RNA–Protein interactions for RNA: ENST00000399042.4

BRCC3-206, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene BRCC3, Length 954 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-206ENST00000399042 PBRM1Q86U86 1689 aa14.51□□□□□ -0.09
BRCC3-206ENST00000399042 DMRT2Q9Y5R5 561 aa14.5□□□□□ -0.09
BRCC3-206ENST00000399042 SYNJ2O15056 1496 aa14.48□□□□□ -0.09
BRCC3-206ENST00000399042 RAPGEF2Q9Y4G8 1499 aa14.48□□□□□ -0.09
BRCC3-206ENST00000399042 CUL7Q14999 1698 aa14.46□□□□□ -0.1
BRCC3-206ENST00000399042 OSCARQ8IYS5 282 aa14.45□□□□□ -0.1
BRCC3-206ENST00000399042 ADAMTS12P58397 1594 aa14.44□□□□□ -0.1
BRCC3-206ENST00000399042 CNKSR2Q8WXI2 1034 aa14.44□□□□□ -0.1
BRCC3-206ENST00000399042 LOC105371045A0A1W2PR82 267 aa14.43□□□□□ -0.1
BRCC3-206ENST00000399042 RANGAP1P46060 587 aaPredicted RBP14.43□□□□□ -0.1
BRCC3-206ENST00000399042 PRXQ9BXM0 1461 aa14.43□□□□□ -0.1
BRCC3-206ENST00000399042 GRIN2AQ12879 1464 aa14.42□□□□□ -0.1
BRCC3-206ENST00000399042 GOLGA3Q08378 1498 aa14.4□□□□□ -0.1
BRCC3-206ENST00000399042 KCNA4P22459 653 aa14.4□□□□□ -0.1
BRCC3-206ENST00000399042 NCBP3Q53F19 620 aaKnown RBP14.39□□□□□ -0.11
BRCC3-206ENST00000399042 KIF21BO75037 1637 aa14.36□□□□□ -0.11
BRCC3-206ENST00000399042 CHD1O14646 1710 aa14.34□□□□□ -0.11
BRCC3-206ENST00000399042 NUP160Q12769 1436 aa14.31□□□□□ -0.12
BRCC3-206ENST00000399042 JPH4Q96JJ6 628 aa14.3□□□□□ -0.12
BRCC3-206ENST00000399042 KIAA0586Q9BVV6 1533 aa14.29□□□□□ -0.12
BRCC3-206ENST00000399042 CEP170Q5SW79 1584 aa14.28□□□□□ -0.12
BRCC3-206ENST00000399042 TTBK1Q5TCY1 1321 aaPredicted RBP14.28□□□□□ -0.12
BRCC3-206ENST00000399042 TNIKQ9UKE5 1360 aa14.28□□□□□ -0.12
BRCC3-206ENST00000399042 P3H3Q8IVL6 736 aa14.26□□□□□ -0.13
BRCC3-206ENST00000399042 IQGAP2Q13576 1575 aa14.24□□□□□ -0.13
BRCC3-206ENST00000399042 NPM3O75607 178 aaKnown RBP14.23□□□□□ -0.13
BRCC3-206ENST00000399042 CARMIL2Q6F5E8 1435 aa14.23□□□□□ -0.13
BRCC3-206ENST00000399042 PRG4Q92954 1404 aaPredicted RBP14.22□□□□□ -0.13
BRCC3-206ENST00000399042 RNF216Q9NWF9 866 aaPredicted RBP14.2□□□□□ -0.14
BRCC3-206ENST00000399042 CLIP1P30622 1438 aa14.19□□□□□ -0.14
BRCC3-206ENST00000399042 CTTNBP2Q8WZ74 1663 aa14.19□□□□□ -0.14
BRCC3-206ENST00000399042 CLASP1Q7Z460 1538 aa14.19□□□□□ -0.14
BRCC3-206ENST00000399042 HOXD11P31277 338 aaPredicted RBP14.18□□□□□ -0.14
BRCC3-206ENST00000399042 CEP162Q5TB80 1403 aa14.17□□□□□ -0.14
BRCC3-206ENST00000399042 ATP1B4Q9UN42 357 aaPredicted RBP14.16□□□□□ -0.14
BRCC3-206ENST00000399042 UGGT2Q9NYU1 1516 aa14.14□□□□□ -0.15
BRCC3-206ENST00000399042 DNAJC5Q9H3Z4 198 aa14.12□□□□□ -0.15
BRCC3-206ENST00000399042 PTPRGP23470 1445 aa14.12□□□□□ -0.15
BRCC3-206ENST00000399042 FHOD3Q2V2M9 1422 aa14.11□□□□□ -0.15
BRCC3-206ENST00000399042 CYB5RLQ6IPT4 315 aa14.11□□□□□ -0.15
BRCC3-206ENST00000399042 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
BRCC3-206ENST00000399042 DISP1Q96F81 1524 aa14.09□□□□□ -0.15
BRCC3-206ENST00000399042 ARHGAP35Q9NRY4 1499 aa14.08□□□□□ -0.16
BRCC3-206ENST00000399042 ARHGEF11O15085 1522 aa14.08□□□□□ -0.16
BRCC3-206ENST00000399042 SHROOM2Q13796 1616 aa14.08□□□□□ -0.16
BRCC3-206ENST00000399042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.07□□□□□ -0.16
BRCC3-206ENST00000399042 HNRNPUL2Q1KMD3 747 aaKnown RBP14.07□□□□□ -0.16
BRCC3-206ENST00000399042 KIAA0556O60303 1618 aa14.07□□□□□ -0.16
BRCC3-206ENST00000399042 ERCC6L2Q5T890 1561 aa14.05□□□□□ -0.16
BRCC3-206ENST00000399042 NPM1P06748 294 aaKnown RBP eCLIP14.05□□□□□ -0.16
BRCC3-206ENST00000399042 APLP2Q06481 763 aa14.05□□□□□ -0.16
BRCC3-206ENST00000399042 FMN1Q68DA7 1419 aa14.05□□□□□ -0.16
BRCC3-206ENST00000399042 ARID3CA6NKF2 412 aa14.04□□□□□ -0.16
BRCC3-206ENST00000399042 SAMD9Q5K651 1589 aa14.03□□□□□ -0.16
BRCC3-206ENST00000399042 ARAP1Q96P48 1450 aa14.02□□□□□ -0.16
BRCC3-206ENST00000399042 RIMBP3CA6NJZ7 1639 aa14.01□□□□□ -0.17
BRCC3-206ENST00000399042 RIMBP3BA6NNM3 1639 aa14.01□□□□□ -0.17
BRCC3-206ENST00000399042 RIMBP3Q9UFD9 1639 aa14.01□□□□□ -0.17
BRCC3-206ENST00000399042 UACAQ9BZF9 1416 aa13.98□□□□□ -0.17
BRCC3-206ENST00000399042 PLB1Q6P1J6 1458 aa13.97□□□□□ -0.17
BRCC3-206ENST00000399042 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
BRCC3-206ENST00000399042 CDK11AQ9UQ88 783 aaPredicted RBP13.94□□□□□ -0.18
BRCC3-206ENST00000399042 CASKIN1Q8WXD9 1431 aa13.93□□□□□ -0.18
BRCC3-206ENST00000399042 PLEKHD1A6NEE1 506 aa13.9□□□□□ -0.18
BRCC3-206ENST00000399042 FYCO1Q9BQS8 1478 aa13.9□□□□□ -0.18
BRCC3-206ENST00000399042 RAPGEF6Q8TEU7 1601 aa13.9□□□□□ -0.19
BRCC3-206ENST00000399042 ABCC2Q92887 1545 aa13.9□□□□□ -0.19
BRCC3-206ENST00000399042 HECW1Q76N89 1606 aa13.88□□□□□ -0.19
BRCC3-206ENST00000399042 ABCA8O94911 1581 aa13.88□□□□□ -0.19
BRCC3-206ENST00000399042 UHRF1BP1LA0JNW5 1464 aa13.87□□□□□ -0.19
BRCC3-206ENST00000399042 KCNH8Q96L42 1107 aa13.87□□□□□ -0.19
BRCC3-206ENST00000399042 PCF11O94913 1555 aaKnown RBP13.87□□□□□ -0.19
BRCC3-206ENST00000399042 NUP153P49790 1475 aaKnown RBP13.87□□□□□ -0.19
BRCC3-206ENST00000399042 PPARGC1BQ86YN6 1023 aaKnown RBP13.86□□□□□ -0.19
BRCC3-206ENST00000399042 CCDC18Q5T9S5 1454 aa13.85□□□□□ -0.19
BRCC3-206ENST00000399042 EPRSP07814 1512 aaKnown RBP13.85□□□□□ -0.19
BRCC3-206ENST00000399042 ATP10BO94823 1461 aa13.84□□□□□ -0.19
BRCC3-206ENST00000399042 MTUS2Q5JR59 1369 aa13.83□□□□□ -0.19
BRCC3-206ENST00000399042 ADCY10Q96PN6 1610 aa13.83□□□□□ -0.2
BRCC3-206ENST00000399042 CDK13Q14004 1512 aaKnown RBP13.82□□□□□ -0.2
BRCC3-206ENST00000399042 KDM5BQ9UGL1 1544 aa13.8□□□□□ -0.2
BRCC3-206ENST00000399042 DCAF8L1A6NGE4 600 aa13.8□□□□□ -0.2
BRCC3-206ENST00000399042 TRHP20396 242 aaPredicted RBP13.8□□□□□ -0.2
BRCC3-206ENST00000399042 KANK4Q5T7N3 995 aaPredicted RBP13.78□□□□□ -0.2
BRCC3-206ENST00000399042 ASXL2Q76L83 1435 aa13.78□□□□□ -0.2
BRCC3-206ENST00000399042 ZCCHC11Q5TAX3 1644 aaKnown RBP13.76□□□□□ -0.21
BRCC3-206ENST00000399042 FAM69CQ0P6D2 419 aa13.76□□□□□ -0.21
BRCC3-206ENST00000399042 TIAM1Q13009 1591 aa13.75□□□□□ -0.21
BRCC3-206ENST00000399042 WDR7Q9Y4E6 1490 aa13.74□□□□□ -0.21
BRCC3-206ENST00000399042 TROQ12816 1431 aaPredicted RBP13.74□□□□□ -0.21
BRCC3-206ENST00000399042 MAP3K1Q13233 1512 aa13.73□□□□□ -0.21
BRCC3-206ENST00000399042 LRRC9Q6ZRR7 1453 aa13.73□□□□□ -0.21
BRCC3-206ENST00000399042 CCNB3Q8WWL7 1395 aa13.7□□□□□ -0.22
BRCC3-206ENST00000399042 MAPKBP1O60336 1514 aa13.69□□□□□ -0.22
BRCC3-206ENST00000399042 EHBP1L1Q8N3D4 1523 aa13.69□□□□□ -0.22
BRCC3-206ENST00000399042 ZNF777Q9ULD5 760 aaPredicted RBP13.68□□□□□ -0.22
BRCC3-206ENST00000399042 CFAP43Q8NDM7 1665 aa13.68□□□□□ -0.22
BRCC3-206ENST00000399042 SLC4A1APQ9BWU0 796 aaKnown RBP13.67□□□□□ -0.22
BRCC3-206ENST00000399042 LRRIQ1Q96JM4 1722 aa13.67□□□□□ -0.22
BRCC3-206ENST00000399042 KIF14Q15058 1648 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms