RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 TSPY10P0CW01 314 aa11.39□□□□□ -0.59
TMEM39A-202ENST00000438581 RTN4Q9NQC3 1192 aaKnown RBP11.37□□□□□ -0.59
TMEM39A-202ENST00000438581 EIF4G1Q04637 1599 aaKnown RBP11.36□□□□□ -0.59
TMEM39A-202ENST00000438581 TONSLQ96HA7 1378 aa11.35□□□□□ -0.59
TMEM39A-202ENST00000438581 CHGAP10645 457 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-202ENST00000438581 NCAPD3P42695 1498 aa11.33□□□□□ -0.6
TMEM39A-202ENST00000438581 FANCD2Q9BXW9 1451 aa11.33□□□□□ -0.6
TMEM39A-202ENST00000438581 KANK4Q5T7N3 995 aaPredicted RBP11.33□□□□□ -0.6
TMEM39A-202ENST00000438581 PLPPR3Q6T4P5 718 aa11.32□□□□□ -0.6
TMEM39A-202ENST00000438581 CFDP1Q9UEE9 299 aaPredicted RBP11.32□□□□□ -0.6
TMEM39A-202ENST00000438581 ANP32CO43423 234 aa11.32□□□□□ -0.6
TMEM39A-202ENST00000438581 RAPGEF2Q9Y4G8 1499 aa11.31□□□□□ -0.6
TMEM39A-202ENST00000438581 BCANQ96GW7 911 aa11.3□□□□□ -0.6
TMEM39A-202ENST00000438581 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
TMEM39A-202ENST00000438581 VPS8Q8N3P4 1428 aa11.29□□□□□ -0.6
TMEM39A-202ENST00000438581 KDM2AQ9Y2K7 1162 aa11.28□□□□□ -0.6
TMEM39A-202ENST00000438581 FHAD1B1AJZ9 1412 aa11.27□□□□□ -0.6
TMEM39A-202ENST00000438581 DDX10Q13206 875 aaKnown RBP11.27□□□□□ -0.6
TMEM39A-202ENST00000438581 ESF1Q9H501 851 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-202ENST00000438581 BICRAQ9NZM4 1560 aa11.25□□□□□ -0.61
TMEM39A-202ENST00000438581 DNAJC5BQ9UF47 199 aa11.25□□□□□ -0.61
TMEM39A-202ENST00000438581 AEBP2Q6ZN18 517 aaPredicted RBP11.25□□□□□ -0.61
TMEM39A-202ENST00000438581 CCNB3Q8WWL7 1395 aa11.23□□□□□ -0.61
TMEM39A-202ENST00000438581 SENP3Q9H4L4 574 aaPredicted RBP11.23□□□□□ -0.61
TMEM39A-202ENST00000438581 STAG3Q9UJ98 1225 aa11.23□□□□□ -0.61
TMEM39A-202ENST00000438581 RAD54L2Q9Y4B4 1467 aa11.23□□□□□ -0.61
TMEM39A-202ENST00000438581 SIN3AQ96ST3 1273 aa11.22□□□□□ -0.61
TMEM39A-202ENST00000438581 NESP48681 1621 aa11.22□□□□□ -0.61
TMEM39A-202ENST00000438581 FGD5Q6ZNL6 1462 aa11.22□□□□□ -0.61
TMEM39A-202ENST00000438581 FHOD3Q2V2M9 1422 aa11.21□□□□□ -0.61
TMEM39A-202ENST00000438581 UBE2Q2Q8WVN8 375 aa11.21□□□□□ -0.62
TMEM39A-202ENST00000438581 RGL3Q3MIN7 710 aa11.2□□□□□ -0.62
TMEM39A-202ENST00000438581 IGF1RP08069 1367 aa11.19□□□□□ -0.62
TMEM39A-202ENST00000438581 CC2D2AQ9P2K1 1620 aa11.19□□□□□ -0.62
TMEM39A-202ENST00000438581 PODXL2Q9NZ53 605 aa11.19□□□□□ -0.62
TMEM39A-202ENST00000438581 JPH4Q96JJ6 628 aa11.19□□□□□ -0.62
TMEM39A-202ENST00000438581 GTF3C3Q9Y5Q9 886 aa11.16□□□□□ -0.62
TMEM39A-202ENST00000438581 FBXO3Q9UK99 471 aa11.16□□□□□ -0.62
TMEM39A-202ENST00000438581 CARMIL2Q6F5E8 1435 aa11.16□□□□□ -0.62
TMEM39A-202ENST00000438581 CFTRP13569 1480 aa11.16□□□□□ -0.62
TMEM39A-202ENST00000438581 FMN1Q68DA7 1419 aa11.15□□□□□ -0.62
TMEM39A-202ENST00000438581 AQRO60306 1485 aaKnown RBP eCLIP11.13□□□□□ -0.631e-6■■■■□ 21.2
TMEM39A-202ENST00000438581 GAPVD1Q14C86 1478 aa11.12□□□□□ -0.63
TMEM39A-202ENST00000438581 SYNJ1O43426 1573 aa11.12□□□□□ -0.63
TMEM39A-202ENST00000438581 MIER1Q8N108 512 aa11.12□□□□□ -0.63
TMEM39A-202ENST00000438581 ARHGAP35Q9NRY4 1499 aa11.11□□□□□ -0.63
TMEM39A-202ENST00000438581 EIF4G2P78344 907 aaKnown RBP eCLIP11.1□□□□□ -0.63
TMEM39A-202ENST00000438581 FAM9BQ8IZU0 186 aa11.09□□□□□ -0.63
TMEM39A-202ENST00000438581 HMGXB3Q12766 1538 aa11.09□□□□□ -0.63
TMEM39A-202ENST00000438581 TULP1O00294 542 aaPredicted RBP11.09□□□□□ -0.63
TMEM39A-202ENST00000438581 FOXD1Q16676 465 aa11.09□□□□□ -0.63
TMEM39A-202ENST00000438581 UNC13AQ9UPW8 1703 aa11.09□□□□□ -0.63
TMEM39A-202ENST00000438581 GLIPR1L2Q4G1C9 344 aa11.08□□□□□ -0.64
TMEM39A-202ENST00000438581 ACIN1Q9UKV3 1341 aaKnown RBP11.07□□□□□ -0.64
TMEM39A-202ENST00000438581 ERICH6BQ5W0A0 696 aa11.07□□□□□ -0.64
TMEM39A-202ENST00000438581 SALL2Q9Y467 1007 aaPredicted RBP11.07□□□□□ -0.64
TMEM39A-202ENST00000438581 ARID4BQ4LE39 1312 aaPredicted RBP11.07□□□□□ -0.64
TMEM39A-202ENST00000438581 ANP32EQ9BTT0 268 aa11.07□□□□□ -0.64
TMEM39A-202ENST00000438581 TIMELESSQ9UNS1 1208 aa11.06□□□□□ -0.64
TMEM39A-202ENST00000438581 HMGB1P09429 215 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-202ENST00000438581 HNRNPUQ00839 825 aaKnown RBP eCLIP11.06□□□□□ -0.64
TMEM39A-202ENST00000438581 SETD5Q9C0A6 1442 aa11.05□□□□□ -0.64
TMEM39A-202ENST00000438581 NPM2Q86SE8 214 aaKnown RBP11.05□□□□□ -0.64
TMEM39A-202ENST00000438581 CUX1P39880 1505 aa11.04□□□□□ -0.64
TMEM39A-202ENST00000438581 RAB3GAP2Q9H2M9 1393 aa11.04□□□□□ -0.64
TMEM39A-202ENST00000438581 HNRNPMP52272 730 aaKnown RBP eCLIP11.04□□□□□ -0.648e-7■■■□□ 16.7
TMEM39A-202ENST00000438581 TRHP20396 242 aaPredicted RBP11.02□□□□□ -0.65
TMEM39A-202ENST00000438581 MLECQ14165 292 aa11.02□□□□□ -0.65
TMEM39A-202ENST00000438581 TOPBP1Q92547 1522 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 EFCAB2Q5VUJ9 269 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 TMC1Q8TDI8 760 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 CARD11Q9BXL7 1154 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 MRS2Q9HD23 443 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 PKD2Q13563 968 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 GGT6Q6P531 493 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 CLSPNQ9HAW4 1339 aa11.01□□□□□ -0.65
TMEM39A-202ENST00000438581 PTPRGP23470 1445 aa11□□□□□ -0.65
TMEM39A-202ENST00000438581 POLA1P09884 1462 aaPredicted RBP11□□□□□ -0.65
TMEM39A-202ENST00000438581 PPP1R15AO75807 674 aaPredicted RBP11□□□□□ -0.65
TMEM39A-202ENST00000438581 SENP3-EIF4A1A0A087X0R7 540 aa11□□□□□ -0.65
TMEM39A-202ENST00000438581 DCAF11Q8TEB1 546 aa11□□□□□ -0.65
TMEM39A-202ENST00000438581 CYB5RLQ6IPT4 315 aa10.98□□□□□ -0.65
TMEM39A-202ENST00000438581 MPHOSPH9Q99550 1183 aa10.98□□□□□ -0.65
TMEM39A-202ENST00000438581 TOP2BQ02880 1626 aa10.98□□□□□ -0.65
TMEM39A-202ENST00000438581 NEFMP07197 916 aa10.97□□□□□ -0.65
TMEM39A-202ENST00000438581 PKNOX2Q96KN3 472 aa10.97□□□□□ -0.65
TMEM39A-202ENST00000438581 SCAF1Q9H7N4 1312 aaKnown RBP10.97□□□□□ -0.65
TMEM39A-202ENST00000438581 OSCARQ8IYS5 282 aa10.97□□□□□ -0.65
TMEM39A-202ENST00000438581 TAOK2Q9UL54 1235 aa10.97□□□□□ -0.65
TMEM39A-202ENST00000438581 KIF21BO75037 1637 aa10.96□□□□□ -0.65
TMEM39A-202ENST00000438581 NUP155O75694 1391 aa10.96□□□□□ -0.66
TMEM39A-202ENST00000438581 CCDC18Q5T9S5 1454 aa10.95□□□□□ -0.66
TMEM39A-202ENST00000438581 MRC2Q9UBG0 1479 aa10.95□□□□□ -0.66
TMEM39A-202ENST00000438581 GRIN2BQ13224 1484 aa10.95□□□□□ -0.66
TMEM39A-202ENST00000438581 ARAP1Q96P48 1450 aa10.95□□□□□ -0.66
TMEM39A-202ENST00000438581 PRXQ9BXM0 1461 aa10.94□□□□□ -0.66
TMEM39A-202ENST00000438581 CANXP27824 592 aaKnown RBP10.94□□□□□ -0.66
TMEM39A-202ENST00000438581 PDIA4P13667 645 aaKnown RBP10.93□□□□□ -0.66
TMEM39A-202ENST00000438581 PLEKHG5O94827 1062 aa10.93□□□□□ -0.66
TMEM39A-202ENST00000438581 ZNF644Q9H582 1327 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms