RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 CCNB3Q8WWL7 1395 aa17.55■□□□□ 0.4
PTPRN-204ENST00000423636 URB2Q14146 1524 aaKnown RBP17.55■□□□□ 0.4
PTPRN-204ENST00000423636 PHLDB1Q86UU1 1377 aa17.53■□□□□ 0.4
PTPRN-204ENST00000423636 DHX57Q6P158 1386 aaKnown RBP17.53■□□□□ 0.4
PTPRN-204ENST00000423636 CHIC2Q9UKJ5 165 aa17.51■□□□□ 0.39
PTPRN-204ENST00000423636 AQRO60306 1485 aaKnown RBP eCLIP17.5■□□□□ 0.39
PTPRN-204ENST00000423636 GTF3C3Q9Y5Q9 886 aa17.48■□□□□ 0.39
PTPRN-204ENST00000423636 ACIN1Q9UKV3 1341 aaKnown RBP17.46■□□□□ 0.39
PTPRN-204ENST00000423636 RAB3GAP2Q9H2M9 1393 aa17.46■□□□□ 0.39
PTPRN-204ENST00000423636 DNMBPQ6XZF7 1577 aa17.44■□□□□ 0.38
PTPRN-204ENST00000423636 PRDM2Q13029 1718 aa17.41■□□□□ 0.38
PTPRN-204ENST00000423636 GAPVD1Q14C86 1478 aa17.4■□□□□ 0.38
PTPRN-204ENST00000423636 PDS5BQ9NTI5 1447 aa17.4■□□□□ 0.38
PTPRN-204ENST00000423636 RRP7BPQ9NSQ0 103 aa17.4■□□□□ 0.38
PTPRN-204ENST00000423636 ABCA10Q8WWZ4 1543 aa17.4■□□□□ 0.38
PTPRN-204ENST00000423636 MTUS2Q5JR59 1369 aa17.38■□□□□ 0.37
PTPRN-204ENST00000423636 PCF11O94913 1555 aaKnown RBP17.38■□□□□ 0.37
PTPRN-204ENST00000423636 LRRC9Q6ZRR7 1453 aa17.38■□□□□ 0.37
PTPRN-204ENST00000423636 RRBP1Q9P2E9 1410 aaKnown RBP17.37■□□□□ 0.37
PTPRN-204ENST00000423636 KIF21AQ7Z4S6 1674 aa17.37■□□□□ 0.37
PTPRN-204ENST00000423636 KCNH8Q96L42 1107 aa17.36■□□□□ 0.37
PTPRN-204ENST00000423636 TIAM1Q13009 1591 aa17.34■□□□□ 0.37
PTPRN-204ENST00000423636 CENPBP07199 599 aaPredicted RBP17.34■□□□□ 0.37
PTPRN-204ENST00000423636 ZNF608Q9ULD9 1512 aaPredicted RBP17.32■□□□□ 0.36
PTPRN-204ENST00000423636 FOXD1Q16676 465 aa17.31■□□□□ 0.36
PTPRN-204ENST00000423636 FHAD1B1AJZ9 1412 aa17.31■□□□□ 0.36
PTPRN-204ENST00000423636 TRIM52Q96A61 297 aa17.29■□□□□ 0.36
PTPRN-204ENST00000423636 DDX10Q13206 875 aaKnown RBP17.29■□□□□ 0.36
PTPRN-204ENST00000423636 LAMC3Q9Y6N6 1575 aa17.27■□□□□ 0.35
PTPRN-204ENST00000423636 SETD5Q9C0A6 1442 aa17.26■□□□□ 0.35
PTPRN-204ENST00000423636 CNGB1Q14028 1251 aaPredicted RBP17.26■□□□□ 0.35
PTPRN-204ENST00000423636 ZNF777Q9ULD5 760 aaPredicted RBP17.26■□□□□ 0.35
PTPRN-204ENST00000423636 CHMP7Q8WUX9 453 aaPredicted RBP17.23■□□□□ 0.35
PTPRN-204ENST00000423636 ZNF644Q9H582 1327 aaPredicted RBP17.23■□□□□ 0.35
PTPRN-204ENST00000423636 ERCC6Q03468 1493 aa17.22■□□□□ 0.35
PTPRN-204ENST00000423636 PTPRKQ15262 1439 aa17.21■□□□□ 0.35
PTPRN-204ENST00000423636 CASKIN1Q8WXD9 1431 aa17.19■□□□□ 0.34
PTPRN-204ENST00000423636 FMN1Q68DA7 1419 aa17.17■□□□□ 0.34
PTPRN-204ENST00000423636 CDK13Q14004 1512 aaKnown RBP17.16■□□□□ 0.34
PTPRN-204ENST00000423636 MAPKBP1O60336 1514 aa17.15■□□□□ 0.34
PTPRN-204ENST00000423636 FGD6Q6ZV73 1430 aa17.14■□□□□ 0.33
PTPRN-204ENST00000423636 FYCO1Q9BQS8 1478 aa17.13■□□□□ 0.33
PTPRN-204ENST00000423636 ABCA5Q8WWZ7 1642 aa17.12■□□□□ 0.33
PTPRN-204ENST00000423636 NCOA2Q15596 1464 aa17.12■□□□□ 0.33
PTPRN-204ENST00000423636 SNAPC4Q5SXM2 1469 aa17.12■□□□□ 0.33
PTPRN-204ENST00000423636 CTTNBP2Q8WZ74 1663 aa17.12■□□□□ 0.33
PTPRN-204ENST00000423636 CUL7Q14999 1698 aa17.11■□□□□ 0.33
PTPRN-204ENST00000423636 WDR97A6NE52 1622 aa17.1■□□□□ 0.33
PTPRN-204ENST00000423636 TARBP1Q13395 1621 aaKnown RBP17.1■□□□□ 0.33
PTPRN-204ENST00000423636 MRC2Q9UBG0 1479 aa17.1■□□□□ 0.33
PTPRN-204ENST00000423636 MAGI3Q5TCQ9 1506 aa17.09■□□□□ 0.33
PTPRN-204ENST00000423636 CLSPNQ9HAW4 1339 aa17.08■□□□□ 0.32
PTPRN-204ENST00000423636 LRRIQ1Q96JM4 1722 aa17.07■□□□□ 0.32
PTPRN-204ENST00000423636 ZNF326Q5BKZ1 582 aaKnown RBP17.06■□□□□ 0.32
PTPRN-204ENST00000423636 TONSLQ96HA7 1378 aa17.05■□□□□ 0.32
PTPRN-204ENST00000423636 SENP3-EIF4A1A0A087X0R7 540 aa17.05■□□□□ 0.32
PTPRN-204ENST00000423636 EFCAB5A4FU69 1503 aa17.05■□□□□ 0.32
PTPRN-204ENST00000423636 POLR3GLQ9BT43 218 aa17.04■□□□□ 0.32
PTPRN-204ENST00000423636 PPP1R15AO75807 674 aaPredicted RBP17.03■□□□□ 0.32
PTPRN-204ENST00000423636 CFAP43Q8NDM7 1665 aa17.03■□□□□ 0.32
PTPRN-204ENST00000423636 GRIN2BQ13224 1484 aa17.03■□□□□ 0.32
PTPRN-204ENST00000423636 CCDC18Q5T9S5 1454 aa17.03■□□□□ 0.32
PTPRN-204ENST00000423636 BCANQ96GW7 911 aa17.02■□□□□ 0.32
PTPRN-204ENST00000423636 MYOM3Q5VTT5 1437 aa17.02■□□□□ 0.31
PTPRN-204ENST00000423636 JPH4Q96JJ6 628 aa17.01■□□□□ 0.31
PTPRN-204ENST00000423636 MAP3K1Q13233 1512 aa16.99■□□□□ 0.31
PTPRN-204ENST00000423636 THOC2Q8NI27 1593 aaKnown RBP16.99■□□□□ 0.31
PTPRN-204ENST00000423636 PBRM1Q86U86 1689 aa16.98■□□□□ 0.31
PTPRN-204ENST00000423636 PRG4Q92954 1404 aaPredicted RBP16.98■□□□□ 0.31
PTPRN-204ENST00000423636 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
PTPRN-204ENST00000423636 EPRSP07814 1512 aaKnown RBP16.97■□□□□ 0.31
PTPRN-204ENST00000423636 PLB1Q6P1J6 1458 aa16.97■□□□□ 0.31
PTPRN-204ENST00000423636 NAIPQ13075 1403 aa16.97■□□□□ 0.31
PTPRN-204ENST00000423636 CFDP1Q9UEE9 299 aaPredicted RBP16.96■□□□□ 0.31
PTPRN-204ENST00000423636 SAMD9Q5K651 1589 aa16.96■□□□□ 0.3
PTPRN-204ENST00000423636 MPHOSPH9Q99550 1183 aa16.95■□□□□ 0.3
PTPRN-204ENST00000423636 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
PTPRN-204ENST00000423636 ADAMTS12P58397 1594 aa16.93■□□□□ 0.3
PTPRN-204ENST00000423636 IFT140Q96RY7 1462 aa16.92■□□□□ 0.3
PTPRN-204ENST00000423636 KDM6BO15054 1643 aa16.92■□□□□ 0.3
PTPRN-204ENST00000423636 L3MBTL2Q969R5 705 aa16.91■□□□□ 0.3
PTPRN-204ENST00000423636 PTPN23Q9H3S7 1636 aa16.89■□□□□ 0.29
PTPRN-204ENST00000423636 EIF4G3O43432 1585 aaKnown RBP16.89■□□□□ 0.29
PTPRN-204ENST00000423636 GRIN2AQ12879 1464 aa16.89■□□□□ 0.29
PTPRN-204ENST00000423636 HNRNPMP52272 730 aaKnown RBP eCLIP16.89■□□□□ 0.29
PTPRN-204ENST00000423636 DISP1Q96F81 1524 aa16.88■□□□□ 0.29
PTPRN-204ENST00000423636 HFM1A2PYH4 1435 aa16.88■□□□□ 0.29
PTPRN-204ENST00000423636 CDK11AQ9UQ88 783 aaPredicted RBP16.88■□□□□ 0.29
PTPRN-204ENST00000423636 SUPT6HQ7KZ85 1726 aaKnown RBP16.88■□□□□ 0.29
PTPRN-204ENST00000423636 HSPA5P11021 654 aaKnown RBP16.86■□□□□ 0.29
PTPRN-204ENST00000423636 KDM2AQ9Y2K7 1162 aa16.86■□□□□ 0.29
PTPRN-204ENST00000423636 NUP153P49790 1475 aaKnown RBP16.85■□□□□ 0.29
PTPRN-204ENST00000423636 UACAQ9BZF9 1416 aa16.85■□□□□ 0.29
PTPRN-204ENST00000423636 UGGT2Q9NYU1 1516 aa16.84■□□□□ 0.29
PTPRN-204ENST00000423636 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.84■□□□□ 0.29
PTPRN-204ENST00000423636 EHBP1L1Q8N3D4 1523 aa16.84■□□□□ 0.29
PTPRN-204ENST00000423636 PLEKHD1A6NEE1 506 aa16.84■□□□□ 0.29
PTPRN-204ENST00000423636 ANP32CO43423 234 aa16.83■□□□□ 0.29
PTPRN-204ENST00000423636 KIAA0586Q9BVV6 1533 aa16.83■□□□□ 0.28
PTPRN-204ENST00000423636 C11orf95C9JLR9 678 aaPredicted RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms