RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 RAB3GAP2Q9H2M9 1393 aa13.79□□□□□ -0.2
KLHL3-202ENST00000447439 FHOD3Q2V2M9 1422 aa13.77□□□□□ -0.2
KLHL3-202ENST00000447439 DNAJC5BQ9UF47 199 aa13.77□□□□□ -0.2
KLHL3-202ENST00000447439 TIAM1Q13009 1591 aa13.76□□□□□ -0.21
KLHL3-202ENST00000447439 CLSPNQ9HAW4 1339 aa13.75□□□□□ -0.21
KLHL3-202ENST00000447439 SIN3AQ96ST3 1273 aa13.74□□□□□ -0.21
KLHL3-202ENST00000447439 LRRC9Q6ZRR7 1453 aa13.74□□□□□ -0.21
KLHL3-202ENST00000447439 PELP1Q8IZL8 1130 aaKnown RBP13.73□□□□□ -0.21
KLHL3-202ENST00000447439 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
KLHL3-202ENST00000447439 PCF11O94913 1555 aaKnown RBP13.72□□□□□ -0.21
KLHL3-202ENST00000447439 TOPBP1Q92547 1522 aa13.71□□□□□ -0.21
KLHL3-202ENST00000447439 TDRD9Q8NDG6 1382 aaKnown RBP13.7□□□□□ -0.22
KLHL3-202ENST00000447439 MAPKBP1O60336 1514 aa13.68□□□□□ -0.22
KLHL3-202ENST00000447439 MAP3K1Q13233 1512 aa13.68□□□□□ -0.22
KLHL3-202ENST00000447439 HIRIP3Q9BW71 556 aaPredicted RBP13.68□□□□□ -0.22
KLHL3-202ENST00000447439 KCNH8Q96L42 1107 aa13.67□□□□□ -0.22
KLHL3-202ENST00000447439 SETD5Q9C0A6 1442 aa13.67□□□□□ -0.22
KLHL3-202ENST00000447439 DNMBPQ6XZF7 1577 aa13.67□□□□□ -0.22
KLHL3-202ENST00000447439 FHAD1B1AJZ9 1412 aa13.66□□□□□ -0.22
KLHL3-202ENST00000447439 ABCA10Q8WWZ4 1543 aa13.66□□□□□ -0.22
KLHL3-202ENST00000447439 URB2Q14146 1524 aaKnown RBP13.63□□□□□ -0.23
KLHL3-202ENST00000447439 CFAP43Q8NDM7 1665 aa13.63□□□□□ -0.23
KLHL3-202ENST00000447439 ARID3CA6NKF2 412 aa13.6□□□□□ -0.23
KLHL3-202ENST00000447439 DDX10Q13206 875 aaKnown RBP13.59□□□□□ -0.23
KLHL3-202ENST00000447439 WDR97A6NE52 1622 aa13.59□□□□□ -0.23
KLHL3-202ENST00000447439 CASKIN1Q8WXD9 1431 aa13.58□□□□□ -0.24
KLHL3-202ENST00000447439 CUL7Q14999 1698 aa13.58□□□□□ -0.24
KLHL3-202ENST00000447439 FYCO1Q9BQS8 1478 aa13.57□□□□□ -0.24
KLHL3-202ENST00000447439 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
KLHL3-202ENST00000447439 MTUS2Q5JR59 1369 aa13.56□□□□□ -0.24
KLHL3-202ENST00000447439 CTTNBP2Q8WZ74 1663 aa13.56□□□□□ -0.24
KLHL3-202ENST00000447439 EFCAB5A4FU69 1503 aa13.55□□□□□ -0.24
KLHL3-202ENST00000447439 PTPRKQ15262 1439 aa13.54□□□□□ -0.24
KLHL3-202ENST00000447439 GAPVD1Q14C86 1478 aa13.53□□□□□ -0.24
KLHL3-202ENST00000447439 SNAPC4Q5SXM2 1469 aa13.53□□□□□ -0.24
KLHL3-202ENST00000447439 FGD6Q6ZV73 1430 aa13.52□□□□□ -0.24
KLHL3-202ENST00000447439 FMN1Q68DA7 1419 aa13.51□□□□□ -0.25
KLHL3-202ENST00000447439 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
KLHL3-202ENST00000447439 SUPT16HQ9Y5B9 1047 aaKnown RBP13.49□□□□□ -0.25
KLHL3-202ENST00000447439 AQRO60306 1485 aaKnown RBP eCLIP13.49□□□□□ -0.25
KLHL3-202ENST00000447439 RRP7BPQ9NSQ0 103 aa13.49□□□□□ -0.25
KLHL3-202ENST00000447439 PPP1R15AO75807 674 aaPredicted RBP13.47□□□□□ -0.25
KLHL3-202ENST00000447439 ABCA5Q8WWZ7 1642 aa13.47□□□□□ -0.25
KLHL3-202ENST00000447439 NCOA2Q15596 1464 aa13.47□□□□□ -0.25
KLHL3-202ENST00000447439 LRRIQ1Q96JM4 1722 aa13.47□□□□□ -0.25
KLHL3-202ENST00000447439 PDS5BQ9NTI5 1447 aa13.47□□□□□ -0.25
KLHL3-202ENST00000447439 CCDC18Q5T9S5 1454 aa13.46□□□□□ -0.25
KLHL3-202ENST00000447439 KIF21AQ7Z4S6 1674 aa13.46□□□□□ -0.26
KLHL3-202ENST00000447439 TONSLQ96HA7 1378 aa13.44□□□□□ -0.26
KLHL3-202ENST00000447439 GRIN2BQ13224 1484 aa13.44□□□□□ -0.26
KLHL3-202ENST00000447439 MAGI3Q5TCQ9 1506 aa13.44□□□□□ -0.26
KLHL3-202ENST00000447439 SAMD9Q5K651 1589 aa13.44□□□□□ -0.26
KLHL3-202ENST00000447439 BCANQ96GW7 911 aa13.43□□□□□ -0.26
KLHL3-202ENST00000447439 MYOM3Q5VTT5 1437 aa13.42□□□□□ -0.26
KLHL3-202ENST00000447439 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.41□□□□□ -0.26
KLHL3-202ENST00000447439 NAIPQ13075 1403 aa13.41□□□□□ -0.26
KLHL3-202ENST00000447439 TRIM52Q96A61 297 aa13.41□□□□□ -0.26
KLHL3-202ENST00000447439 HFM1A2PYH4 1435 aa13.4□□□□□ -0.26
KLHL3-202ENST00000447439 FOXD1Q16676 465 aa13.4□□□□□ -0.26
KLHL3-202ENST00000447439 PTPN23Q9H3S7 1636 aa13.4□□□□□ -0.26
KLHL3-202ENST00000447439 CDK13Q14004 1512 aaKnown RBP13.39□□□□□ -0.27
KLHL3-202ENST00000447439 THOC2Q8NI27 1593 aaKnown RBP13.38□□□□□ -0.27
KLHL3-202ENST00000447439 TARBP1Q13395 1621 aaKnown RBP13.38□□□□□ -0.27
KLHL3-202ENST00000447439 UACAQ9BZF9 1416 aa13.38□□□□□ -0.27
KLHL3-202ENST00000447439 TIMELESSQ9UNS1 1208 aa13.36□□□□□ -0.27
KLHL3-202ENST00000447439 SUPT6HQ7KZ85 1726 aaKnown RBP13.35□□□□□ -0.27
KLHL3-202ENST00000447439 EHBP1L1Q8N3D4 1523 aa13.35□□□□□ -0.27
KLHL3-202ENST00000447439 ZNF608Q9ULD9 1512 aaPredicted RBP13.35□□□□□ -0.27
KLHL3-202ENST00000447439 UGGT2Q9NYU1 1516 aa13.34□□□□□ -0.27
KLHL3-202ENST00000447439 ANP32CO43423 234 aa13.34□□□□□ -0.27
KLHL3-202ENST00000447439 KDM6BO15054 1643 aa13.33□□□□□ -0.28
KLHL3-202ENST00000447439 ZNF644Q9H582 1327 aaPredicted RBP13.33□□□□□ -0.28
KLHL3-202ENST00000447439 FKBP8Q14318 412 aa13.32□□□□□ -0.28
KLHL3-202ENST00000447439 EPRSP07814 1512 aaKnown RBP13.32□□□□□ -0.28
KLHL3-202ENST00000447439 PBRM1Q86U86 1689 aa13.3□□□□□ -0.28
KLHL3-202ENST00000447439 IQGAP2Q13576 1575 aa13.3□□□□□ -0.28
KLHL3-202ENST00000447439 DENND4BO75064 1496 aaPredicted RBP13.3□□□□□ -0.28
KLHL3-202ENST00000447439 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
KLHL3-202ENST00000447439 ARHGEF11O15085 1522 aa13.29□□□□□ -0.28
KLHL3-202ENST00000447439 ADAMTS12P58397 1594 aa13.28□□□□□ -0.28
KLHL3-202ENST00000447439 HSPA5P11021 654 aaKnown RBP13.28□□□□□ -0.28
KLHL3-202ENST00000447439 MPHOSPH9Q99550 1183 aa13.28□□□□□ -0.28
KLHL3-202ENST00000447439 KDM5BQ9UGL1 1544 aa13.28□□□□□ -0.28
KLHL3-202ENST00000447439 FBLN2P98095 1184 aa13.27□□□□□ -0.28
KLHL3-202ENST00000447439 HECW1Q76N89 1606 aa13.27□□□□□ -0.28
KLHL3-202ENST00000447439 ERCC6Q03468 1493 aa13.27□□□□□ -0.29
KLHL3-202ENST00000447439 TSHZ2Q9NRE2 1034 aa13.26□□□□□ -0.29
KLHL3-202ENST00000447439 L3MBTL2Q969R5 705 aa13.25□□□□□ -0.29
KLHL3-202ENST00000447439 WDR62O43379 1518 aa13.25□□□□□ -0.29
KLHL3-202ENST00000447439 WASHC2AQ641Q2 1341 aa13.25□□□□□ -0.29
KLHL3-202ENST00000447439 TCOF1Q13428 1488 aaKnown RBP13.24□□□□□ -0.29
KLHL3-202ENST00000447439 CCER2I3L3R5 266 aa13.24□□□□□ -0.29
KLHL3-202ENST00000447439 ZNF777Q9ULD5 760 aaPredicted RBP13.24□□□□□ -0.29
KLHL3-202ENST00000447439 CNGB1Q14028 1251 aaPredicted RBP13.23□□□□□ -0.29
KLHL3-202ENST00000447439 C11orf95C9JLR9 678 aaPredicted RBP13.22□□□□□ -0.29
KLHL3-202ENST00000447439 GCC2Q8IWJ2 1684 aa13.22□□□□□ -0.29
KLHL3-202ENST00000447439 CCDC184Q52MB2 194 aa13.21□□□□□ -0.3
KLHL3-202ENST00000447439 DISP1Q96F81 1524 aa13.21□□□□□ -0.3
KLHL3-202ENST00000447439 PRG4Q92954 1404 aaPredicted RBP13.2□□□□□ -0.3
KLHL3-202ENST00000447439 IRX6P78412 446 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms