RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, human

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL12A1-205	ENST00000425443	RAD54L2	Q9Y4B4	1467 aa		19	■□□□□ 0.63
COL12A1-205	ENST00000425443	DNMBP	Q6XZF7	1577 aa		18.96	■□□□□ 0.63
COL12A1-205	ENST00000425443	TOPBP1	Q92547	1522 aa		18.96	■□□□□ 0.63
COL12A1-205	ENST00000425443	CCNB3	Q8WWL7	1395 aa		18.95	■□□□□ 0.62
COL12A1-205	ENST00000425443	POLA1	P09884	1462 aa	Predicted RBP	18.94	■□□□□ 0.62
COL12A1-205	ENST00000425443	RRBP1	Q9P2E9	1410 aa	Known RBP	18.91	■□□□□ 0.62
COL12A1-205	ENST00000425443	FHAD1	B1AJZ9	1412 aa		18.89	■□□□□ 0.61
COL12A1-205	ENST00000425443	ABCA10	Q8WWZ4	1543 aa		18.89	■□□□□ 0.61
COL12A1-205	ENST00000425443	FAM50A	Q14320	339 aa	Known RBP	18.88	■□□□□ 0.61
COL12A1-205	ENST00000425443	CLSPN	Q9HAW4	1339 aa		18.87	■□□□□ 0.61
COL12A1-205	ENST00000425443	TDRD9	Q8NDG6	1382 aa	Known RBP	18.84	■□□□□ 0.61
COL12A1-205	ENST00000425443	TIAM1	Q13009	1591 aa		18.84	■□□□□ 0.61
COL12A1-205	ENST00000425443	FHOD3	Q2V2M9	1422 aa		18.84	■□□□□ 0.61
COL12A1-205	ENST00000425443	LAMC3	Q9Y6N6	1575 aa		18.84	■□□□□ 0.61
COL12A1-205	ENST00000425443	DNAJC5B	Q9UF47	199 aa		18.83	■□□□□ 0.61
COL12A1-205	ENST00000425443	PDS5B	Q9NTI5	1447 aa		18.83	■□□□□ 0.61
COL12A1-205	ENST00000425443	URB2	Q14146	1524 aa	Known RBP	18.8	■□□□□ 0.6
COL12A1-205	ENST00000425443	LRRC9	Q6ZRR7	1453 aa		18.8	■□□□□ 0.6
COL12A1-205	ENST00000425443	MAP3K1	Q13233	1512 aa		18.78	■□□□□ 0.6
COL12A1-205	ENST00000425443	CUL7	Q14999	1698 aa		18.77	■□□□□ 0.59
COL12A1-205	ENST00000425443	PCF11	O94913	1555 aa	Known RBP	18.75	■□□□□ 0.59
COL12A1-205	ENST00000425443	PHLDB1	Q86UU1	1377 aa		18.75	■□□□□ 0.59
COL12A1-205	ENST00000425443	RAB3GAP2	Q9H2M9	1393 aa		18.74	■□□□□ 0.59
COL12A1-205	ENST00000425443	GAPVD1	Q14C86	1478 aa		18.73	■□□□□ 0.59
COL12A1-205	ENST00000425443	MAPKBP1	O60336	1514 aa		18.73	■□□□□ 0.59
COL12A1-205	ENST00000425443	EFCAB5	A4FU69	1503 aa		18.72	■□□□□ 0.59
COL12A1-205	ENST00000425443	KCNH8	Q96L42	1107 aa		18.71	■□□□□ 0.59
COL12A1-205	ENST00000425443	FMN1	Q68DA7	1419 aa		18.7	■□□□□ 0.58
COL12A1-205	ENST00000425443	FYCO1	Q9BQS8	1478 aa		18.69	■□□□□ 0.58
COL12A1-205	ENST00000425443	CTTNBP2	Q8WZ74	1663 aa		18.68	■□□□□ 0.58
COL12A1-205	ENST00000425443	CASKIN1	Q8WXD9	1431 aa		18.68	■□□□□ 0.58
COL12A1-205	ENST00000425443	SETD5	Q9C0A6	1442 aa		18.68	■□□□□ 0.58
COL12A1-205	ENST00000425443	MTUS2	Q5JR59	1369 aa		18.67	■□□□□ 0.58
COL12A1-205	ENST00000425443	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.65	■□□□□ 0.58
COL12A1-205	ENST00000425443	CFAP43	Q8NDM7	1665 aa		18.65	■□□□□ 0.58
COL12A1-205	ENST00000425443	KIF21A	Q7Z4S6	1674 aa		18.64	■□□□□ 0.57
COL12A1-205	ENST00000425443	SIN3A	Q96ST3	1273 aa		18.63	■□□□□ 0.57
COL12A1-205	ENST00000425443	WDR97	A6NE52	1622 aa		18.62	■□□□□ 0.57
COL12A1-205	ENST00000425443	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.62	■□□□□ 0.57
COL12A1-205	ENST00000425443	ABCA5	Q8WWZ7	1642 aa		18.62	■□□□□ 0.57
COL12A1-205	ENST00000425443	AQR	O60306	1485 aa	Known RBP eCLIP	18.61	■□□□□ 0.57
COL12A1-205	ENST00000425443	ARID3C	A6NKF2	412 aa		18.53	■□□□□ 0.56
COL12A1-205	ENST00000425443	FGD6	Q6ZV73	1430 aa		18.52	■□□□□ 0.56
COL12A1-205	ENST00000425443	SNAPC4	Q5SXM2	1469 aa		18.52	■□□□□ 0.56
COL12A1-205	ENST00000425443	DDX10	Q13206	875 aa	Known RBP	18.52	■□□□□ 0.56
COL12A1-205	ENST00000425443	ANP32E	Q9BTT0	268 aa		18.52	■□□□□ 0.55
COL12A1-205	ENST00000425443	TARBP1	Q13395	1621 aa	Known RBP	18.5	■□□□□ 0.55
COL12A1-205	ENST00000425443	MRC2	Q9UBG0	1479 aa		18.49	■□□□□ 0.55
COL12A1-205	ENST00000425443	SAMD9	Q5K651	1589 aa		18.49	■□□□□ 0.55
COL12A1-205	ENST00000425443	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	18.48	■□□□□ 0.55
COL12A1-205	ENST00000425443	NCOA2	Q15596	1464 aa		18.46	■□□□□ 0.54
COL12A1-205	ENST00000425443	GRIN2B	Q13224	1484 aa		18.45	■□□□□ 0.54
COL12A1-205	ENST00000425443	PBRM1	Q86U86	1689 aa		18.43	■□□□□ 0.54
COL12A1-205	ENST00000425443	MYOM3	Q5VTT5	1437 aa		18.43	■□□□□ 0.54
COL12A1-205	ENST00000425443	CHIC2	Q9UKJ5	165 aa		18.42	■□□□□ 0.54
COL12A1-205	ENST00000425443	EIF5B	O60841	1220 aa	Known RBP	18.41	■□□□□ 0.54
COL12A1-205	ENST00000425443	PPP1R15A	O75807	674 aa	Predicted RBP	18.41	■□□□□ 0.54
COL12A1-205	ENST00000425443	IQGAP2	Q13576	1575 aa		18.41	■□□□□ 0.54
COL12A1-205	ENST00000425443	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.4	■□□□□ 0.54
COL12A1-205	ENST00000425443	BCAN	Q96GW7	911 aa		18.4	■□□□□ 0.54
COL12A1-205	ENST00000425443	ANO8	Q9HCE9	1232 aa	Predicted RBP	18.4	■□□□□ 0.54
COL12A1-205	ENST00000425443	TSHZ2	Q9NRE2	1034 aa		18.4	■□□□□ 0.54
COL12A1-205	ENST00000425443	EHBP1L1	Q8N3D4	1523 aa		18.39	■□□□□ 0.53
COL12A1-205	ENST00000425443	TIMELESS	Q9UNS1	1208 aa		18.39	■□□□□ 0.53
COL12A1-205	ENST00000425443	CCDC18	Q5T9S5	1454 aa		18.39	■□□□□ 0.53
COL12A1-205	ENST00000425443	RRP7BP	Q9NSQ0	103 aa		18.38	■□□□□ 0.53
COL12A1-205	ENST00000425443	TONSL	Q96HA7	1378 aa		18.38	■□□□□ 0.53
COL12A1-205	ENST00000425443	THOC2	Q8NI27	1593 aa	Known RBP	18.38	■□□□□ 0.53
COL12A1-205	ENST00000425443	PTPRK	Q15262	1439 aa		18.37	■□□□□ 0.53
COL12A1-205	ENST00000425443	ZNF608	Q9ULD9	1512 aa	Predicted RBP	18.37	■□□□□ 0.53
COL12A1-205	ENST00000425443	LRRIQ1	Q96JM4	1722 aa		18.37	■□□□□ 0.53
COL12A1-205	ENST00000425443	FBLN2	P98095	1184 aa		18.37	■□□□□ 0.53
COL12A1-205	ENST00000425443	ADAMTS12	P58397	1594 aa		18.37	■□□□□ 0.53
COL12A1-205	ENST00000425443	TRIM52	Q96A61	297 aa		18.36	■□□□□ 0.53
COL12A1-205	ENST00000425443	ERCC6	Q03468	1493 aa		18.36	■□□□□ 0.53
COL12A1-205	ENST00000425443	IFT140	Q96RY7	1462 aa		18.36	■□□□□ 0.53
COL12A1-205	ENST00000425443	HFM1	A2PYH4	1435 aa		18.34	■□□□□ 0.53
COL12A1-205	ENST00000425443	HECW1	Q76N89	1606 aa		18.34	■□□□□ 0.53
COL12A1-205	ENST00000425443	PLEKHG5	O94827	1062 aa		18.34	■□□□□ 0.53
COL12A1-205	ENST00000425443	CHMP7	Q8WUX9	453 aa	Predicted RBP	18.32	■□□□□ 0.52
COL12A1-205	ENST00000425443	EPRS	P07814	1512 aa	Known RBP	18.31	■□□□□ 0.52
COL12A1-205	ENST00000425443	UACA	Q9BZF9	1416 aa		18.31	■□□□□ 0.52
COL12A1-205	ENST00000425443	PTPN23	Q9H3S7	1636 aa		18.31	■□□□□ 0.52
COL12A1-205	ENST00000425443	CDK13	Q14004	1512 aa	Known RBP	18.3	■□□□□ 0.52
COL12A1-205	ENST00000425443	NAIP	Q13075	1403 aa		18.3	■□□□□ 0.52
COL12A1-205	ENST00000425443	MAGI3	Q5TCQ9	1506 aa		18.29	■□□□□ 0.52
COL12A1-205	ENST00000425443	UGGT2	Q9NYU1	1516 aa		18.29	■□□□□ 0.52
COL12A1-205	ENST00000425443	FKBP8	Q14318	412 aa		18.28	■□□□□ 0.52
COL12A1-205	ENST00000425443	CDK11A	Q9UQ88	783 aa	Predicted RBP	18.28	■□□□□ 0.52
COL12A1-205	ENST00000425443	WDR62	O43379	1518 aa		18.26	■□□□□ 0.51
COL12A1-205	ENST00000425443	KIAA0586	Q9BVV6	1533 aa		18.25	■□□□□ 0.51
COL12A1-205	ENST00000425443	DAXX	Q9UER7	740 aa	Predicted RBP	18.23	■□□□□ 0.51
COL12A1-205	ENST00000425443	GRIN2A	Q12879	1464 aa		18.21	■□□□□ 0.51
COL12A1-205	ENST00000425443	KDM5B	Q9UGL1	1544 aa		18.21	■□□□□ 0.51
COL12A1-205	ENST00000425443	ANP32C	O43423	234 aa		18.21	■□□□□ 0.51
COL12A1-205	ENST00000425443	ARHGEF11	O15085	1522 aa		18.21	■□□□□ 0.5
COL12A1-205	ENST00000425443	MIA2	Q96PC5	1412 aa		18.19	■□□□□ 0.5
COL12A1-205	ENST00000425443	EIF4G3	O43432	1585 aa	Known RBP	18.19	■□□□□ 0.5
COL12A1-205	ENST00000425443	TCOF1	Q13428	1488 aa	Known RBP	18.17	■□□□□ 0.5
COL12A1-205	ENST00000425443	KIAA0556	O60303	1618 aa		18.17	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms