP2BQ9P265 1576 aa14.56□□□□□ -0.08
VPS50-207ENST00000458530 JPH4Q96JJ6 628 aa14.55□□□□□ -0.08
VPS50-207ENST00000458530 FAM69CQ0P6D2 419 aa14.54□□□□□ -0.08
VPS50-207ENST00000458530 RUSC2Q8N2Y8 1516 aa14.52□□□□□ -0.08
VPS50-207ENST00000458530 ADCY10Q96PN6 1610 aa14.52□□□□□ -0.09
VPS50-207ENST00000458530 C1QBPQ07021 282 aaKnown RBP14.48□□□□□ -0.09
VPS50-207ENST00000458530 FAM9AQ8IZU1 332 aaPredicted RBP14.48□□□□□ -0.09
VPS50-207ENST00000458530 KDM6BO15054 1643 aa14.48□□□□□ -0.09
VPS50-207ENST00000458530 ILDR1Q86SU0 546 aaPredicted RBP14.47□□□□□ -0.09
VPS50-207ENST00000458530 KIF21BO75037 1637 aa14.47□□□□□ -0.09
VPS50-207ENST00000458530 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
VPS50-207ENST00000458530 NPM1P06748 294 aaKnown RBP eCLIP14.43□□□□□ -0.1
VPS50-207ENST00000458530 KIAA0586Q9BVV6 1533 aa14.42□□□□□ -0.1
VPS50-207ENST00000458530 CSRNP3Q8WYN3 585 aa14.42□□□□□ -0.1
VPS50-207ENST00000458530 GOLGA3Q08378 1498 aa14.4□□□□□ -0.1
VPS50-207ENST00000458530 SLC4A2P04920 1241 aa14.4□□□□□ -0.1
VPS50-207ENST00000458530 U3KPZ7 1027 aaPredicted RBP14.38□□□□□ -0.11
VPS50-207ENST00000458530 LOC105371045A0A1W2PR82 267 aa14.37□□□□□ -0.11
VPS50-207ENST00000458530 GLI2P10070 1586 aa14.36□□□□□ -0.11
VPS50-207ENST00000458530 PPRC1Q5VV67 1664 aaKnown RBP14.36□□□□□ -0.11
VPS50-207ENST00000458530 IGF1RP08069 1367 aa14.34□□□□□ -0.11
VPS50-207ENST00000458530 CUL7Q14999 1698 aa14.34□□□□□ -0.11
VPS50-207ENST00000458530 ABCC2Q92887 1545 aa14.34□□□□□ -0.11
VPS50-207ENST00000458530 TSPOAP1O95153 1857 aa14.33□□□□□ -0.11
VPS50-207ENST00000458530 ADGRL1O94910 1474 aa14.32□□□□□ -0.12
VPS50-207ENST00000458530 COL17A1Q9UMD9 1497 aaPredicted RBP14.31□□□□□ -0.12
VPS50-207ENST00000458530 PTPRGP23470 1445 aa14.31□□□□□ -0.12
VPS50-207ENST00000458530 UHRF1BP1LA0JNW5 1464 aa14.31□□□□□ -0.12
VPS50-207ENST00000458530 PLB1Q6P1J6 1458 aa14.31□□□□□ -0.12
VPS50-207ENST00000458530 PRXQ9BXM0 1461 aa14.31□□□□□ -0.12
VPS50-207ENST00000458530 TNIKQ9UKE5 1360 aa14.3□□□□□ -0.12
VPS50-207ENST00000458530 ASXL2Q76L83 1435 aa14.3□□□□□ -0.12
VPS50-207ENST00000458530 HECW2Q9P2P5 1572 aa14.26□□□□□ -0.13
VPS50-207ENST00000458530 RAPGEF2Q9Y4G8 1499 aa14.25□□□□□ -0.13
VPS50-207ENST00000458530 MAP3K4Q9Y6R4 1608 aa14.24□□□□□ -0.13
VPS50-207ENST00000458530 UBTFP17480 764 aaKnown RBP14.24□□□□□ -0.13
VPS50-207ENST00000458530 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
VPS50-207ENST00000458530 EPRSP07814 1512 aaKnown RBP14.23□□□□□ -0.13
VPS50-207ENST00000458530 KDM5BQ9UGL1 1544 aa14.23□□□□□ -0.13
VPS50-207ENST00000458530 EHMT2Q96KQ7 1210 aa14.22□□□□□ -0.13
VPS50-207ENST00000458530 CARMIL2Q6F5E8 1435 aa14.22□□□□□ -0.13
VPS50-207ENST00000458530 UACAQ9BZF9 1416 aa14.22□□□□□ -0.13
VPS50-207ENST00000458530 CEP162Q5TB80 1403 aa14.21□□□□□ -0.13
VPS50-207ENST00000458530 CARMIL1Q5VZK9 1371 aa14.21□□□□□ -0.14
VPS50-207ENST00000458530 DISP1Q96F81 1524 aa14.2□□□□□ -0.14
VPS50-207ENST00000458530 CTTNBP2Q8WZ74 1663 aa14.19□□□□□ -0.14
VPS50-207ENST00000458530 TEX14Q8IWB6 1497 aa14.18□□□□□ -0.14
VPS50-207ENST00000458530 IQGAP2Q13576 1575 aa14.18□□□□□ -0.14
VPS50-207ENST00000458530 SPINK5Q9NQ38 1064 aaPredicted RBP14.15□□□□□ -0.14
VPS50-207ENST00000458530 UGGT2Q9NYU1 1516 aa14.14□□□□□ -0.15
VPS50-207ENST00000458530 ZCCHC11Q5TAX3 1644 aaKnown RBP14.12□□□□□ -0.15
VPS50-207ENST00000458530 CLIP1P30622 1438 aa14.12□□□□□ -0.15
VPS50-207ENST00000458530 WDR7Q9Y4E6 1490 aa14.11□□□□□ -0.15
VPS50-207ENST00000458530 MAGI3Q5TCQ9 1506 aa14.1□□□□□ -0.15
VPS50-207ENST00000458530 TTBK1Q5TCY1 1321 aaPredicted RBP14.08□□□□□ -0.16
VPS50-207ENST00000458530 KIAA0556O60303 1618 aa14.08□□□□□ -0.16
VPS50-207ENST00000458530 CAPN15O75808 1086 aa14.07□□□□□ -0.16
VPS50-207ENST00000458530 FBXO41Q8TF61 875 aa14.07□□□□□ -0.16
VPS50-207ENST00000458530 EFCAB5A4FU69 1503 aa14.05□□□□□ -0.16
VPS50-207ENST00000458530 CFAP43Q8NDM7 1665 aa14.04□□□□□ -0.16
VPS50-207ENST00000458530 CD109Q6YHK3 1445 aa14.03□□□□□ -0.16
VPS50-207ENST00000458530 ARAP3Q8WWN8 1544 aa14.01□□□□□ -0.17
VPS50-207ENST00000458530 VPS8Q8N3P4 1428 aa14.01□□□□□ -0.17
VPS50-207ENST00000458530 ABCA8O94911 1581 aa14□□□□□ -0.17
VPS50-207ENST00000458530 ADAMTSL3P82987 1691 aa13.98□□□□□ -0.17
VPS50-207ENST00000458530 ARHGAP35Q9NRY4 1499 aa13.97□□□□□ -0.17
VPS50-207ENST00000458530 PTPRMP28827 1452 aa13.96□□□□□ -0.17
VPS50-207ENST00000458530 SAMD9Q5K651 1589 aa13.95□□□□□ -0.18
VPS50-207ENST00000458530 PHLDB1Q86UU1 1377 aa13.93□□□□□ -0.18
VPS50-207ENST00000458530 RANGAP1P46060 587 aaPredicted RBP13.92□□□□□ -0.18
VPS50-207ENST00000458530 MYCNP04198 464 aaPredicted RBP13.91□□□□□ -0.18
VPS50-207ENST00000458530 DSG3P32926 999 aa13.91□□□□□ -0.18
VPS50-207ENST00000458530 FOXD4L1Q9NU39 408 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms