RNA–Protein interactions for RNA: ENST00000396410.8

PDXDC1-202, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDXDC1, Length 4,521 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-202ENST00000396410 ABCA10Q8WWZ4 1543 aa16.76■□□□□ 0.27
PDXDC1-202ENST00000396410 NEUROD1Q13562 356 aa16.75■□□□□ 0.27
PDXDC1-202ENST00000396410 RRBP1Q9P2E9 1410 aaKnown RBP16.74■□□□□ 0.27
PDXDC1-202ENST00000396410 LAMC3Q9Y6N6 1575 aa16.74■□□□□ 0.27
PDXDC1-202ENST00000396410 MTUS2Q5JR59 1369 aa16.74■□□□□ 0.27
PDXDC1-202ENST00000396410 DHX57Q6P158 1386 aaKnown RBP16.74■□□□□ 0.27
PDXDC1-202ENST00000396410 DNAJC5BQ9UF47 199 aa16.73■□□□□ 0.27
PDXDC1-202ENST00000396410 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
PDXDC1-202ENST00000396410 GAPVD1Q14C86 1478 aa16.7■□□□□ 0.26
PDXDC1-202ENST00000396410 FMN1Q68DA7 1419 aa16.69■□□□□ 0.26
PDXDC1-202ENST00000396410 MIER1Q8N108 512 aa16.69■□□□□ 0.26
PDXDC1-202ENST00000396410 LRRC9Q6ZRR7 1453 aa16.69■□□□□ 0.26
PDXDC1-202ENST00000396410 TIAM1Q13009 1591 aa16.69■□□□□ 0.26
PDXDC1-202ENST00000396410 ARID3CA6NKF2 412 aa16.68■□□□□ 0.26
PDXDC1-202ENST00000396410 URB2Q14146 1524 aaKnown RBP16.68■□□□□ 0.26
PDXDC1-202ENST00000396410 RAB3GAP2Q9H2M9 1393 aa16.67■□□□□ 0.26
PDXDC1-202ENST00000396410 SETD5Q9C0A6 1442 aa16.65■□□□□ 0.26
PDXDC1-202ENST00000396410 GTF3C3Q9Y5Q9 886 aa16.65■□□□□ 0.26
PDXDC1-202ENST00000396410 PHLDB1Q86UU1 1377 aa16.65■□□□□ 0.26
PDXDC1-202ENST00000396410 CUL7Q14999 1698 aa16.64■□□□□ 0.25
PDXDC1-202ENST00000396410 EFCAB5A4FU69 1503 aa16.63■□□□□ 0.25
PDXDC1-202ENST00000396410 FBLN2P98095 1184 aa16.61■□□□□ 0.25
PDXDC1-202ENST00000396410 CASKIN1Q8WXD9 1431 aa16.61■□□□□ 0.25
PDXDC1-202ENST00000396410 MAP3K1Q13233 1512 aa16.61■□□□□ 0.25
PDXDC1-202ENST00000396410 PCF11O94913 1555 aaKnown RBP16.61■□□□□ 0.25
PDXDC1-202ENST00000396410 FYCO1Q9BQS8 1478 aa16.6■□□□□ 0.25
PDXDC1-202ENST00000396410 TRIM52Q96A61 297 aa16.56■□□□□ 0.24
PDXDC1-202ENST00000396410 SIN3AQ96ST3 1273 aa16.55■□□□□ 0.24
PDXDC1-202ENST00000396410 AQRO60306 1485 aaKnown RBP eCLIP16.54■□□□□ 0.243e-7■■■■□ 23.4
PDXDC1-202ENST00000396410 CHIC2Q9UKJ5 165 aa16.53■□□□□ 0.24
PDXDC1-202ENST00000396410 ERCC6Q03468 1493 aa16.53■□□□□ 0.24
PDXDC1-202ENST00000396410 CTTNBP2Q8WZ74 1663 aa16.51■□□□□ 0.23
PDXDC1-202ENST00000396410 CHMP7Q8WUX9 453 aaPredicted RBP16.51■□□□□ 0.23
PDXDC1-202ENST00000396410 MRC2Q9UBG0 1479 aa16.5■□□□□ 0.23
PDXDC1-202ENST00000396410 KIF21AQ7Z4S6 1674 aa16.49■□□□□ 0.23
PDXDC1-202ENST00000396410 TONSLQ96HA7 1378 aa16.49■□□□□ 0.23
PDXDC1-202ENST00000396410 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
PDXDC1-202ENST00000396410 RRP7BPQ9NSQ0 103 aa16.48■□□□□ 0.23
PDXDC1-202ENST00000396410 FGD6Q6ZV73 1430 aa16.47■□□□□ 0.23
PDXDC1-202ENST00000396410 CFAP43Q8NDM7 1665 aa16.45■□□□□ 0.22
PDXDC1-202ENST00000396410 ABCA5Q8WWZ7 1642 aa16.44■□□□□ 0.22
PDXDC1-202ENST00000396410 GRIN2BQ13224 1484 aa16.44■□□□□ 0.22
PDXDC1-202ENST00000396410 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
PDXDC1-202ENST00000396410 DDX10Q13206 875 aaKnown RBP16.42■□□□□ 0.22
PDXDC1-202ENST00000396410 PELP1Q8IZL8 1130 aaKnown RBP16.41■□□□□ 0.22
PDXDC1-202ENST00000396410 TIMELESSQ9UNS1 1208 aa16.4■□□□□ 0.22
PDXDC1-202ENST00000396410 MYOM3Q5VTT5 1437 aa16.4■□□□□ 0.22
PDXDC1-202ENST00000396410 HIRIP3Q9BW71 556 aaPredicted RBP16.4■□□□□ 0.22
PDXDC1-202ENST00000396410 IFT140Q96RY7 1462 aa16.39■□□□□ 0.21
PDXDC1-202ENST00000396410 WDR97A6NE52 1622 aa16.38■□□□□ 0.21
PDXDC1-202ENST00000396410 CCDC18Q5T9S5 1454 aa16.38■□□□□ 0.21
PDXDC1-202ENST00000396410 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.38■□□□□ 0.216e-6■□□□□ 9.1
PDXDC1-202ENST00000396410 ZNF777Q9ULD5 760 aaPredicted RBP16.38■□□□□ 0.21
PDXDC1-202ENST00000396410 SNAPC4Q5SXM2 1469 aa16.37■□□□□ 0.21
PDXDC1-202ENST00000396410 IQGAP2Q13576 1575 aa16.36■□□□□ 0.21
PDXDC1-202ENST00000396410 EHBP1L1Q8N3D4 1523 aa16.36■□□□□ 0.21
PDXDC1-202ENST00000396410 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
PDXDC1-202ENST00000396410 SUPT6HQ7KZ85 1726 aaKnown RBP16.33■□□□□ 0.21
PDXDC1-202ENST00000396410 ANP32CO43423 234 aa16.33■□□□□ 0.2
PDXDC1-202ENST00000396410 ZNF608Q9ULD9 1512 aaPredicted RBP16.33■□□□□ 0.2
PDXDC1-202ENST00000396410 PPP1R15AO75807 674 aaPredicted RBP16.32■□□□□ 0.2
PDXDC1-202ENST00000396410 SAMD9Q5K651 1589 aa16.32■□□□□ 0.2
PDXDC1-202ENST00000396410 MAPKBP1O60336 1514 aa16.32■□□□□ 0.2
PDXDC1-202ENST00000396410 HECW1Q76N89 1606 aa16.32■□□□□ 0.2
PDXDC1-202ENST00000396410 PBRM1Q86U86 1689 aa16.3■□□□□ 0.2
PDXDC1-202ENST00000396410 ADAMTS12P58397 1594 aa16.28■□□□□ 0.2
PDXDC1-202ENST00000396410 THOC2Q8NI27 1593 aaKnown RBP16.28■□□□□ 0.2
PDXDC1-202ENST00000396410 HFM1A2PYH4 1435 aa16.28■□□□□ 0.2
PDXDC1-202ENST00000396410 CFDP1Q9UEE9 299 aaPredicted RBP16.28■□□□□ 0.2
PDXDC1-202ENST00000396410 UACAQ9BZF9 1416 aa16.28■□□□□ 0.2
PDXDC1-202ENST00000396410 EPRSP07814 1512 aaKnown RBP16.28■□□□□ 0.2
PDXDC1-202ENST00000396410 CDK13Q14004 1512 aaKnown RBP16.27■□□□□ 0.19
PDXDC1-202ENST00000396410 CARMIL2Q6F5E8 1435 aa16.25■□□□□ 0.19
PDXDC1-202ENST00000396410 KIAA0586Q9BVV6 1533 aa16.25■□□□□ 0.19
PDXDC1-202ENST00000396410 PLEKHD1A6NEE1 506 aa16.24■□□□□ 0.19
PDXDC1-202ENST00000396410 PTPN23Q9H3S7 1636 aa16.24■□□□□ 0.19
PDXDC1-202ENST00000396410 JPH4Q96JJ6 628 aa16.23■□□□□ 0.19
PDXDC1-202ENST00000396410 SLC4A1APQ9BWU0 796 aaKnown RBP16.23■□□□□ 0.19
PDXDC1-202ENST00000396410 PTPRKQ15262 1439 aa16.23■□□□□ 0.19
PDXDC1-202ENST00000396410 NAIPQ13075 1403 aa16.23■□□□□ 0.19
PDXDC1-202ENST00000396410 MPHOSPH9Q99550 1183 aa16.21■□□□□ 0.19
PDXDC1-202ENST00000396410 GRIN2AQ12879 1464 aa16.21■□□□□ 0.19
PDXDC1-202ENST00000396410 UGGT2Q9NYU1 1516 aa16.21■□□□□ 0.18
PDXDC1-202ENST00000396410 FOXD1Q16676 465 aa16.2■□□□□ 0.18
PDXDC1-202ENST00000396410 WDR62O43379 1518 aa16.2■□□□□ 0.18
PDXDC1-202ENST00000396410 MIA2Q96PC5 1412 aa16.19■□□□□ 0.18
PDXDC1-202ENST00000396410 ZNF326Q5BKZ1 582 aaKnown RBP16.18■□□□□ 0.18
PDXDC1-202ENST00000396410 ZNF644Q9H582 1327 aaPredicted RBP16.18■□□□□ 0.18
PDXDC1-202ENST00000396410 NEFLP07196 543 aa16.17■□□□□ 0.18
PDXDC1-202ENST00000396410 POLR3GLQ9BT43 218 aa16.16■□□□□ 0.18
PDXDC1-202ENST00000396410 EIF4G2P78344 907 aaKnown RBP eCLIP16.16■□□□□ 0.18
PDXDC1-202ENST00000396410 TSPY4P0CV99 314 aa16.15■□□□□ 0.18
PDXDC1-202ENST00000396410 TSPY10P0CW01 314 aa16.15■□□□□ 0.18
PDXDC1-202ENST00000396410 MAGI3Q5TCQ9 1506 aa16.14■□□□□ 0.17
PDXDC1-202ENST00000396410 MAGI1Q96QZ7 1491 aaPredicted RBP16.14■□□□□ 0.17
PDXDC1-202ENST00000396410 EIF4G3O43432 1585 aaKnown RBP16.14■□□□□ 0.17
PDXDC1-202ENST00000396410 SYNJ2O15056 1496 aa16.13■□□□□ 0.17
PDXDC1-202ENST00000396410 KCNH8Q96L42 1107 aa16.13■□□□□ 0.17
PDXDC1-202ENST00000396410 KIAA0556O60303 1618 aa16.12■□□□□ 0.17
PDXDC1-202ENST00000396410 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms