RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 WDR62O43379 1518 aa18.68■□□□□ 0.58
LINC00959-201ENST00000456581 P3H3Q8IVL6 736 aa18.67■□□□□ 0.58
LINC00959-201ENST00000456581 ERCC6Q03468 1493 aa18.64■□□□□ 0.57
LINC00959-201ENST00000456581 MRC2Q9UBG0 1479 aa18.63■□□□□ 0.57
LINC00959-201ENST00000456581 ZNF316A6NFI3 1004 aaPredicted RBP18.54■□□□□ 0.56
LINC00959-201ENST00000456581 WDR97A6NE52 1622 aa18.53■□□□□ 0.56
LINC00959-201ENST00000456581 GAPVD1Q14C86 1478 aa18.53■□□□□ 0.56
LINC00959-201ENST00000456581 CENPBP07199 599 aaPredicted RBP18.53■□□□□ 0.56
LINC00959-201ENST00000456581 MIER1Q8N108 512 aa18.53■□□□□ 0.56
LINC00959-201ENST00000456581 ATP1B4Q9UN42 357 aaPredicted RBP18.53■□□□□ 0.56
LINC00959-201ENST00000456581 FHOD3Q2V2M9 1422 aa18.49■□□□□ 0.55
LINC00959-201ENST00000456581 ABCA5Q8WWZ7 1642 aa18.49■□□□□ 0.55
LINC00959-201ENST00000456581 AQRO60306 1485 aaKnown RBP eCLIP18.48■□□□□ 0.55
LINC00959-201ENST00000456581 TARBP1Q13395 1621 aaKnown RBP18.46■□□□□ 0.55
LINC00959-201ENST00000456581 CUL7Q14999 1698 aa18.46■□□□□ 0.55
LINC00959-201ENST00000456581 ITGAEP38570 1179 aa18.42■□□□□ 0.54
LINC00959-201ENST00000456581 ZNF608Q9ULD9 1512 aaPredicted RBP18.4■□□□□ 0.54
LINC00959-201ENST00000456581 CTTNBP2Q8WZ74 1663 aa18.38■□□□□ 0.53
LINC00959-201ENST00000456581 PCF11O94913 1555 aaKnown RBP18.38■□□□□ 0.53
LINC00959-201ENST00000456581 TIAM1Q13009 1591 aa18.36■□□□□ 0.53
LINC00959-201ENST00000456581 FHAD1B1AJZ9 1412 aa18.34■□□□□ 0.53
LINC00959-201ENST00000456581 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
LINC00959-201ENST00000456581 RRBP1Q9P2E9 1410 aaKnown RBP18.32■□□□□ 0.52
LINC00959-201ENST00000456581 PBRM1Q86U86 1689 aa18.31■□□□□ 0.52
LINC00959-201ENST00000456581 CCNB3Q8WWL7 1395 aa18.31■□□□□ 0.52
LINC00959-201ENST00000456581 LRRC9Q6ZRR7 1453 aa18.31■□□□□ 0.52
LINC00959-201ENST00000456581 PHLDB1Q86UU1 1377 aa18.3■□□□□ 0.52
LINC00959-201ENST00000456581 EFCAB5A4FU69 1503 aa18.29■□□□□ 0.52
LINC00959-201ENST00000456581 GRIN2BQ13224 1484 aa18.25■□□□□ 0.51
LINC00959-201ENST00000456581 CASKIN1Q8WXD9 1431 aa18.25■□□□□ 0.51
LINC00959-201ENST00000456581 FAM50AQ14320 339 aaKnown RBP18.25■□□□□ 0.51
LINC00959-201ENST00000456581 MAP3K1Q13233 1512 aa18.24■□□□□ 0.51
LINC00959-201ENST00000456581 ADAMTS12P58397 1594 aa18.24■□□□□ 0.51
LINC00959-201ENST00000456581 ARID3CA6NKF2 412 aa18.23■□□□□ 0.51
LINC00959-201ENST00000456581 FYCO1Q9BQS8 1478 aa18.23■□□□□ 0.51
LINC00959-201ENST00000456581 SNAPC4Q5SXM2 1469 aa18.22■□□□□ 0.51
LINC00959-201ENST00000456581 SAMD9Q5K651 1589 aa18.22■□□□□ 0.51
LINC00959-201ENST00000456581 FMN1Q68DA7 1419 aa18.22■□□□□ 0.51
LINC00959-201ENST00000456581 CFAP43Q8NDM7 1665 aa18.21■□□□□ 0.51
LINC00959-201ENST00000456581 FBLN2P98095 1184 aa18.18■□□□□ 0.5
LINC00959-201ENST00000456581 DHX57Q6P158 1386 aaKnown RBP18.18■□□□□ 0.5
LINC00959-201ENST00000456581 EIF4G3O43432 1585 aaKnown RBP18.17■□□□□ 0.5
LINC00959-201ENST00000456581 LRRIQ1Q96JM4 1722 aa18.17■□□□□ 0.5
LINC00959-201ENST00000456581 IQGAP2Q13576 1575 aa18.15■□□□□ 0.5
LINC00959-201ENST00000456581 MTUS2Q5JR59 1369 aa18.14■□□□□ 0.49
LINC00959-201ENST00000456581 CHMP7Q8WUX9 453 aaPredicted RBP18.1■□□□□ 0.49
LINC00959-201ENST00000456581 RAB3GAP2Q9H2M9 1393 aa18.1■□□□□ 0.49
LINC00959-201ENST00000456581 GRIN2AQ12879 1464 aa18.08■□□□□ 0.49
LINC00959-201ENST00000456581 KCNH8Q96L42 1107 aa18.08■□□□□ 0.48
LINC00959-201ENST00000456581 MYT1Q01538 1121 aa18.06■□□□□ 0.48
LINC00959-201ENST00000456581 MAGI3Q5TCQ9 1506 aa18.06■□□□□ 0.48
LINC00959-201ENST00000456581 CDK13Q14004 1512 aaKnown RBP18.04■□□□□ 0.48
LINC00959-201ENST00000456581 KIAA0586Q9BVV6 1533 aa18.03■□□□□ 0.48
LINC00959-201ENST00000456581 FGD6Q6ZV73 1430 aa18.03■□□□□ 0.48
LINC00959-201ENST00000456581 NCOA2Q15596 1464 aa18.02■□□□□ 0.48
LINC00959-201ENST00000456581 DISP1Q96F81 1524 aa18.02■□□□□ 0.47
LINC00959-201ENST00000456581 UGGT2Q9NYU1 1516 aa18.01■□□□□ 0.47
LINC00959-201ENST00000456581 SETD5Q9C0A6 1442 aa18.01■□□□□ 0.47
LINC00959-201ENST00000456581 CEP170Q5SW79 1584 aa17.99■□□□□ 0.47
LINC00959-201ENST00000456581 MAGI1Q96QZ7 1491 aaPredicted RBP17.99■□□□□ 0.47
LINC00959-201ENST00000456581 EPRSP07814 1512 aaKnown RBP17.99■□□□□ 0.47
LINC00959-201ENST00000456581 PTPRKQ15262 1439 aa17.98■□□□□ 0.47
LINC00959-201ENST00000456581 SYNJ2O15056 1496 aa17.98■□□□□ 0.47
LINC00959-201ENST00000456581 KIAA0556O60303 1618 aa17.96■□□□□ 0.47
LINC00959-201ENST00000456581 SUPT16HQ9Y5B9 1047 aaKnown RBP17.96■□□□□ 0.47
LINC00959-201ENST00000456581 MYOM3Q5VTT5 1437 aa17.95■□□□□ 0.46
LINC00959-201ENST00000456581 CLSPNQ9HAW4 1339 aa17.95■□□□□ 0.46
LINC00959-201ENST00000456581 HECW1Q76N89 1606 aa17.95■□□□□ 0.46
LINC00959-201ENST00000456581 JPH4Q96JJ6 628 aa17.94■□□□□ 0.46
LINC00959-201ENST00000456581 EHBP1L1Q8N3D4 1523 aa17.93■□□□□ 0.46
LINC00959-201ENST00000456581 SIN3AQ96ST3 1273 aa17.93■□□□□ 0.46
LINC00959-201ENST00000456581 SUPT6HQ7KZ85 1726 aaKnown RBP17.93■□□□□ 0.46
LINC00959-201ENST00000456581 CHIC2Q9UKJ5 165 aa17.93■□□□□ 0.46
LINC00959-201ENST00000456581 MAPKBP1O60336 1514 aa17.92■□□□□ 0.46
LINC00959-201ENST00000456581 CCDC18Q5T9S5 1454 aa17.92■□□□□ 0.46
LINC00959-201ENST00000456581 NUP153P49790 1475 aaKnown RBP17.9■□□□□ 0.46
LINC00959-201ENST00000456581 PLB1Q6P1J6 1458 aa17.89■□□□□ 0.45
LINC00959-201ENST00000456581 DNAJC5Q9H3Z4 198 aa17.89■□□□□ 0.45
LINC00959-201ENST00000456581 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.89■□□□□ 0.45
LINC00959-201ENST00000456581 RRP7BPQ9NSQ0 103 aa17.88■□□□□ 0.45
LINC00959-201ENST00000456581 NUP160Q12769 1436 aa17.87■□□□□ 0.45
LINC00959-201ENST00000456581 BCANQ96GW7 911 aa17.87■□□□□ 0.45
LINC00959-201ENST00000456581 ARHGEF11O15085 1522 aa17.87■□□□□ 0.45
LINC00959-201ENST00000456581 HIRIP3Q9BW71 556 aaPredicted RBP17.86■□□□□ 0.45
LINC00959-201ENST00000456581 PTPN23Q9H3S7 1636 aa17.86■□□□□ 0.45
LINC00959-201ENST00000456581 ZNF644Q9H582 1327 aaPredicted RBP17.85■□□□□ 0.45
LINC00959-201ENST00000456581 RAPGEF6Q8TEU7 1601 aa17.84■□□□□ 0.45
LINC00959-201ENST00000456581 PRG4Q92954 1404 aaPredicted RBP17.82■□□□□ 0.44
LINC00959-201ENST00000456581 NAIPQ13075 1403 aa17.8■□□□□ 0.44
LINC00959-201ENST00000456581 HFM1A2PYH4 1435 aa17.79■□□□□ 0.44
LINC00959-201ENST00000456581 TSHZ2Q9NRE2 1034 aa17.79■□□□□ 0.44
LINC00959-201ENST00000456581 CARMIL2Q6F5E8 1435 aa17.79■□□□□ 0.44
LINC00959-201ENST00000456581 CLASP1Q7Z460 1538 aa17.78■□□□□ 0.44
LINC00959-201ENST00000456581 CHD1O14646 1710 aa17.78■□□□□ 0.44
LINC00959-201ENST00000456581 DDX10Q13206 875 aaKnown RBP17.76■□□□□ 0.43
LINC00959-201ENST00000456581 CDK11AQ9UQ88 783 aaPredicted RBP17.75■□□□□ 0.43
LINC00959-201ENST00000456581 TCOF1Q13428 1488 aaKnown RBP17.74■□□□□ 0.43
LINC00959-201ENST00000456581 ZNF777Q9ULD5 760 aaPredicted RBP17.74■□□□□ 0.43
LINC00959-201ENST00000456581 KDM6BO15054 1643 aa17.72■□□□□ 0.43
LINC00959-201ENST00000456581 MIA2Q96PC5 1412 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms