RNA–Protein interactions for RNA: ENST00000400555.7

PPP4R1-202, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PPP4R1, Length 3,885 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-202ENST00000400555 NCAPD3P42695 1498 aa17.96■□□□□ 0.47
PPP4R1-202ENST00000400555 RRP7BPQ9NSQ0 103 aa17.95■□□□□ 0.46
PPP4R1-202ENST00000400555 FHOD3Q2V2M9 1422 aa17.95■□□□□ 0.46
PPP4R1-202ENST00000400555 ANP32CO43423 234 aa17.95■□□□□ 0.46
PPP4R1-202ENST00000400555 POLR3GLQ9BT43 218 aa17.95■□□□□ 0.46
PPP4R1-202ENST00000400555 CADPSQ9ULU8 1353 aa17.93■□□□□ 0.46
PPP4R1-202ENST00000400555 PHLDB1Q86UU1 1377 aa17.93■□□□□ 0.46
PPP4R1-202ENST00000400555 SETD5Q9C0A6 1442 aa17.91■□□□□ 0.46
PPP4R1-202ENST00000400555 MTUS2Q5JR59 1369 aa17.9■□□□□ 0.46
PPP4R1-202ENST00000400555 CFTRP13569 1480 aa17.9■□□□□ 0.46
PPP4R1-202ENST00000400555 TONSLQ96HA7 1378 aa17.89■□□□□ 0.45
PPP4R1-202ENST00000400555 RAD54L2Q9Y4B4 1467 aa17.89■□□□□ 0.45
PPP4R1-202ENST00000400555 TDRD9Q8NDG6 1382 aaKnown RBP17.89■□□□□ 0.45
PPP4R1-202ENST00000400555 FGD5Q6ZNL6 1462 aa17.88■□□□□ 0.45
PPP4R1-202ENST00000400555 ERICH3Q5RHP9 1530 aa17.88■□□□□ 0.45
PPP4R1-202ENST00000400555 RRBP1Q9P2E9 1410 aaKnown RBP17.87■□□□□ 0.45
PPP4R1-202ENST00000400555 IRX6P78412 446 aaPredicted RBP17.87■□□□□ 0.45
PPP4R1-202ENST00000400555 SENP3-EIF4A1A0A087X0R7 540 aa17.82■□□□□ 0.44
PPP4R1-202ENST00000400555 FOXD1Q16676 465 aa17.81■□□□□ 0.44
PPP4R1-202ENST00000400555 ZNF326Q5BKZ1 582 aaKnown RBP17.81■□□□□ 0.44
PPP4R1-202ENST00000400555 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
PPP4R1-202ENST00000400555 PPP1R15AO75807 674 aaPredicted RBP17.79■□□□□ 0.44
PPP4R1-202ENST00000400555 BIVM-ERCC5R4GMW8 1640 aa17.79■□□□□ 0.44
PPP4R1-202ENST00000400555 HNRNPUQ00839 825 aaKnown RBP eCLIP17.78■□□□□ 0.44
PPP4R1-202ENST00000400555 FHAD1B1AJZ9 1412 aa17.78■□□□□ 0.44
PPP4R1-202ENST00000400555 NESP48681 1621 aa17.77■□□□□ 0.44
PPP4R1-202ENST00000400555 LRRC9Q6ZRR7 1453 aa17.76■□□□□ 0.43
PPP4R1-202ENST00000400555 FANCD2Q9BXW9 1451 aa17.76■□□□□ 0.43
PPP4R1-202ENST00000400555 FBLN2P98095 1184 aa17.76■□□□□ 0.43
PPP4R1-202ENST00000400555 HMGXB3Q12766 1538 aa17.74■□□□□ 0.43
PPP4R1-202ENST00000400555 ZNF777Q9ULD5 760 aaPredicted RBP17.73■□□□□ 0.43
PPP4R1-202ENST00000400555 TSHZ2Q9NRE2 1034 aa17.73■□□□□ 0.43
PPP4R1-202ENST00000400555 FAM9BQ8IZU0 186 aa17.71■□□□□ 0.42
PPP4R1-202ENST00000400555 WDR97A6NE52 1622 aa17.69■□□□□ 0.42
PPP4R1-202ENST00000400555 TIAM1Q13009 1591 aa17.67■□□□□ 0.42
PPP4R1-202ENST00000400555 MYT1Q01538 1121 aa17.65■□□□□ 0.42
PPP4R1-202ENST00000400555 MAPKBP1O60336 1514 aa17.63■□□□□ 0.41
PPP4R1-202ENST00000400555 HSPA5P11021 654 aaKnown RBP17.61■□□□□ 0.41
PPP4R1-202ENST00000400555 POLA1P09884 1462 aaPredicted RBP17.59■□□□□ 0.41
PPP4R1-202ENST00000400555 PCF11O94913 1555 aaKnown RBP17.58■□□□□ 0.41
PPP4R1-202ENST00000400555 EIF4G2P78344 907 aaKnown RBP eCLIP17.57■□□□□ 0.4
PPP4R1-202ENST00000400555 CC2D2AQ9P2K1 1620 aa17.57■□□□□ 0.4
PPP4R1-202ENST00000400555 FGD6Q6ZV73 1430 aa17.57■□□□□ 0.4
PPP4R1-202ENST00000400555 SLC4A1APQ9BWU0 796 aaKnown RBP17.56■□□□□ 0.4
PPP4R1-202ENST00000400555 FMN1Q68DA7 1419 aa17.56■□□□□ 0.4
PPP4R1-202ENST00000400555 CCDC18Q5T9S5 1454 aa17.55■□□□□ 0.4
PPP4R1-202ENST00000400555 MRS2Q9HD23 443 aa17.55■□□□□ 0.4
PPP4R1-202ENST00000400555 TIMELESSQ9UNS1 1208 aa17.54■□□□□ 0.4
PPP4R1-202ENST00000400555 L3MBTL2Q969R5 705 aa17.54■□□□□ 0.4
PPP4R1-202ENST00000400555 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
PPP4R1-202ENST00000400555 ERICH6Q7L0X2 663 aa17.53■□□□□ 0.4
PPP4R1-202ENST00000400555 MPHOSPH9Q99550 1183 aa17.52■□□□□ 0.4
PPP4R1-202ENST00000400555 ZNF644Q9H582 1327 aaPredicted RBP17.52■□□□□ 0.39
PPP4R1-202ENST00000400555 CASKIN1Q8WXD9 1431 aa17.51■□□□□ 0.39
PPP4R1-202ENST00000400555 PTPRKQ15262 1439 aa17.51■□□□□ 0.39
PPP4R1-202ENST00000400555 CCER2I3L3R5 266 aa17.5■□□□□ 0.39
PPP4R1-202ENST00000400555 KDM2AQ9Y2K7 1162 aa17.5■□□□□ 0.39
PPP4R1-202ENST00000400555 CCDC184Q52MB2 194 aa17.49■□□□□ 0.39
PPP4R1-202ENST00000400555 SALL2Q9Y467 1007 aaPredicted RBP17.48■□□□□ 0.39
PPP4R1-202ENST00000400555 RBM19Q9Y4C8 960 aaKnown RBP17.47■□□□□ 0.39
PPP4R1-202ENST00000400555 GAPVD1Q14C86 1478 aa17.46■□□□□ 0.39
PPP4R1-202ENST00000400555 NCOA2Q15596 1464 aa17.46■□□□□ 0.39
PPP4R1-202ENST00000400555 CDK11AQ9UQ88 783 aaPredicted RBP17.46■□□□□ 0.38
PPP4R1-202ENST00000400555 AQRO60306 1485 aaKnown RBP eCLIP17.45■□□□□ 0.383e-6■■■■□ 20.1
PPP4R1-202ENST00000400555 WASHC2AQ641Q2 1341 aa17.44■□□□□ 0.38
PPP4R1-202ENST00000400555 FYCO1Q9BQS8 1478 aa17.44■□□□□ 0.38
PPP4R1-202ENST00000400555 MYOM3Q5VTT5 1437 aa17.42■□□□□ 0.38
PPP4R1-202ENST00000400555 CFDP1Q9UEE9 299 aaPredicted RBP17.41■□□□□ 0.38
PPP4R1-202ENST00000400555 B4GALNT3Q6L9W6 998 aa17.41■□□□□ 0.38
PPP4R1-202ENST00000400555 CHMP7Q8WUX9 453 aaPredicted RBP17.41■□□□□ 0.38
PPP4R1-202ENST00000400555 ANP32EQ9BTT0 268 aa17.41■□□□□ 0.38
PPP4R1-202ENST00000400555 UACAQ9BZF9 1416 aa17.41■□□□□ 0.38
PPP4R1-202ENST00000400555 ABCA10Q8WWZ4 1543 aa17.41■□□□□ 0.38
PPP4R1-202ENST00000400555 C11orf95C9JLR9 678 aaPredicted RBP17.4■□□□□ 0.38
PPP4R1-202ENST00000400555 NAIPQ13075 1403 aa17.4■□□□□ 0.38
PPP4R1-202ENST00000400555 PDS5BQ9NTI5 1447 aa17.38■□□□□ 0.37
PPP4R1-202ENST00000400555 DNMBPQ6XZF7 1577 aa17.38■□□□□ 0.37
PPP4R1-202ENST00000400555 MAP3K1Q13233 1512 aa17.37■□□□□ 0.37
PPP4R1-202ENST00000400555 URB2Q14146 1524 aaKnown RBP17.37■□□□□ 0.37
PPP4R1-202ENST00000400555 NBPF8Q3BBV2 869 aa17.36■□□□□ 0.37
PPP4R1-202ENST00000400555 HFM1A2PYH4 1435 aa17.35■□□□□ 0.37
PPP4R1-202ENST00000400555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.34■□□□□ 0.371e-6■■□□□ 12.6
PPP4R1-202ENST00000400555 RGL3Q3MIN7 710 aa17.32■□□□□ 0.36
PPP4R1-202ENST00000400555 PKD2Q13563 968 aa17.32■□□□□ 0.36
PPP4R1-202ENST00000400555 CDK13Q14004 1512 aaKnown RBP17.31■□□□□ 0.36
PPP4R1-202ENST00000400555 PRKRIP1Q9H875 184 aaPredicted RBP17.3■□□□□ 0.36
PPP4R1-202ENST00000400555 EFCAB5A4FU69 1503 aa17.3■□□□□ 0.36
PPP4R1-202ENST00000400555 TMC1Q8TDI8 760 aa17.28■□□□□ 0.36
PPP4R1-202ENST00000400555 SNAPC4Q5SXM2 1469 aa17.25■□□□□ 0.35
PPP4R1-202ENST00000400555 CARD11Q9BXL7 1154 aa17.24■□□□□ 0.35
PPP4R1-202ENST00000400555 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.24■□□□□ 0.351e-18■■■■□ 20.3
PPP4R1-202ENST00000400555 KIF7Q2M1P5 1343 aa17.23■□□□□ 0.35
PPP4R1-202ENST00000400555 PTPN23Q9H3S7 1636 aa17.23■□□□□ 0.35
PPP4R1-202ENST00000400555 TSPY4P0CV99 314 aa17.23■□□□□ 0.35
PPP4R1-202ENST00000400555 TSPY10P0CW01 314 aa17.23■□□□□ 0.35
PPP4R1-202ENST00000400555 PLEKHD1A6NEE1 506 aa17.22■□□□□ 0.35
PPP4R1-202ENST00000400555 CFAP43Q8NDM7 1665 aa17.22■□□□□ 0.35
PPP4R1-202ENST00000400555 DCAF11Q8TEB1 546 aa17.22■□□□□ 0.35
PPP4R1-202ENST00000400555 MYT1LQ9UL68 1186 aa17.22■□□□□ 0.35
PPP4R1-202ENST00000400555 CCDC7Q96M83 1385 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms