RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 GOLGA3Q08378 1498 aa27.71■■■□□ 2.03
TRIM39-211ENST00000458516 KIAA0586Q9BVV6 1533 aa27.63■■■□□ 2.01
TRIM39-211ENST00000458516 IQGAP2Q13576 1575 aa27.6■■■□□ 2.01
TRIM39-211ENST00000458516 EHMT2Q96KQ7 1210 aa27.59■■■□□ 2.01
TRIM39-211ENST00000458516 SHROOM2Q13796 1616 aa27.58■■■□□ 2.01
TRIM39-211ENST00000458516 UBTFP17480 764 aaKnown RBP27.49■■□□□ 1.99
TRIM39-211ENST00000458516 UGGT2Q9NYU1 1516 aa27.46■■□□□ 1.99
TRIM39-211ENST00000458516 LOC105371045A0A1W2PR82 267 aa27.44■■□□□ 1.98
TRIM39-211ENST00000458516 JPH4Q96JJ6 628 aa27.44■■□□□ 1.98
TRIM39-211ENST00000458516 TNIKQ9UKE5 1360 aa27.43■■□□□ 1.98
TRIM39-211ENST00000458516 ERCC6L2Q5T890 1561 aa27.4■■□□□ 1.98
TRIM39-211ENST00000458516 PRG4Q92954 1404 aaPredicted RBP27.38■■□□□ 1.97
TRIM39-211ENST00000458516 ARHGEF11O15085 1522 aa27.37■■□□□ 1.97
TRIM39-211ENST00000458516 RIMBP3CA6NJZ7 1639 aa27.36■■□□□ 1.97
TRIM39-211ENST00000458516 RIMBP3BA6NNM3 1639 aa27.36■■□□□ 1.97
TRIM39-211ENST00000458516 RIMBP3Q9UFD9 1639 aa27.36■■□□□ 1.97
TRIM39-211ENST00000458516 DISP1Q96F81 1524 aa27.36■■□□□ 1.97
TRIM39-211ENST00000458516 SAMD9Q5K651 1589 aa27.35■■□□□ 1.97
TRIM39-211ENST00000458516 KIAA0556O60303 1618 aa27.35■■□□□ 1.97
TRIM39-211ENST00000458516 EFCAB5A4FU69 1503 aa27.29■■□□□ 1.96
TRIM39-211ENST00000458516 CARMIL2Q6F5E8 1435 aa27.28■■□□□ 1.96
TRIM39-211ENST00000458516 RANGAP1P46060 587 aaPredicted RBP27.26■■□□□ 1.95
TRIM39-211ENST00000458516 ARHGAP35Q9NRY4 1499 aa27.23■■□□□ 1.95
TRIM39-211ENST00000458516 CEP162Q5TB80 1403 aa27.23■■□□□ 1.95
TRIM39-211ENST00000458516 ARAP1Q96P48 1450 aa27.2■■□□□ 1.95
TRIM39-211ENST00000458516 CLIP1P30622 1438 aa27.2■■□□□ 1.94
TRIM39-211ENST00000458516 FHOD3Q2V2M9 1422 aa27.16■■□□□ 1.94
TRIM39-211ENST00000458516 P3H3Q8IVL6 736 aa27.14■■□□□ 1.94
TRIM39-211ENST00000458516 PTPRGP23470 1445 aa27.09■■□□□ 1.93
TRIM39-211ENST00000458516 TTBK1Q5TCY1 1321 aaPredicted RBP27.03■■□□□ 1.92
TRIM39-211ENST00000458516 ABCA8O94911 1581 aa27.01■■□□□ 1.91
TRIM39-211ENST00000458516 CYB5RLQ6IPT4 315 aa26.99■■□□□ 1.91
TRIM39-211ENST00000458516 PLB1Q6P1J6 1458 aa26.98■■□□□ 1.91
TRIM39-211ENST00000458516 FMN1Q68DA7 1419 aa26.98■■□□□ 1.91
TRIM39-211ENST00000458516 RAPGEF6Q8TEU7 1601 aa26.98■■□□□ 1.91
TRIM39-211ENST00000458516 ADCY10Q96PN6 1610 aa26.98■■□□□ 1.91
TRIM39-211ENST00000458516 UACAQ9BZF9 1416 aa26.97■■□□□ 1.91
TRIM39-211ENST00000458516 ABCC2Q92887 1545 aa26.95■■□□□ 1.9
TRIM39-211ENST00000458516 UHRF1BP1LA0JNW5 1464 aa26.93■■□□□ 1.9
TRIM39-211ENST00000458516 PCF11O94913 1555 aaKnown RBP26.92■■□□□ 1.9
TRIM39-211ENST00000458516 HECW1Q76N89 1606 aa26.87■■□□□ 1.89
TRIM39-211ENST00000458516 VPS8Q8N3P4 1428 aa26.86■■□□□ 1.89
TRIM39-211ENST00000458516 NUP153P49790 1475 aaKnown RBP26.85■■□□□ 1.89
TRIM39-211ENST00000458516 LRRIQ1Q96JM4 1722 aa26.85■■□□□ 1.89
TRIM39-211ENST00000458516 CASKIN1Q8WXD9 1431 aa26.84■■□□□ 1.89
TRIM39-211ENST00000458516 FYCO1Q9BQS8 1478 aa26.83■■□□□ 1.89
TRIM39-211ENST00000458516 ZCCHC11Q5TAX3 1644 aaKnown RBP26.81■■□□□ 1.88
TRIM39-211ENST00000458516 KDM5BQ9UGL1 1544 aa26.8■■□□□ 1.88
TRIM39-211ENST00000458516 EPRSP07814 1512 aaKnown RBP26.74■■□□□ 1.87
TRIM39-211ENST00000458516 ATP10BO94823 1461 aa26.74■■□□□ 1.87
TRIM39-211ENST00000458516 CDK13Q14004 1512 aaKnown RBP26.73■■□□□ 1.87
TRIM39-211ENST00000458516 ARID3CA6NKF2 412 aa26.7■■□□□ 1.86
TRIM39-211ENST00000458516 ATP1B4Q9UN42 357 aaPredicted RBP26.7■■□□□ 1.86
TRIM39-211ENST00000458516 CCDC18Q5T9S5 1454 aa26.69■■□□□ 1.86
TRIM39-211ENST00000458516 CFAP43Q8NDM7 1665 aa26.67■■□□□ 1.86
TRIM39-211ENST00000458516 MAPKBP1O60336 1514 aa26.67■■□□□ 1.86
TRIM39-211ENST00000458516 NPM1P06748 294 aaKnown RBP eCLIP26.65■■□□□ 1.86
TRIM39-211ENST00000458516 TIAM1Q13009 1591 aa26.61■■□□□ 1.85
TRIM39-211ENST00000458516 ASXL2Q76L83 1435 aa26.6■■□□□ 1.85
TRIM39-211ENST00000458516 MAP3K1Q13233 1512 aa26.57■■□□□ 1.84
TRIM39-211ENST00000458516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.57■■□□□ 1.84
TRIM39-211ENST00000458516 HNRNPUL2Q1KMD3 747 aaKnown RBP26.57■■□□□ 1.84
TRIM39-211ENST00000458516 WDR7Q9Y4E6 1490 aa26.56■■□□□ 1.84
TRIM39-211ENST00000458516 MAGI3Q5TCQ9 1506 aa26.56■■□□□ 1.84
TRIM39-211ENST00000458516 DIP2BQ9P265 1576 aa26.5■■□□□ 1.83
TRIM39-211ENST00000458516 KIF13AQ9H1H9 1805 aa26.49■■□□□ 1.83
TRIM39-211ENST00000458516 TROQ12816 1431 aaPredicted RBP26.48■■□□□ 1.83
TRIM39-211ENST00000458516 PLEKHD1A6NEE1 506 aa26.48■■□□□ 1.83
TRIM39-211ENST00000458516 CDK11AQ9UQ88 783 aaPredicted RBP26.47■■□□□ 1.83
TRIM39-211ENST00000458516 EHBP1L1Q8N3D4 1523 aa26.47■■□□□ 1.83
TRIM39-211ENST00000458516 ABCC10Q5T3U5 1492 aa26.45■■□□□ 1.82
TRIM39-211ENST00000458516 KIF14Q15058 1648 aa26.45■■□□□ 1.82
TRIM39-211ENST00000458516 LRRC9Q6ZRR7 1453 aa26.44■■□□□ 1.82
TRIM39-211ENST00000458516 APLP2Q06481 763 aa26.43■■□□□ 1.82
TRIM39-211ENST00000458516 GLI2P10070 1586 aa26.42■■□□□ 1.82
TRIM39-211ENST00000458516 MTUS2Q5JR59 1369 aa26.42■■□□□ 1.82
TRIM39-211ENST00000458516 ABCA9Q8IUA7 1624 aa26.39■■□□□ 1.82
TRIM39-211ENST00000458516 KANK4Q5T7N3 995 aaPredicted RBP26.39■■□□□ 1.82
TRIM39-211ENST00000458516 KCNH8Q96L42 1107 aa26.38■■□□□ 1.81
TRIM39-211ENST00000458516 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.38■■□□□ 1.81
TRIM39-211ENST00000458516 TTC37Q6PGP7 1564 aa26.37■■□□□ 1.81
TRIM39-211ENST00000458516 SUPT6HQ7KZ85 1726 aaKnown RBP26.37■■□□□ 1.81
TRIM39-211ENST00000458516 MAP3K4Q9Y6R4 1608 aa26.36■■□□□ 1.81
TRIM39-211ENST00000458516 FAM69CQ0P6D2 419 aa26.31■■□□□ 1.8
TRIM39-211ENST00000458516 MYO5CQ9NQX4 1742 aa26.29■■□□□ 1.8
TRIM39-211ENST00000458516 NCOA2Q15596 1464 aa26.29■■□□□ 1.8
TRIM39-211ENST00000458516 CDC42BPAQ5VT25 1732 aa26.28■■□□□ 1.8
TRIM39-211ENST00000458516 TSPOAP1O95153 1857 aa26.28■■□□□ 1.8
TRIM39-211ENST00000458516 PPRC1Q5VV67 1664 aaKnown RBP26.28■■□□□ 1.8
TRIM39-211ENST00000458516 PREX2Q70Z35 1606 aa26.25■■□□□ 1.79
TRIM39-211ENST00000458516 TRHP20396 242 aaPredicted RBP26.24■■□□□ 1.79
TRIM39-211ENST00000458516 CDC42BPBQ9Y5S2 1711 aa26.23■■□□□ 1.79
TRIM39-211ENST00000458516 CD109Q6YHK3 1445 aa26.22■■□□□ 1.79
TRIM39-211ENST00000458516 ITSN2Q9NZM3 1697 aa26.22■■□□□ 1.79
TRIM39-211ENST00000458516 PPARGC1BQ86YN6 1023 aaKnown RBP26.2■■□□□ 1.78
TRIM39-211ENST00000458516 ARAP3Q8WWN8 1544 aa26.19■■□□□ 1.78
TRIM39-211ENST00000458516 GPATCH8Q9UKJ3 1502 aaKnown RBP26.19■■□□□ 1.78
TRIM39-211ENST00000458516 CCNB3Q8WWL7 1395 aa26.18■■□□□ 1.78
TRIM39-211ENST00000458516 PLCH2O75038 1416 aa26.17■■□□□ 1.78
TRIM39-211ENST00000458516 PHLDB1Q86UU1 1377 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms