RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 MAGI1Q96QZ7 1491 aaPredicted RBP19.7■□□□□ 0.74
COL28A1-204ENST00000444268 PPARGC1BQ86YN6 1023 aaKnown RBP19.68■□□□□ 0.74
COL28A1-204ENST00000444268 FBLN2P98095 1184 aa19.65■□□□□ 0.74
COL28A1-204ENST00000444268 SYNJ2O15056 1496 aa19.65■□□□□ 0.74
COL28A1-204ENST00000444268 RANGAP1P46060 587 aaPredicted RBP19.64■□□□□ 0.73
COL28A1-204ENST00000444268 GRIN2AQ12879 1464 aa19.63■□□□□ 0.73
COL28A1-204ENST00000444268 CHMP7Q8WUX9 453 aaPredicted RBP19.62■□□□□ 0.73
COL28A1-204ENST00000444268 CHD1O14646 1710 aa19.58■□□□□ 0.73
COL28A1-204ENST00000444268 CTTNBP2Q8WZ74 1663 aa19.57■□□□□ 0.72
COL28A1-204ENST00000444268 APLP2Q06481 763 aa19.56■□□□□ 0.72
COL28A1-204ENST00000444268 CEP170Q5SW79 1584 aa19.54■□□□□ 0.72
COL28A1-204ENST00000444268 ARAP1Q96P48 1450 aa19.5■□□□□ 0.71
COL28A1-204ENST00000444268 NUP160Q12769 1436 aa19.49■□□□□ 0.71
COL28A1-204ENST00000444268 IQGAP2Q13576 1575 aa19.46■□□□□ 0.71
COL28A1-204ENST00000444268 KIAA0586Q9BVV6 1533 aa19.45■□□□□ 0.7
COL28A1-204ENST00000444268 ARHGAP35Q9NRY4 1499 aa19.45■□□□□ 0.7
COL28A1-204ENST00000444268 CCER1Q8TC90 406 aaPredicted RBP19.44■□□□□ 0.7
COL28A1-204ENST00000444268 TTBK1Q5TCY1 1321 aaPredicted RBP19.44■□□□□ 0.7
COL28A1-204ENST00000444268 P3H3Q8IVL6 736 aa19.42■□□□□ 0.7
COL28A1-204ENST00000444268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.37■□□□□ 0.69
COL28A1-204ENST00000444268 SAMD9Q5K651 1589 aa19.36■□□□□ 0.69
COL28A1-204ENST00000444268 UGGT2Q9NYU1 1516 aa19.36■□□□□ 0.69
COL28A1-204ENST00000444268 FHOD3Q2V2M9 1422 aa19.35■□□□□ 0.69
COL28A1-204ENST00000444268 EFCAB5A4FU69 1503 aa19.33■□□□□ 0.69
COL28A1-204ENST00000444268 JPH4Q96JJ6 628 aa19.33■□□□□ 0.68
COL28A1-204ENST00000444268 CLASP1Q7Z460 1538 aa19.33■□□□□ 0.68
COL28A1-204ENST00000444268 MAP3K1Q13233 1512 aa19.32■□□□□ 0.68
COL28A1-204ENST00000444268 DISP1Q96F81 1524 aa19.31■□□□□ 0.68
COL28A1-204ENST00000444268 KIAA0556O60303 1618 aa19.29■□□□□ 0.68
COL28A1-204ENST00000444268 SHROOM2Q13796 1616 aa19.26■□□□□ 0.67
COL28A1-204ENST00000444268 OSCARQ8IYS5 282 aa19.26■□□□□ 0.67
COL28A1-204ENST00000444268 PRG4Q92954 1404 aaPredicted RBP19.25■□□□□ 0.67
COL28A1-204ENST00000444268 ERCC6L2Q5T890 1561 aa19.24■□□□□ 0.67
COL28A1-204ENST00000444268 TIAM1Q13009 1591 aa19.22■□□□□ 0.67
COL28A1-204ENST00000444268 RRBP1Q9P2E9 1410 aaKnown RBP19.2■□□□□ 0.66
COL28A1-204ENST00000444268 CARMIL2Q6F5E8 1435 aa19.19■□□□□ 0.66
COL28A1-204ENST00000444268 PCF11O94913 1555 aaKnown RBP19.19■□□□□ 0.66
COL28A1-204ENST00000444268 CFAP43Q8NDM7 1665 aa19.18■□□□□ 0.66
COL28A1-204ENST00000444268 HNRNPUL2Q1KMD3 747 aaKnown RBP19.17■□□□□ 0.66
COL28A1-204ENST00000444268 FMN1Q68DA7 1419 aa19.16■□□□□ 0.66
COL28A1-204ENST00000444268 KANK4Q5T7N3 995 aaPredicted RBP19.15■□□□□ 0.66
COL28A1-204ENST00000444268 FYCO1Q9BQS8 1478 aa19.14■□□□□ 0.65
COL28A1-204ENST00000444268 ATP1B4Q9UN42 357 aaPredicted RBP19.14■□□□□ 0.65
COL28A1-204ENST00000444268 CASKIN1Q8WXD9 1431 aa19.11■□□□□ 0.65
COL28A1-204ENST00000444268 LRRC9Q6ZRR7 1453 aa19.1■□□□□ 0.65
COL28A1-204ENST00000444268 CCNB3Q8WWL7 1395 aa19.1■□□□□ 0.65
COL28A1-204ENST00000444268 PLB1Q6P1J6 1458 aa19.09■□□□□ 0.65
COL28A1-204ENST00000444268 CLSPNQ9HAW4 1339 aa19.08■□□□□ 0.65
COL28A1-204ENST00000444268 LRRIQ1Q96JM4 1722 aa19.08■□□□□ 0.65
COL28A1-204ENST00000444268 PTPRGP23470 1445 aa19.08■□□□□ 0.64
COL28A1-204ENST00000444268 ARID3CA6NKF2 412 aa19.06■□□□□ 0.64
COL28A1-204ENST00000444268 RAPGEF6Q8TEU7 1601 aa19.05■□□□□ 0.64
COL28A1-204ENST00000444268 HECW1Q76N89 1606 aa19.02■□□□□ 0.64
COL28A1-204ENST00000444268 ABCA8O94911 1581 aa19.02■□□□□ 0.64
COL28A1-204ENST00000444268 NUP153P49790 1475 aaKnown RBP19.01■□□□□ 0.63
COL28A1-204ENST00000444268 CDK13Q14004 1512 aaKnown RBP19■□□□□ 0.63
COL28A1-204ENST00000444268 ARHGEF11O15085 1522 aa18.99■□□□□ 0.63
COL28A1-204ENST00000444268 EPRSP07814 1512 aaKnown RBP18.98■□□□□ 0.63
COL28A1-204ENST00000444268 UACAQ9BZF9 1416 aa18.96■□□□□ 0.63
COL28A1-204ENST00000444268 RIMBP3CA6NJZ7 1639 aa18.93■□□□□ 0.62
COL28A1-204ENST00000444268 RIMBP3BA6NNM3 1639 aa18.93■□□□□ 0.62
COL28A1-204ENST00000444268 RIMBP3Q9UFD9 1639 aa18.93■□□□□ 0.62
COL28A1-204ENST00000444268 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.93■□□□□ 0.62
COL28A1-204ENST00000444268 CCDC18Q5T9S5 1454 aa18.93■□□□□ 0.62
COL28A1-204ENST00000444268 MAGI3Q5TCQ9 1506 aa18.92■□□□□ 0.62
COL28A1-204ENST00000444268 DHX57Q6P158 1386 aaKnown RBP18.92■□□□□ 0.62
COL28A1-204ENST00000444268 ABCC2Q92887 1545 aa18.91■□□□□ 0.62
COL28A1-204ENST00000444268 PHLDB1Q86UU1 1377 aa18.9■□□□□ 0.62
COL28A1-204ENST00000444268 ATP10BO94823 1461 aa18.89■□□□□ 0.62
COL28A1-204ENST00000444268 ADCY10Q96PN6 1610 aa18.89■□□□□ 0.61
COL28A1-204ENST00000444268 ZNF316A6NFI3 1004 aaPredicted RBP18.88■□□□□ 0.61
COL28A1-204ENST00000444268 UHRF1BP1LA0JNW5 1464 aa18.86■□□□□ 0.61
COL28A1-204ENST00000444268 MTUS2Q5JR59 1369 aa18.86■□□□□ 0.61
COL28A1-204ENST00000444268 EHBP1L1Q8N3D4 1523 aa18.85■□□□□ 0.61
COL28A1-204ENST00000444268 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
COL28A1-204ENST00000444268 SUPT6HQ7KZ85 1726 aaKnown RBP18.83■□□□□ 0.61
COL28A1-204ENST00000444268 CYB5RLQ6IPT4 315 aa18.83■□□□□ 0.6
COL28A1-204ENST00000444268 ZCCHC11Q5TAX3 1644 aaKnown RBP18.82■□□□□ 0.6
COL28A1-204ENST00000444268 SETD5Q9C0A6 1442 aa18.81■□□□□ 0.6
COL28A1-204ENST00000444268 KDM5BQ9UGL1 1544 aa18.8■□□□□ 0.6
COL28A1-204ENST00000444268 FGD6Q6ZV73 1430 aa18.79■□□□□ 0.6
COL28A1-204ENST00000444268 RAB3GAP2Q9H2M9 1393 aa18.79■□□□□ 0.6
COL28A1-204ENST00000444268 ITGAEP38570 1179 aa18.77■□□□□ 0.6
COL28A1-204ENST00000444268 FAM50AQ14320 339 aaKnown RBP18.77■□□□□ 0.6
COL28A1-204ENST00000444268 NCOA2Q15596 1464 aa18.76■□□□□ 0.59
COL28A1-204ENST00000444268 CDK11AQ9UQ88 783 aaPredicted RBP18.76■□□□□ 0.59
COL28A1-204ENST00000444268 TROQ12816 1431 aaPredicted RBP18.76■□□□□ 0.59
COL28A1-204ENST00000444268 KIF14Q15058 1648 aa18.75■□□□□ 0.59
COL28A1-204ENST00000444268 PLEKHD1A6NEE1 506 aa18.75■□□□□ 0.59
COL28A1-204ENST00000444268 MYOM3Q5VTT5 1437 aa18.73■□□□□ 0.59
COL28A1-204ENST00000444268 MAPKBP1O60336 1514 aa18.68■□□□□ 0.58
COL28A1-204ENST00000444268 KCNH8Q96L42 1107 aa18.68■□□□□ 0.58
COL28A1-204ENST00000444268 ASXL2Q76L83 1435 aa18.66■□□□□ 0.58
COL28A1-204ENST00000444268 NPM1P06748 294 aaKnown RBP eCLIP18.66■□□□□ 0.58
COL28A1-204ENST00000444268 PTPN23Q9H3S7 1636 aa18.66■□□□□ 0.58
COL28A1-204ENST00000444268 ABCC10Q5T3U5 1492 aa18.65■□□□□ 0.58
COL28A1-204ENST00000444268 WDR7Q9Y4E6 1490 aa18.64■□□□□ 0.57
COL28A1-204ENST00000444268 HFM1A2PYH4 1435 aa18.63■□□□□ 0.57
COL28A1-204ENST00000444268 TCOF1Q13428 1488 aaKnown RBP18.63■□□□□ 0.57
COL28A1-204ENST00000444268 TTC37Q6PGP7 1564 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms