RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 PHLDB1Q86UU1 1377 aa21.95■■□□□ 1.1
SF1-211ENST00000448404 ARID3CA6NKF2 412 aa21.94■■□□□ 1.1
SF1-211ENST00000448404 RRBP1Q9P2E9 1410 aaKnown RBP21.92■■□□□ 1.1
SF1-211ENST00000448404 LAMC3Q9Y6N6 1575 aa21.91■■□□□ 1.1
SF1-211ENST00000448404 KIF21AQ7Z4S6 1674 aa21.9■■□□□ 1.1
SF1-211ENST00000448404 PDS5BQ9NTI5 1447 aa21.9■■□□□ 1.1
SF1-211ENST00000448404 YTHDC1Q96MU7 727 aaKnown RBP21.9■■□□□ 1.1
SF1-211ENST00000448404 PCF11O94913 1555 aaKnown RBP21.89■■□□□ 1.09
SF1-211ENST00000448404 TIAM1Q13009 1591 aa21.88■■□□□ 1.09
SF1-211ENST00000448404 NEUROD1Q13562 356 aa21.87■■□□□ 1.09
SF1-211ENST00000448404 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
SF1-211ENST00000448404 LRRC9Q6ZRR7 1453 aa21.86■■□□□ 1.09
SF1-211ENST00000448404 AQRO60306 1485 aaKnown RBP eCLIP21.86■■□□□ 1.091e-7■■■■■ 49.1
SF1-211ENST00000448404 MIER1Q8N108 512 aa21.83■■□□□ 1.09
SF1-211ENST00000448404 RAB3GAP2Q9H2M9 1393 aa21.8■■□□□ 1.08
SF1-211ENST00000448404 FHAD1B1AJZ9 1412 aa21.79■■□□□ 1.08
SF1-211ENST00000448404 SIN3AQ96ST3 1273 aa21.74■■□□□ 1.07
SF1-211ENST00000448404 WDR97A6NE52 1622 aa21.74■■□□□ 1.07
SF1-211ENST00000448404 ABCA5Q8WWZ7 1642 aa21.73■■□□□ 1.07
SF1-211ENST00000448404 CUL7Q14999 1698 aa21.72■■□□□ 1.07
SF1-211ENST00000448404 ZNF608Q9ULD9 1512 aaPredicted RBP21.7■■□□□ 1.06
SF1-211ENST00000448404 ACIN1Q9UKV3 1341 aaKnown RBP21.69■■□□□ 1.06
SF1-211ENST00000448404 CASKIN1Q8WXD9 1431 aa21.68■■□□□ 1.06
SF1-211ENST00000448404 CTTNBP2Q8WZ74 1663 aa21.68■■□□□ 1.06
SF1-211ENST00000448404 TARBP1Q13395 1621 aaKnown RBP21.67■■□□□ 1.06
SF1-211ENST00000448404 MTUS2Q5JR59 1369 aa21.67■■□□□ 1.06
SF1-211ENST00000448404 FYCO1Q9BQS8 1478 aa21.64■■□□□ 1.05
SF1-211ENST00000448404 SNAPC4Q5SXM2 1469 aa21.64■■□□□ 1.05
SF1-211ENST00000448404 SETD5Q9C0A6 1442 aa21.63■■□□□ 1.05
SF1-211ENST00000448404 MAP3K1Q13233 1512 aa21.62■■□□□ 1.05
SF1-211ENST00000448404 EFCAB5A4FU69 1503 aa21.62■■□□□ 1.05
SF1-211ENST00000448404 CFAP43Q8NDM7 1665 aa21.61■■□□□ 1.05
SF1-211ENST00000448404 FMN1Q68DA7 1419 aa21.61■■□□□ 1.05
SF1-211ENST00000448404 FBLN2P98095 1184 aa21.61■■□□□ 1.05
SF1-211ENST00000448404 HIRIP3Q9BW71 556 aaPredicted RBP21.6■■□□□ 1.05
SF1-211ENST00000448404 CHIC2Q9UKJ5 165 aa21.59■■□□□ 1.05
SF1-211ENST00000448404 MRC2Q9UBG0 1479 aa21.59■■□□□ 1.05
SF1-211ENST00000448404 MAPKBP1O60336 1514 aa21.58■■□□□ 1.05
SF1-211ENST00000448404 GTF3C3Q9Y5Q9 886 aa21.58■■□□□ 1.05
SF1-211ENST00000448404 PTPRKQ15262 1439 aa21.57■■□□□ 1.04
SF1-211ENST00000448404 CLSPNQ9HAW4 1339 aa21.56■■□□□ 1.04
SF1-211ENST00000448404 LRRIQ1Q96JM4 1722 aa21.56■■□□□ 1.04
SF1-211ENST00000448404 FGD6Q6ZV73 1430 aa21.53■■□□□ 1.04
SF1-211ENST00000448404 RRP7BPQ9NSQ0 103 aa21.52■■□□□ 1.04
SF1-211ENST00000448404 SAMD9Q5K651 1589 aa21.52■■□□□ 1.04
SF1-211ENST00000448404 MAGI3Q5TCQ9 1506 aa21.51■■□□□ 1.03
SF1-211ENST00000448404 CENPBP07199 599 aaPredicted RBP21.51■■□□□ 1.03
SF1-211ENST00000448404 GRIN2BQ13224 1484 aa21.5■■□□□ 1.03
SF1-211ENST00000448404 ERCC6Q03468 1493 aa21.5■■□□□ 1.03
SF1-211ENST00000448404 NCOA2Q15596 1464 aa21.5■■□□□ 1.03
SF1-211ENST00000448404 PBRM1Q86U86 1689 aa21.49■■□□□ 1.03
SF1-211ENST00000448404 CDK13Q14004 1512 aaKnown RBP21.48■■□□□ 1.03
SF1-211ENST00000448404 ADAMTS12P58397 1594 aa21.44■■□□□ 1.02
SF1-211ENST00000448404 IQGAP2Q13576 1575 aa21.42■■□□□ 1.02
SF1-211ENST00000448404 KCNH8Q96L42 1107 aa21.42■■□□□ 1.02
SF1-211ENST00000448404 CHMP7Q8WUX9 453 aaPredicted RBP21.4■■□□□ 1.02
SF1-211ENST00000448404 MYT1Q01538 1121 aa21.4■■□□□ 1.02
SF1-211ENST00000448404 MYOM3Q5VTT5 1437 aa21.39■■□□□ 1.02
SF1-211ENST00000448404 ZNF644Q9H582 1327 aaPredicted RBP21.39■■□□□ 1.01
SF1-211ENST00000448404 IFT140Q96RY7 1462 aa21.38■■□□□ 1.01
SF1-211ENST00000448404 FOXD1Q16676 465 aa21.36■■□□□ 1.01
SF1-211ENST00000448404 CCDC18Q5T9S5 1454 aa21.35■■□□□ 1.01
SF1-211ENST00000448404 EPRSP07814 1512 aaKnown RBP21.35■■□□□ 1.01
SF1-211ENST00000448404 WDR62O43379 1518 aa21.34■■□□□ 1.01
SF1-211ENST00000448404 DDX10Q13206 875 aaKnown RBP21.34■■□□□ 1.01
SF1-211ENST00000448404 TRIM52Q96A61 297 aa21.34■■□□□ 1.01
SF1-211ENST00000448404 THOC2Q8NI27 1593 aaKnown RBP21.33■■□□□ 1
SF1-211ENST00000448404 EIF4G3O43432 1585 aaKnown RBP21.32■■□□□ 1
SF1-211ENST00000448404 NAIPQ13075 1403 aa21.31■■□□□ 1
SF1-211ENST00000448404 DISP1Q96F81 1524 aa21.29■■□□□ 1
SF1-211ENST00000448404 EHBP1L1Q8N3D4 1523 aa21.29■■□□□ 1
SF1-211ENST00000448404 GRIN2AQ12879 1464 aa21.28■■□□□ 1
SF1-211ENST00000448404 SUPT6HQ7KZ85 1726 aaKnown RBP21.28■■□□□ 1
SF1-211ENST00000448404 UGGT2Q9NYU1 1516 aa21.28■■□□□ 1
SF1-211ENST00000448404 HFM1A2PYH4 1435 aa21.27■□□□□ 0.99
SF1-211ENST00000448404 PTPN23Q9H3S7 1636 aa21.27■□□□□ 0.99
SF1-211ENST00000448404 ZNF777Q9ULD5 760 aaPredicted RBP21.26■□□□□ 0.99
SF1-211ENST00000448404 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.26■□□□□ 0.99
SF1-211ENST00000448404 PPP1R15AO75807 674 aaPredicted RBP21.26■□□□□ 0.99
SF1-211ENST00000448404 KIAA0586Q9BVV6 1533 aa21.24■□□□□ 0.99
SF1-211ENST00000448404 PLB1Q6P1J6 1458 aa21.24■□□□□ 0.99
SF1-211ENST00000448404 HECW1Q76N89 1606 aa21.23■□□□□ 0.99
SF1-211ENST00000448404 KDM6BO15054 1643 aa21.23■□□□□ 0.99
SF1-211ENST00000448404 PRG4Q92954 1404 aaPredicted RBP21.22■□□□□ 0.99
SF1-211ENST00000448404 JPH4Q96JJ6 628 aa21.21■□□□□ 0.99
SF1-211ENST00000448404 TONSLQ96HA7 1378 aa21.21■□□□□ 0.99
SF1-211ENST00000448404 NUP153P49790 1475 aaKnown RBP21.21■□□□□ 0.99
SF1-211ENST00000448404 ARHGEF11O15085 1522 aa21.19■□□□□ 0.98
SF1-211ENST00000448404 KIAA0556O60303 1618 aa21.19■□□□□ 0.98
SF1-211ENST00000448404 UACAQ9BZF9 1416 aa21.18■□□□□ 0.98
SF1-211ENST00000448404 CEP170Q5SW79 1584 aa21.18■□□□□ 0.98
SF1-211ENST00000448404 DENND4BO75064 1496 aaPredicted RBP21.12■□□□□ 0.97
SF1-211ENST00000448404 MPHOSPH9Q99550 1183 aa21.11■□□□□ 0.97
SF1-211ENST00000448404 SYNJ2O15056 1496 aa21.11■□□□□ 0.97
SF1-211ENST00000448404 CFDP1Q9UEE9 299 aaPredicted RBP21.09■□□□□ 0.97
SF1-211ENST00000448404 TCOF1Q13428 1488 aaKnown RBP21.07■□□□□ 0.96
SF1-211ENST00000448404 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
SF1-211ENST00000448404 RAPGEF6Q8TEU7 1601 aa21.07■□□□□ 0.96
SF1-211ENST00000448404 CDK11AQ9UQ88 783 aaPredicted RBP21.06■□□□□ 0.96
SF1-211ENST00000448404 ABCC5O15440 1437 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms