RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 SOGA1O94964 1423 aa16.43■□□□□ 0.22
PTPRF-205ENST00000414879 CLSPNQ9HAW4 1339 aa16.43■□□□□ 0.22
PTPRF-205ENST00000414879 CARMIL2Q6F5E8 1435 aa16.42■□□□□ 0.22
PTPRF-205ENST00000414879 CFDP1Q9UEE9 299 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-205ENST00000414879 CHIC2Q9UKJ5 165 aa16.41■□□□□ 0.22
PTPRF-205ENST00000414879 CHGAP10645 457 aaKnown RBP16.36■□□□□ 0.21
PTPRF-205ENST00000414879 FMN1Q68DA7 1419 aa16.35■□□□□ 0.21
PTPRF-205ENST00000414879 VPS8Q8N3P4 1428 aa16.34■□□□□ 0.21
PTPRF-205ENST00000414879 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.34■□□□□ 0.21
PTPRF-205ENST00000414879 ZBTB47Q9UFB7 747 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-205ENST00000414879 CCNB3Q8WWL7 1395 aa16.33■□□□□ 0.2
PTPRF-205ENST00000414879 KCNH8Q96L42 1107 aa16.31■□□□□ 0.2
PTPRF-205ENST00000414879 CC2D2AQ9P2K1 1620 aa16.29■□□□□ 0.2
PTPRF-205ENST00000414879 RAPGEF2Q9Y4G8 1499 aa16.28■□□□□ 0.2
PTPRF-205ENST00000414879 TIMELESSQ9UNS1 1208 aa16.28■□□□□ 0.2
PTPRF-205ENST00000414879 SLC24A1O60721 1099 aa16.26■□□□□ 0.19
PTPRF-205ENST00000414879 EIF4G2P78344 907 aaKnown RBP eCLIP16.26■□□□□ 0.192e-6■■■■■ 34.6
PTPRF-205ENST00000414879 RRP7BPQ9NSQ0 103 aa16.26■□□□□ 0.19
PTPRF-205ENST00000414879 CDCA8Q53HL2 280 aa16.25■□□□□ 0.19
PTPRF-205ENST00000414879 FANCD2Q9BXW9 1451 aa16.25■□□□□ 0.19
PTPRF-205ENST00000414879 CANXP27824 592 aaKnown RBP16.23■□□□□ 0.19
PTPRF-205ENST00000414879 CFTRP13569 1480 aa16.22■□□□□ 0.19
PTPRF-205ENST00000414879 ARHGAP35Q9NRY4 1499 aa16.21■□□□□ 0.19
PTPRF-205ENST00000414879 TDRD9Q8NDG6 1382 aaKnown RBP16.21■□□□□ 0.19
PTPRF-205ENST00000414879 KANK1Q14678 1352 aa16.17■□□□□ 0.18
PTPRF-205ENST00000414879 TOP2BQ02880 1626 aa16.15■□□□□ 0.18
PTPRF-205ENST00000414879 RSPH4AQ5TD94 716 aa16.15■□□□□ 0.18
PTPRF-205ENST00000414879 DDX10Q13206 875 aaKnown RBP16.15■□□□□ 0.18
PTPRF-205ENST00000414879 PRDM2Q13029 1718 aa16.14■□□□□ 0.17
PTPRF-205ENST00000414879 TMC1Q8TDI8 760 aa16.14■□□□□ 0.17
PTPRF-205ENST00000414879 KDM2AQ9Y2K7 1162 aa16.14■□□□□ 0.17
PTPRF-205ENST00000414879 PPP1R15AO75807 674 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-205ENST00000414879 SYNJ1O43426 1573 aa16.11■□□□□ 0.17
PTPRF-205ENST00000414879 BIVM-ERCC5R4GMW8 1640 aa16.1■□□□□ 0.17
PTPRF-205ENST00000414879 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-205ENST00000414879 WDR43Q15061 677 aaKnown RBP eCLIP16.09■□□□□ 0.17
PTPRF-205ENST00000414879 EFCAB2Q5VUJ9 269 aa16.09■□□□□ 0.17
PTPRF-205ENST00000414879 SETD5Q9C0A6 1442 aa16.08■□□□□ 0.17
PTPRF-205ENST00000414879 HDGFP51858 240 aaKnown RBP16.08■□□□□ 0.17
PTPRF-205ENST00000414879 CCDC18Q5T9S5 1454 aa16.08■□□□□ 0.16
PTPRF-205ENST00000414879 RTL5Q5HYW3 569 aaPredicted RBP16.08■□□□□ 0.16
PTPRF-205ENST00000414879 GTF3C3Q9Y5Q9 886 aa16.08■□□□□ 0.16
PTPRF-205ENST00000414879 HNRNPUQ00839 825 aaKnown RBP eCLIP16.05■□□□□ 0.16
PTPRF-205ENST00000414879 KIF21BO75037 1637 aa16.04■□□□□ 0.16
PTPRF-205ENST00000414879 ANKRD30AQ9BXX3 1397 aa16.03■□□□□ 0.16
PTPRF-205ENST00000414879 LAMC3Q9Y6N6 1575 aa16.03■□□□□ 0.16
PTPRF-205ENST00000414879 ARID4BQ4LE39 1312 aaPredicted RBP16.02■□□□□ 0.16
PTPRF-205ENST00000414879 MRS2Q9HD23 443 aa16.02■□□□□ 0.16
PTPRF-205ENST00000414879 JPH4Q96JJ6 628 aa16.02■□□□□ 0.15
PTPRF-205ENST00000414879 FGD5Q6ZNL6 1462 aa16.01■□□□□ 0.15
PTPRF-205ENST00000414879 GAPVD1Q14C86 1478 aa16.01■□□□□ 0.15
PTPRF-205ENST00000414879 CARD11Q9BXL7 1154 aa16■□□□□ 0.15
PTPRF-205ENST00000414879 CFAP53Q96M91 514 aa15.99■□□□□ 0.15
PTPRF-205ENST00000414879 FAM9BQ8IZU0 186 aa15.98■□□□□ 0.15
PTPRF-205ENST00000414879 RGL3Q3MIN7 710 aa15.97■□□□□ 0.15
PTPRF-205ENST00000414879 CUX1P39880 1505 aa15.96■□□□□ 0.15
PTPRF-205ENST00000414879 KNSTRNQ9Y448 316 aa15.95■□□□□ 0.14
PTPRF-205ENST00000414879 PLPPR3Q6T4P5 718 aa15.94■□□□□ 0.14
PTPRF-205ENST00000414879 IGF1RP08069 1367 aa15.94■□□□□ 0.14
PTPRF-205ENST00000414879 ERICH3Q5RHP9 1530 aa15.94■□□□□ 0.14
PTPRF-205ENST00000414879 FHOD3Q2V2M9 1422 aa15.94■□□□□ 0.14
PTPRF-205ENST00000414879 DNMBPQ6XZF7 1577 aa15.92■□□□□ 0.14
PTPRF-205ENST00000414879 KANK4Q5T7N3 995 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-205ENST00000414879 PTPRGP23470 1445 aa15.91■□□□□ 0.14
PTPRF-205ENST00000414879 ANP32AP39687 249 aaKnown RBP15.89■□□□□ 0.13
PTPRF-205ENST00000414879 RUSC2Q8N2Y8 1516 aa15.89■□□□□ 0.13
PTPRF-205ENST00000414879 TMF1P82094 1093 aa15.88■□□□□ 0.13
PTPRF-205ENST00000414879 GRIN2BQ13224 1484 aa15.88■□□□□ 0.13
PTPRF-205ENST00000414879 UPF2Q9HAU5 1272 aaKnown RBP15.87■□□□□ 0.13
PTPRF-205ENST00000414879 POGKQ9P215 609 aa15.87■□□□□ 0.13
PTPRF-205ENST00000414879 MRC2Q9UBG0 1479 aa15.86■□□□□ 0.13
PTPRF-205ENST00000414879 PNNQ9H307 717 aaKnown RBP15.85■□□□□ 0.13
PTPRF-205ENST00000414879 NUDCQ9Y266 331 aa15.85■□□□□ 0.13
PTPRF-205ENST00000414879 C14orf37Q86TY3 774 aa15.85■□□□□ 0.13
PTPRF-205ENST00000414879 IFT140Q96RY7 1462 aa15.85■□□□□ 0.13
PTPRF-205ENST00000414879 OSCARQ8IYS5 282 aa15.84■□□□□ 0.13
PTPRF-205ENST00000414879 PKD2Q13563 968 aa15.84■□□□□ 0.13
PTPRF-205ENST00000414879 RAB3GAP2Q9H2M9 1393 aa15.83■□□□□ 0.13
PTPRF-205ENST00000414879 NUP155O75694 1391 aa15.83■□□□□ 0.12
PTPRF-205ENST00000414879 SPAG9O60271 1321 aaKnown RBP15.83■□□□□ 0.12
PTPRF-205ENST00000414879 FKBP8Q14318 412 aa15.83■□□□□ 0.12
PTPRF-205ENST00000414879 SIN3AQ96ST3 1273 aa15.83■□□□□ 0.12
PTPRF-205ENST00000414879 DCAF11Q8TEB1 546 aa15.82■□□□□ 0.12
PTPRF-205ENST00000414879 MPHOSPH9Q99550 1183 aa15.82■□□□□ 0.12
PTPRF-205ENST00000414879 MIER1Q8N108 512 aa15.81■□□□□ 0.12
PTPRF-205ENST00000414879 TOPBP1Q92547 1522 aa15.8■□□□□ 0.12
PTPRF-205ENST00000414879 RAD54L2Q9Y4B4 1467 aa15.8■□□□□ 0.12
PTPRF-205ENST00000414879 PRXQ9BXM0 1461 aa15.79■□□□□ 0.12
PTPRF-205ENST00000414879 EIF5BO60841 1220 aaKnown RBP15.79■□□□□ 0.12
PTPRF-205ENST00000414879 TRHP20396 242 aaPredicted RBP15.78■□□□□ 0.12
PTPRF-205ENST00000414879 CCDC136Q96JN2 1154 aa15.78■□□□□ 0.12
PTPRF-205ENST00000414879 MYH16Q9H6N6 1097 aa15.78■□□□□ 0.12
PTPRF-205ENST00000414879 EIF3AQ14152 1382 aaKnown RBP15.78■□□□□ 0.12
PTPRF-205ENST00000414879 EFCAB5A4FU69 1503 aa15.76■□□□□ 0.11
PTPRF-205ENST00000414879 NESP48681 1621 aa15.76■□□□□ 0.11
PTPRF-205ENST00000414879 NPM2Q86SE8 214 aaKnown RBP15.76■□□□□ 0.11
PTPRF-205ENST00000414879 GGT6Q6P531 493 aa15.75■□□□□ 0.11
PTPRF-205ENST00000414879 CCER2I3L3R5 266 aa15.75■□□□□ 0.11
PTPRF-205ENST00000414879 CHMP4BQ9H444 224 aaKnown RBP15.75■□□□□ 0.11
PTPRF-205ENST00000414879 ABCA10Q8WWZ4 1543 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms