RNA–Protein interactions for RNA: ENST00000396355.5

NDE1-202, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,936 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-202ENST00000396355 ZNF608Q9ULD9 1512 aaPredicted RBP12.11□□□□□ -0.47
NDE1-202ENST00000396355 GOLGA3Q08378 1498 aa12.11□□□□□ -0.47
NDE1-202ENST00000396355 IFT140Q96RY7 1462 aa12.11□□□□□ -0.47
NDE1-202ENST00000396355 URB2Q14146 1524 aaKnown RBP12.1□□□□□ -0.47
NDE1-202ENST00000396355 ITGAEP38570 1179 aa12.09□□□□□ -0.47
NDE1-202ENST00000396355 UBTFP17480 764 aaKnown RBP12.07□□□□□ -0.48
NDE1-202ENST00000396355 KIF21BO75037 1637 aa12.07□□□□□ -0.48
NDE1-202ENST00000396355 SLC24A1O60721 1099 aa12.06□□□□□ -0.48
NDE1-202ENST00000396355 DEKP35659 375 aaKnown RBP12.05□□□□□ -0.48
NDE1-202ENST00000396355 TSHZ2Q9NRE2 1034 aa12.05□□□□□ -0.48
NDE1-202ENST00000396355 SALL2Q9Y467 1007 aaPredicted RBP12.04□□□□□ -0.48
NDE1-202ENST00000396355 FKBP8Q14318 412 aa12.04□□□□□ -0.48
NDE1-202ENST00000396355 MIER1Q8N108 512 aa12.03□□□□□ -0.48
NDE1-202ENST00000396355 APLP2Q06481 763 aa12.03□□□□□ -0.48
NDE1-202ENST00000396355 ARHGEF11O15085 1522 aa12.02□□□□□ -0.49
NDE1-202ENST00000396355 RAPGEF2Q9Y4G8 1499 aa12.02□□□□□ -0.49
NDE1-202ENST00000396355 TOPBP1Q92547 1522 aa12.01□□□□□ -0.49
NDE1-202ENST00000396355 RAD54L2Q9Y4B4 1467 aa12□□□□□ -0.49
NDE1-202ENST00000396355 TOP2BQ02880 1626 aa12□□□□□ -0.49
NDE1-202ENST00000396355 ZNF316A6NFI3 1004 aaPredicted RBP11.98□□□□□ -0.49
NDE1-202ENST00000396355 SUPT16HQ9Y5B9 1047 aaKnown RBP11.98□□□□□ -0.49
NDE1-202ENST00000396355 BIVM-ERCC5R4GMW8 1640 aa11.97□□□□□ -0.49
NDE1-202ENST00000396355 CLIP1P30622 1438 aa11.97□□□□□ -0.49
NDE1-202ENST00000396355 GLIPR1L2Q4G1C9 344 aa11.96□□□□□ -0.5
NDE1-202ENST00000396355 PODXL2Q9NZ53 605 aa11.94□□□□□ -0.5
NDE1-202ENST00000396355 FAM69CQ0P6D2 419 aa11.94□□□□□ -0.5
NDE1-202ENST00000396355 RIMBP3CA6NJZ7 1639 aa11.94□□□□□ -0.5
NDE1-202ENST00000396355 RIMBP3BA6NNM3 1639 aa11.94□□□□□ -0.5
NDE1-202ENST00000396355 RIMBP3Q9UFD9 1639 aa11.94□□□□□ -0.5
NDE1-202ENST00000396355 VPS8Q8N3P4 1428 aa11.94□□□□□ -0.5
NDE1-202ENST00000396355 CDK11AQ9UQ88 783 aaPredicted RBP11.93□□□□□ -0.5
NDE1-202ENST00000396355 PLEKHG5O94827 1062 aa11.92□□□□□ -0.5
NDE1-202ENST00000396355 SNAPC4Q5SXM2 1469 aa11.91□□□□□ -0.5
NDE1-202ENST00000396355 PKNOX2Q96KN3 472 aa11.9□□□□□ -0.5
NDE1-202ENST00000396355 RBM19Q9Y4C8 960 aaKnown RBP11.9□□□□□ -0.5
NDE1-202ENST00000396355 POLA1P09884 1462 aaPredicted RBP11.9□□□□□ -0.5
NDE1-202ENST00000396355 CUX1P39880 1505 aa11.9□□□□□ -0.5
NDE1-202ENST00000396355 A0A0U1RQG5 324 aaPredicted RBP11.89□□□□□ -0.51
NDE1-202ENST00000396355 PRXQ9BXM0 1461 aa11.87□□□□□ -0.51
NDE1-202ENST00000396355 FGD5Q6ZNL6 1462 aa11.87□□□□□ -0.51
NDE1-202ENST00000396355 GRIN2BQ13224 1484 aa11.86□□□□□ -0.51
NDE1-202ENST00000396355 JPH4Q96JJ6 628 aa11.86□□□□□ -0.51
NDE1-202ENST00000396355 ARAP1Q96P48 1450 aa11.86□□□□□ -0.51
NDE1-202ENST00000396355 DNMBPQ6XZF7 1577 aa11.86□□□□□ -0.51
NDE1-202ENST00000396355 HNRNPUL2Q1KMD3 747 aaKnown RBP11.86□□□□□ -0.51
NDE1-202ENST00000396355 ERICH3Q5RHP9 1530 aa11.85□□□□□ -0.51
NDE1-202ENST00000396355 GAPVD1Q14C86 1478 aa11.84□□□□□ -0.51
NDE1-202ENST00000396355 TIMELESSQ9UNS1 1208 aa11.84□□□□□ -0.51
NDE1-202ENST00000396355 EIF4G3O43432 1585 aaKnown RBP11.84□□□□□ -0.51
NDE1-202ENST00000396355 MYT1LQ9UL68 1186 aa11.82□□□□□ -0.52
NDE1-202ENST00000396355 VSIG10Q8N0Z9 540 aa11.8□□□□□ -0.52
NDE1-202ENST00000396355 IRX6P78412 446 aaPredicted RBP11.8□□□□□ -0.52
NDE1-202ENST00000396355 PLPPR3Q6T4P5 718 aa11.8□□□□□ -0.52
NDE1-202ENST00000396355 NPM2Q86SE8 214 aaKnown RBP11.8□□□□□ -0.52
NDE1-202ENST00000396355 PRDM2Q13029 1718 aa11.79□□□□□ -0.52
NDE1-202ENST00000396355 ATP1B4Q9UN42 357 aaPredicted RBP11.79□□□□□ -0.52
NDE1-202ENST00000396355 SYNJ2O15056 1496 aa11.78□□□□□ -0.52
NDE1-202ENST00000396355 DAXXQ9UER7 740 aaPredicted RBP11.77□□□□□ -0.53
NDE1-202ENST00000396355 ARID3CA6NKF2 412 aa11.76□□□□□ -0.53
NDE1-202ENST00000396355 MAGI1Q96QZ7 1491 aaPredicted RBP11.76□□□□□ -0.53
NDE1-202ENST00000396355 KANK4Q5T7N3 995 aaPredicted RBP11.76□□□□□ -0.53
NDE1-202ENST00000396355 KIF27Q86VH2 1401 aa11.75□□□□□ -0.53
NDE1-202ENST00000396355 KCNH8Q96L42 1107 aa11.75□□□□□ -0.53
NDE1-202ENST00000396355 IL27Q8NEV9 243 aa11.73□□□□□ -0.53
NDE1-202ENST00000396355 ARHGAP35Q9NRY4 1499 aa11.73□□□□□ -0.53
NDE1-202ENST00000396355 ARXQ96QS3 562 aa11.73□□□□□ -0.53
NDE1-202ENST00000396355 PRG4Q92954 1404 aaPredicted RBP11.72□□□□□ -0.53
NDE1-202ENST00000396355 CHD1O14646 1710 aa11.72□□□□□ -0.53
NDE1-202ENST00000396355 CNGB1Q14028 1251 aaPredicted RBP11.71□□□□□ -0.54
NDE1-202ENST00000396355 UBE2Q2Q8WVN8 375 aa11.71□□□□□ -0.54
NDE1-202ENST00000396355 ARID4BQ4LE39 1312 aaPredicted RBP11.71□□□□□ -0.54
NDE1-202ENST00000396355 TRIM52Q96A61 297 aa11.7□□□□□ -0.54
NDE1-202ENST00000396355 ANP32AP39687 249 aaKnown RBP11.68□□□□□ -0.54
NDE1-202ENST00000396355 DHX57Q6P158 1386 aaKnown RBP11.68□□□□□ -0.54
NDE1-202ENST00000396355 RRBP1Q9P2E9 1410 aaKnown RBP11.68□□□□□ -0.54
NDE1-202ENST00000396355 AMER1Q5JTC6 1135 aaPredicted RBP11.67□□□□□ -0.54
NDE1-202ENST00000396355 CLSPNQ9HAW4 1339 aa11.67□□□□□ -0.54
NDE1-202ENST00000396355 IGF1RP08069 1367 aa11.66□□□□□ -0.54
NDE1-202ENST00000396355 ZBTB47Q9UFB7 747 aaPredicted RBP11.66□□□□□ -0.54
NDE1-202ENST00000396355 FHAD1B1AJZ9 1412 aa11.65□□□□□ -0.54
NDE1-202ENST00000396355 P3H3Q8IVL6 736 aa11.64□□□□□ -0.55
NDE1-202ENST00000396355 TARBP1Q13395 1621 aaKnown RBP11.64□□□□□ -0.55
NDE1-202ENST00000396355 GRIN2AQ12879 1464 aa11.63□□□□□ -0.55
NDE1-202ENST00000396355 NEFMP07197 916 aa11.63□□□□□ -0.55
NDE1-202ENST00000396355 PTPRGP23470 1445 aa11.63□□□□□ -0.55
NDE1-202ENST00000396355 LAS1LQ9Y4W2 734 aaKnown RBP11.63□□□□□ -0.55
NDE1-202ENST00000396355 ERICH6BQ5W0A0 696 aa11.6□□□□□ -0.55
NDE1-202ENST00000396355 TIAM1Q13009 1591 aa11.6□□□□□ -0.55
NDE1-202ENST00000396355 CARMIL2Q6F5E8 1435 aa11.59□□□□□ -0.55
NDE1-202ENST00000396355 CCNB3Q8WWL7 1395 aa11.59□□□□□ -0.55
NDE1-202ENST00000396355 NOP58Q9Y2X3 529 aaKnown RBP11.58□□□□□ -0.56
NDE1-202ENST00000396355 CARMIL1Q5VZK9 1371 aa11.58□□□□□ -0.56
NDE1-202ENST00000396355 ABCA10Q8WWZ4 1543 aa11.58□□□□□ -0.56
NDE1-202ENST00000396355 NAP1L5Q96NT1 182 aaPredicted RBP11.57□□□□□ -0.56
NDE1-202ENST00000396355 ILDR1Q86SU0 546 aaPredicted RBP11.56□□□□□ -0.56
NDE1-202ENST00000396355 PCF11O94913 1555 aaKnown RBP11.56□□□□□ -0.56
NDE1-202ENST00000396355 MAPKBP1O60336 1514 aa11.54□□□□□ -0.56
NDE1-202ENST00000396355 CFAP43Q8NDM7 1665 aa11.54□□□□□ -0.56
NDE1-202ENST00000396355 MAP3K1Q13233 1512 aa11.54□□□□□ -0.56
NDE1-202ENST00000396355 LRRC9Q6ZRR7 1453 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms