RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 GOLGA3Q08378 1498 aa19.55■□□□□ 0.72
LINC00339-205ENST00000452322 CTTNBP2Q8WZ74 1663 aa19.53■□□□□ 0.72
LINC00339-205ENST00000452322 DNAJC5Q9H3Z4 198 aa19.52■□□□□ 0.72
LINC00339-205ENST00000452322 SHROOM2Q13796 1616 aa19.51■□□□□ 0.71
LINC00339-205ENST00000452322 IQGAP2Q13576 1575 aa19.51■□□□□ 0.71
LINC00339-205ENST00000452322 JPH4Q96JJ6 628 aa19.45■□□□□ 0.7
LINC00339-205ENST00000452322 ARHGEF11O15085 1522 aa19.43■□□□□ 0.7
LINC00339-205ENST00000452322 EHMT2Q96KQ7 1210 aa19.43■□□□□ 0.7
LINC00339-205ENST00000452322 UBTFP17480 764 aaKnown RBP19.42■□□□□ 0.7
LINC00339-205ENST00000452322 UGGT2Q9NYU1 1516 aa19.41■□□□□ 0.7
LINC00339-205ENST00000452322 PRG4Q92954 1404 aaPredicted RBP19.41■□□□□ 0.7
LINC00339-205ENST00000452322 RIMBP3CA6NJZ7 1639 aa19.4■□□□□ 0.7
LINC00339-205ENST00000452322 RIMBP3BA6NNM3 1639 aa19.4■□□□□ 0.7
LINC00339-205ENST00000452322 RIMBP3Q9UFD9 1639 aa19.4■□□□□ 0.7
LINC00339-205ENST00000452322 ERCC6L2Q5T890 1561 aa19.37■□□□□ 0.69
LINC00339-205ENST00000452322 CARMIL2Q6F5E8 1435 aa19.35■□□□□ 0.69
LINC00339-205ENST00000452322 TNIKQ9UKE5 1360 aa19.35■□□□□ 0.69
LINC00339-205ENST00000452322 DISP1Q96F81 1524 aa19.34■□□□□ 0.69
LINC00339-205ENST00000452322 KIAA0556O60303 1618 aa19.32■□□□□ 0.68
LINC00339-205ENST00000452322 SAMD9Q5K651 1589 aa19.31■□□□□ 0.68
LINC00339-205ENST00000452322 ARAP1Q96P48 1450 aa19.29■□□□□ 0.68
LINC00339-205ENST00000452322 EFCAB5A4FU69 1503 aa19.29■□□□□ 0.68
LINC00339-205ENST00000452322 LOC105371045A0A1W2PR82 267 aa19.29■□□□□ 0.68
LINC00339-205ENST00000452322 RANGAP1P46060 587 aaPredicted RBP19.24■□□□□ 0.67
LINC00339-205ENST00000452322 PTPRGP23470 1445 aa19.21■□□□□ 0.67
LINC00339-205ENST00000452322 ARHGAP35Q9NRY4 1499 aa19.2■□□□□ 0.66
LINC00339-205ENST00000452322 CYB5RLQ6IPT4 315 aa19.19■□□□□ 0.66
LINC00339-205ENST00000452322 CLIP1P30622 1438 aa19.19■□□□□ 0.66
LINC00339-205ENST00000452322 P3H3Q8IVL6 736 aa19.18■□□□□ 0.66
LINC00339-205ENST00000452322 FHOD3Q2V2M9 1422 aa19.17■□□□□ 0.66
LINC00339-205ENST00000452322 CEP162Q5TB80 1403 aa19.17■□□□□ 0.66
LINC00339-205ENST00000452322 TTBK1Q5TCY1 1321 aaPredicted RBP19.14■□□□□ 0.65
LINC00339-205ENST00000452322 UACAQ9BZF9 1416 aa19.11■□□□□ 0.65
LINC00339-205ENST00000452322 FMN1Q68DA7 1419 aa19.09■□□□□ 0.65
LINC00339-205ENST00000452322 ABCA8O94911 1581 aa19.09■□□□□ 0.65
LINC00339-205ENST00000452322 UHRF1BP1LA0JNW5 1464 aa19.08■□□□□ 0.65
LINC00339-205ENST00000452322 ADCY10Q96PN6 1610 aa19.08■□□□□ 0.65
LINC00339-205ENST00000452322 ABCC2Q92887 1545 aa19.08■□□□□ 0.64
LINC00339-205ENST00000452322 PLB1Q6P1J6 1458 aa19.08■□□□□ 0.64
LINC00339-205ENST00000452322 RAPGEF6Q8TEU7 1601 aa19.05■□□□□ 0.64
LINC00339-205ENST00000452322 KDM5BQ9UGL1 1544 aa18.99■□□□□ 0.63
LINC00339-205ENST00000452322 NUP153P49790 1475 aaKnown RBP18.97■□□□□ 0.63
LINC00339-205ENST00000452322 PCF11O94913 1555 aaKnown RBP18.97■□□□□ 0.63
LINC00339-205ENST00000452322 HECW1Q76N89 1606 aa18.97■□□□□ 0.63
LINC00339-205ENST00000452322 CASKIN1Q8WXD9 1431 aa18.97■□□□□ 0.63
LINC00339-205ENST00000452322 NPM1P06748 294 aaKnown RBP eCLIP18.96■□□□□ 0.63
LINC00339-205ENST00000452322 FYCO1Q9BQS8 1478 aa18.95■□□□□ 0.62
LINC00339-205ENST00000452322 ZCCHC11Q5TAX3 1644 aaKnown RBP18.95■□□□□ 0.62
LINC00339-205ENST00000452322 VPS8Q8N3P4 1428 aa18.93■□□□□ 0.62
LINC00339-205ENST00000452322 MAPKBP1O60336 1514 aa18.92■□□□□ 0.62
LINC00339-205ENST00000452322 ATP10BO94823 1461 aa18.92■□□□□ 0.62
LINC00339-205ENST00000452322 EPRSP07814 1512 aaKnown RBP18.89■□□□□ 0.62
LINC00339-205ENST00000452322 ATP1B4Q9UN42 357 aaPredicted RBP18.88■□□□□ 0.61
LINC00339-205ENST00000452322 CCDC18Q5T9S5 1454 aa18.88■□□□□ 0.61
LINC00339-205ENST00000452322 ARID3CA6NKF2 412 aa18.87■□□□□ 0.61
LINC00339-205ENST00000452322 LRRIQ1Q96JM4 1722 aa18.87■□□□□ 0.61
LINC00339-205ENST00000452322 CDK13Q14004 1512 aaKnown RBP18.86■□□□□ 0.61
LINC00339-205ENST00000452322 ASXL2Q76L83 1435 aa18.86■□□□□ 0.61
LINC00339-205ENST00000452322 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.83■□□□□ 0.61
LINC00339-205ENST00000452322 HNRNPUL2Q1KMD3 747 aaKnown RBP18.83■□□□□ 0.61
LINC00339-205ENST00000452322 WDR7Q9Y4E6 1490 aa18.82■□□□□ 0.6
LINC00339-205ENST00000452322 ABCC10Q5T3U5 1492 aa18.78■□□□□ 0.6
LINC00339-205ENST00000452322 CDK11AQ9UQ88 783 aaPredicted RBP18.78■□□□□ 0.6
LINC00339-205ENST00000452322 CFAP43Q8NDM7 1665 aa18.77■□□□□ 0.6
LINC00339-205ENST00000452322 PLEKHD1A6NEE1 506 aa18.77■□□□□ 0.6
LINC00339-205ENST00000452322 DIP2BQ9P265 1576 aa18.77■□□□□ 0.59
LINC00339-205ENST00000452322 MAP3K1Q13233 1512 aa18.75■□□□□ 0.59
LINC00339-205ENST00000452322 TIAM1Q13009 1591 aa18.75■□□□□ 0.59
LINC00339-205ENST00000452322 TROQ12816 1431 aaPredicted RBP18.73■□□□□ 0.59
LINC00339-205ENST00000452322 GLI2P10070 1586 aa18.73■□□□□ 0.59
LINC00339-205ENST00000452322 KIF13AQ9H1H9 1805 aa18.73■□□□□ 0.59
LINC00339-205ENST00000452322 MAGI3Q5TCQ9 1506 aa18.71■□□□□ 0.59
LINC00339-205ENST00000452322 TRHP20396 242 aaPredicted RBP18.69■□□□□ 0.58
LINC00339-205ENST00000452322 FAM69CQ0P6D2 419 aa18.69■□□□□ 0.58
LINC00339-205ENST00000452322 KCNH8Q96L42 1107 aa18.69■□□□□ 0.58
LINC00339-205ENST00000452322 APLP2Q06481 763 aa18.68■□□□□ 0.58
LINC00339-205ENST00000452322 EHBP1L1Q8N3D4 1523 aa18.68■□□□□ 0.58
LINC00339-205ENST00000452322 KIF14Q15058 1648 aa18.68■□□□□ 0.58
LINC00339-205ENST00000452322 MTUS2Q5JR59 1369 aa18.68■□□□□ 0.58
LINC00339-205ENST00000452322 ABCA9Q8IUA7 1624 aa18.67■□□□□ 0.58
LINC00339-205ENST00000452322 MAP3K4Q9Y6R4 1608 aa18.65■□□□□ 0.58
LINC00339-205ENST00000452322 LRRC9Q6ZRR7 1453 aa18.65■□□□□ 0.58
LINC00339-205ENST00000452322 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.65■□□□□ 0.58
LINC00339-205ENST00000452322 TTC37Q6PGP7 1564 aa18.62■□□□□ 0.57
LINC00339-205ENST00000452322 KANK4Q5T7N3 995 aaPredicted RBP18.6■□□□□ 0.57
LINC00339-205ENST00000452322 CD109Q6YHK3 1445 aa18.6■□□□□ 0.57
LINC00339-205ENST00000452322 SUPT6HQ7KZ85 1726 aaKnown RBP18.59■□□□□ 0.57
LINC00339-205ENST00000452322 PPRC1Q5VV67 1664 aaKnown RBP18.57■□□□□ 0.56
LINC00339-205ENST00000452322 TSPOAP1O95153 1857 aa18.56■□□□□ 0.56
LINC00339-205ENST00000452322 NCOA2Q15596 1464 aa18.56■□□□□ 0.56
LINC00339-205ENST00000452322 MYO5CQ9NQX4 1742 aa18.55■□□□□ 0.56
LINC00339-205ENST00000452322 ARAP3Q8WWN8 1544 aa18.54■□□□□ 0.56
LINC00339-205ENST00000452322 TEX14Q8IWB6 1497 aa18.54■□□□□ 0.56
LINC00339-205ENST00000452322 PLCH2O75038 1416 aa18.53■□□□□ 0.56
LINC00339-205ENST00000452322 PREX2Q70Z35 1606 aa18.52■□□□□ 0.56
LINC00339-205ENST00000452322 CDC42BPAQ5VT25 1732 aa18.52■□□□□ 0.56
LINC00339-205ENST00000452322 CCNB3Q8WWL7 1395 aa18.51■□□□□ 0.55
LINC00339-205ENST00000452322 GPATCH8Q9UKJ3 1502 aaKnown RBP18.51■□□□□ 0.55
LINC00339-205ENST00000452322 ITSN2Q9NZM3 1697 aa18.49■□□□□ 0.55
LINC00339-205ENST00000452322 CDC42BPBQ9Y5S2 1711 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms