RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 WDR43Q15061 677 aaKnown RBP eCLIP16.75■□□□□ 0.27
COL6A3-206ENST00000409809 PNNQ9H307 717 aaKnown RBP16.75■□□□□ 0.27
COL6A3-206ENST00000409809 MRS2Q9HD23 443 aa16.73■□□□□ 0.27
COL6A3-206ENST00000409809 FAM9BQ8IZU0 186 aa16.72■□□□□ 0.27
COL6A3-206ENST00000409809 ABCC9O60706 1549 aa16.69■□□□□ 0.26
COL6A3-206ENST00000409809 KIAA2012Q0VF49 1180 aa16.68■□□□□ 0.26
COL6A3-206ENST00000409809 HSP90AA2PQ14568 343 aaPredicted RBP16.67■□□□□ 0.26
COL6A3-206ENST00000409809 MS4A1P11836 297 aa16.67■□□□□ 0.26
COL6A3-206ENST00000409809 DDX10Q13206 875 aaKnown RBP16.67■□□□□ 0.26
COL6A3-206ENST00000409809 CALRP27797 417 aaKnown RBP16.64■□□□□ 0.25
COL6A3-206ENST00000409809 MIER1Q8N108 512 aa16.64■□□□□ 0.25
COL6A3-206ENST00000409809 LAS1LQ9Y4W2 734 aaKnown RBP16.63■□□□□ 0.25
COL6A3-206ENST00000409809 SETQ01105 290 aaPredicted RBP16.62■□□□□ 0.25
COL6A3-206ENST00000409809 ZCCHC6Q5VYS8 1495 aaKnown RBP16.62■□□□□ 0.25
COL6A3-206ENST00000409809 A0A0U1RQG5 324 aaPredicted RBP16.62■□□□□ 0.25
COL6A3-206ENST00000409809 SLC24A1O60721 1099 aa16.62■□□□□ 0.25
COL6A3-206ENST00000409809 SYAP1Q96A49 352 aaPredicted RBP16.61■□□□□ 0.25
COL6A3-206ENST00000409809 SUPT16HQ9Y5B9 1047 aaKnown RBP16.6■□□□□ 0.25
COL6A3-206ENST00000409809 GBP4Q96PP9 640 aa16.6■□□□□ 0.25
COL6A3-206ENST00000409809 RTN4Q9NQC3 1192 aaKnown RBP16.59■□□□□ 0.25
COL6A3-206ENST00000409809 HSCBQ8IWL3 235 aa16.59■□□□□ 0.25
COL6A3-206ENST00000409809 GOLGA6L3A6NEY3 463 aa16.58■□□□□ 0.25
COL6A3-206ENST00000409809 GOLGA6L1Q8N7Z2 621 aa16.58■□□□□ 0.24
COL6A3-206ENST00000409809 MTERF4Q7Z6M4 381 aaKnown RBP16.57■□□□□ 0.24
COL6A3-206ENST00000409809 EIF4G2P78344 907 aaKnown RBP eCLIP16.55■□□□□ 0.24
COL6A3-206ENST00000409809 EEA1Q15075 1411 aa16.54■□□□□ 0.24
COL6A3-206ENST00000409809 HSP90AB1P08238 724 aaKnown RBP16.53■□□□□ 0.24
COL6A3-206ENST00000409809 RB1CC1Q8TDY2 1594 aa16.53■□□□□ 0.24
COL6A3-206ENST00000409809 CDCA8Q53HL2 280 aa16.51■□□□□ 0.23
COL6A3-206ENST00000409809 RBM19Q9Y4C8 960 aaKnown RBP16.51■□□□□ 0.23
COL6A3-206ENST00000409809 PHF14O94880 888 aa16.5■□□□□ 0.23
COL6A3-206ENST00000409809 CSRNP3Q8WYN3 585 aa16.5■□□□□ 0.23
COL6A3-206ENST00000409809 MAP7D2Q96T17 732 aa16.49■□□□□ 0.23
COL6A3-206ENST00000409809 FTSJ3Q8IY81 847 aaKnown RBP16.48■□□□□ 0.23
COL6A3-206ENST00000409809 CCER2I3L3R5 266 aa16.47■□□□□ 0.23
COL6A3-206ENST00000409809 SCRIBQ14160 1630 aa16.46■□□□□ 0.23
COL6A3-206ENST00000409809 GOLGA6L4A6NEF3 574 aa16.45■□□□□ 0.22
COL6A3-206ENST00000409809 MCCP23508 829 aa16.45■□□□□ 0.22
COL6A3-206ENST00000409809 NACADO15069 1562 aa16.45■□□□□ 0.22
COL6A3-206ENST00000409809 TCERG1O14776 1098 aaKnown RBP16.44■□□□□ 0.22
COL6A3-206ENST00000409809 HTATSF1O43719 755 aaKnown RBP16.44■□□□□ 0.22
COL6A3-206ENST00000409809 TIMELESSQ9UNS1 1208 aa16.41■□□□□ 0.22
COL6A3-206ENST00000409809 DRC7Q8IY82 874 aa16.41■□□□□ 0.22
COL6A3-206ENST00000409809 IPO9Q96P70 1041 aaKnown RBP16.4■□□□□ 0.22
COL6A3-206ENST00000409809 CSPP1Q1MSJ5 1256 aa16.4■□□□□ 0.22
COL6A3-206ENST00000409809 NOM1Q5C9Z4 860 aaKnown RBP16.4■□□□□ 0.22
COL6A3-206ENST00000409809 GPS2Q13227 327 aa16.4■□□□□ 0.22
COL6A3-206ENST00000409809 CFAP53Q96M91 514 aa16.39■□□□□ 0.22
COL6A3-206ENST00000409809 DDX11L8A8MPP1 907 aa16.38■□□□□ 0.21
COL6A3-206ENST00000409809 TPM4P67936 248 aa16.37■□□□□ 0.21
COL6A3-206ENST00000409809 CCDC34Q96HJ3 373 aa16.36■□□□□ 0.21
COL6A3-206ENST00000409809 IRX6P78412 446 aaPredicted RBP16.36■□□□□ 0.21
COL6A3-206ENST00000409809 HAP1P54257 671 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-206ENST00000409809 TEX35Q5T0J7 233 aa16.34■□□□□ 0.21
COL6A3-206ENST00000409809 PLCB2Q00722 1185 aa16.34■□□□□ 0.21
COL6A3-206ENST00000409809 SKOR2Q2VWA4 1001 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-206ENST00000409809 RSF1Q96T23 1441 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-206ENST00000409809 VSIG10Q8N0Z9 540 aa16.33■□□□□ 0.2
COL6A3-206ENST00000409809 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.31■□□□□ 0.2
COL6A3-206ENST00000409809 TAF3Q5VWG9 929 aa16.31■□□□□ 0.2
COL6A3-206ENST00000409809 FANCIQ9NVI1 1328 aa16.3■□□□□ 0.2
COL6A3-206ENST00000409809 CLIP1P30622 1438 aa16.3■□□□□ 0.2
COL6A3-206ENST00000409809 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.3■□□□□ 0.2
COL6A3-206ENST00000409809 GOLGA3Q08378 1498 aa16.3■□□□□ 0.2
COL6A3-206ENST00000409809 NOC3LQ8WTT2 800 aaKnown RBP16.29■□□□□ 0.2
COL6A3-206ENST00000409809 CCDC66A2RUB6 948 aa16.27■□□□□ 0.2
COL6A3-206ENST00000409809 KNSTRNQ9Y448 316 aa16.27■□□□□ 0.19
COL6A3-206ENST00000409809 GSE1Q14687 1217 aa16.26■□□□□ 0.19
COL6A3-206ENST00000409809 PKNOX2Q96KN3 472 aa16.26■□□□□ 0.19
COL6A3-206ENST00000409809 AMER1Q5JTC6 1135 aaPredicted RBP16.25■□□□□ 0.19
COL6A3-206ENST00000409809 PABPN1Q86U42 306 aaKnown RBP eCLIP16.25■□□□□ 0.19
COL6A3-206ENST00000409809 CWC15Q9P013 229 aaKnown RBP16.25■□□□□ 0.19
COL6A3-206ENST00000409809 SALL2Q9Y467 1007 aaPredicted RBP16.25■□□□□ 0.19
COL6A3-206ENST00000409809 APPP05067 770 aa16.23■□□□□ 0.19
COL6A3-206ENST00000409809 ESF1Q9H501 851 aaKnown RBP16.23■□□□□ 0.19
COL6A3-206ENST00000409809 PHLDB1Q86UU1 1377 aa16.22■□□□□ 0.19
COL6A3-206ENST00000409809 RGS3P49796 1198 aa16.22■□□□□ 0.19
COL6A3-206ENST00000409809 CCDC70Q6NSX1 233 aa16.22■□□□□ 0.19
COL6A3-206ENST00000409809 FGD1P98174 961 aa16.21■□□□□ 0.19
COL6A3-206ENST00000409809 CALD1Q05682 793 aaKnown RBP16.21■□□□□ 0.19
COL6A3-206ENST00000409809 MTUS2Q5JR59 1369 aa16.2■□□□□ 0.18
COL6A3-206ENST00000409809 ZNF771Q7L3S4 317 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-206ENST00000409809 TPM2P07951 284 aa16.19■□□□□ 0.18
COL6A3-206ENST00000409809 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
COL6A3-206ENST00000409809 CHMP4CQ96CF2 233 aa16.17■□□□□ 0.18
COL6A3-206ENST00000409809 TSHZ2Q9NRE2 1034 aa16.17■□□□□ 0.18
COL6A3-206ENST00000409809 NUDCQ9Y266 331 aa16.16■□□□□ 0.18
COL6A3-206ENST00000409809 ATP6V1DQ9Y5K8 247 aa16.16■□□□□ 0.18
COL6A3-206ENST00000409809 CEP162Q5TB80 1403 aa16.16■□□□□ 0.18
COL6A3-206ENST00000409809 B4GALNT3Q6L9W6 998 aa16.16■□□□□ 0.18
COL6A3-206ENST00000409809 MAPK8IP3Q9UPT6 1336 aa16.15■□□□□ 0.18
COL6A3-206ENST00000409809 KCNJ4P48050 445 aa16.15■□□□□ 0.18
COL6A3-206ENST00000409809 FBLN2P98095 1184 aa16.15■□□□□ 0.18
COL6A3-206ENST00000409809 NPM1P06748 294 aaKnown RBP eCLIP16.14■□□□□ 0.17
COL6A3-206ENST00000409809 ACBD3Q9H3P7 528 aa16.14■□□□□ 0.17
COL6A3-206ENST00000409809 IPO8O15397 1037 aaKnown RBP16.13■□□□□ 0.17
COL6A3-206ENST00000409809 KIF3AQ9Y496 699 aa16.12■□□□□ 0.17
COL6A3-206ENST00000409809 TPM3P06753 285 aa16.12■□□□□ 0.17
COL6A3-206ENST00000409809 PMFBP1Q8TBY8 1022 aa16.12■□□□□ 0.17
COL6A3-206ENST00000409809 ARGLU1Q9NWB6 273 aaPredicted RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms