RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 GTF3C3Q9Y5Q9 886 aa27.41■■□□□ 1.98
PCDHA1-202ENST00000394633 GAPVD1Q14C86 1478 aa27.36■■□□□ 1.97
PCDHA1-202ENST00000394633 APLP2Q06481 763 aa27.36■■□□□ 1.97
PCDHA1-202ENST00000394633 CARMIL1Q5VZK9 1371 aa27.34■■□□□ 1.97
PCDHA1-202ENST00000394633 ZNF608Q9ULD9 1512 aaPredicted RBP27.33■■□□□ 1.97
PCDHA1-202ENST00000394633 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
PCDHA1-202ENST00000394633 AQRO60306 1485 aaKnown RBP eCLIP27.31■■□□□ 1.96
PCDHA1-202ENST00000394633 RANGAP1P46060 587 aaPredicted RBP27.3■■□□□ 1.96
PCDHA1-202ENST00000394633 CUL7Q14999 1698 aa27.24■■□□□ 1.95
PCDHA1-202ENST00000394633 PBRM1Q86U86 1689 aa27.24■■□□□ 1.95
PCDHA1-202ENST00000394633 ARAP1Q96P48 1450 aa27.23■■□□□ 1.95
PCDHA1-202ENST00000394633 EIF4G3O43432 1585 aaKnown RBP27.19■■□□□ 1.94
PCDHA1-202ENST00000394633 MIER1Q8N108 512 aa27.18■■□□□ 1.94
PCDHA1-202ENST00000394633 YTHDC1Q96MU7 727 aaKnown RBP27.12■■□□□ 1.93
PCDHA1-202ENST00000394633 GRIN2BQ13224 1484 aa27.12■■□□□ 1.93
PCDHA1-202ENST00000394633 ADAMTS12P58397 1594 aa27.08■■□□□ 1.93
PCDHA1-202ENST00000394633 DHX57Q6P158 1386 aaKnown RBP27.06■■□□□ 1.92
PCDHA1-202ENST00000394633 KANK4Q5T7N3 995 aaPredicted RBP27.05■■□□□ 1.92
PCDHA1-202ENST00000394633 CLSPNQ9HAW4 1339 aa27.04■■□□□ 1.92
PCDHA1-202ENST00000394633 SNAPC4Q5SXM2 1469 aa27.03■■□□□ 1.92
PCDHA1-202ENST00000394633 FHAD1B1AJZ9 1412 aa27.01■■□□□ 1.92
PCDHA1-202ENST00000394633 RRBP1Q9P2E9 1410 aaKnown RBP26.99■■□□□ 1.91
PCDHA1-202ENST00000394633 CTTNBP2Q8WZ74 1663 aa26.98■■□□□ 1.91
PCDHA1-202ENST00000394633 ARHGAP35Q9NRY4 1499 aa26.95■■□□□ 1.9
PCDHA1-202ENST00000394633 MAGI1Q96QZ7 1491 aaPredicted RBP26.89■■□□□ 1.9
PCDHA1-202ENST00000394633 GRIN2AQ12879 1464 aa26.84■■□□□ 1.89
PCDHA1-202ENST00000394633 CCNB3Q8WWL7 1395 aa26.82■■□□□ 1.88
PCDHA1-202ENST00000394633 SYNJ2O15056 1496 aa26.82■■□□□ 1.88
PCDHA1-202ENST00000394633 P3H3Q8IVL6 736 aa26.78■■□□□ 1.88
PCDHA1-202ENST00000394633 FBLN2P98095 1184 aa26.77■■□□□ 1.88
PCDHA1-202ENST00000394633 CHMP7Q8WUX9 453 aaPredicted RBP26.76■■□□□ 1.87
PCDHA1-202ENST00000394633 IQGAP2Q13576 1575 aa26.74■■□□□ 1.87
PCDHA1-202ENST00000394633 FHOD3Q2V2M9 1422 aa26.73■■□□□ 1.87
PCDHA1-202ENST00000394633 TIAM1Q13009 1591 aa26.72■■□□□ 1.87
PCDHA1-202ENST00000394633 CEP170Q5SW79 1584 aa26.72■■□□□ 1.87
PCDHA1-202ENST00000394633 EFCAB5A4FU69 1503 aa26.71■■□□□ 1.87
PCDHA1-202ENST00000394633 SAMD9Q5K651 1589 aa26.7■■□□□ 1.86
PCDHA1-202ENST00000394633 MAP3K1Q13233 1512 aa26.7■■□□□ 1.86
PCDHA1-202ENST00000394633 KIAA0586Q9BVV6 1533 aa26.65■■□□□ 1.86
PCDHA1-202ENST00000394633 ITGAEP38570 1179 aa26.64■■□□□ 1.86
PCDHA1-202ENST00000394633 NUP160Q12769 1436 aa26.63■■□□□ 1.85
PCDHA1-202ENST00000394633 CHD1O14646 1710 aa26.62■■□□□ 1.85
PCDHA1-202ENST00000394633 RAB3GAP2Q9H2M9 1393 aa26.62■■□□□ 1.85
PCDHA1-202ENST00000394633 MAPKBP1O60336 1514 aa26.61■■□□□ 1.85
PCDHA1-202ENST00000394633 PCF11O94913 1555 aaKnown RBP26.59■■□□□ 1.85
PCDHA1-202ENST00000394633 LRRC9Q6ZRR7 1453 aa26.58■■□□□ 1.85
PCDHA1-202ENST00000394633 UGGT2Q9NYU1 1516 aa26.58■■□□□ 1.84
PCDHA1-202ENST00000394633 CFAP43Q8NDM7 1665 aa26.56■■□□□ 1.84
PCDHA1-202ENST00000394633 DISP1Q96F81 1524 aa26.52■■□□□ 1.84
PCDHA1-202ENST00000394633 PHLDB1Q86UU1 1377 aa26.5■■□□□ 1.83
PCDHA1-202ENST00000394633 SETD5Q9C0A6 1442 aa26.5■■□□□ 1.83
PCDHA1-202ENST00000394633 KIAA0556O60303 1618 aa26.48■■□□□ 1.83
PCDHA1-202ENST00000394633 FMN1Q68DA7 1419 aa26.48■■□□□ 1.83
PCDHA1-202ENST00000394633 CASKIN1Q8WXD9 1431 aa26.45■■□□□ 1.82
PCDHA1-202ENST00000394633 FYCO1Q9BQS8 1478 aa26.44■■□□□ 1.82
PCDHA1-202ENST00000394633 ATP1B4Q9UN42 357 aaPredicted RBP26.44■■□□□ 1.82
PCDHA1-202ENST00000394633 JPH4Q96JJ6 628 aa26.42■■□□□ 1.82
PCDHA1-202ENST00000394633 LRRIQ1Q96JM4 1722 aa26.4■■□□□ 1.82
PCDHA1-202ENST00000394633 SUPT16HQ9Y5B9 1047 aaKnown RBP26.38■■□□□ 1.81
PCDHA1-202ENST00000394633 MYT1Q01538 1121 aa26.37■■□□□ 1.81
PCDHA1-202ENST00000394633 FAM50AQ14320 339 aaKnown RBP26.37■■□□□ 1.81
PCDHA1-202ENST00000394633 SIN3AQ96ST3 1273 aa26.31■■□□□ 1.8
PCDHA1-202ENST00000394633 PRG4Q92954 1404 aaPredicted RBP26.28■■□□□ 1.8
PCDHA1-202ENST00000394633 CARMIL2Q6F5E8 1435 aa26.28■■□□□ 1.8
PCDHA1-202ENST00000394633 KCNH8Q96L42 1107 aa26.27■■□□□ 1.8
PCDHA1-202ENST00000394633 SHROOM2Q13796 1616 aa26.27■■□□□ 1.8
PCDHA1-202ENST00000394633 CLASP1Q7Z460 1538 aa26.27■■□□□ 1.8
PCDHA1-202ENST00000394633 HECW1Q76N89 1606 aa26.24■■□□□ 1.79
PCDHA1-202ENST00000394633 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.24■■□□□ 1.79
PCDHA1-202ENST00000394633 ERCC6L2Q5T890 1561 aa26.23■■□□□ 1.79
PCDHA1-202ENST00000394633 ARID3CA6NKF2 412 aa26.23■■□□□ 1.79
PCDHA1-202ENST00000394633 PLB1Q6P1J6 1458 aa26.22■■□□□ 1.79
PCDHA1-202ENST00000394633 CDK13Q14004 1512 aaKnown RBP26.2■■□□□ 1.78
PCDHA1-202ENST00000394633 RAPGEF6Q8TEU7 1601 aa26.2■■□□□ 1.78
PCDHA1-202ENST00000394633 TIMELESSQ9UNS1 1208 aa26.19■■□□□ 1.78
PCDHA1-202ENST00000394633 EPRSP07814 1512 aaKnown RBP26.19■■□□□ 1.78
PCDHA1-202ENST00000394633 NUP153P49790 1475 aaKnown RBP26.18■■□□□ 1.78
PCDHA1-202ENST00000394633 DDX10Q13206 875 aaKnown RBP26.17■■□□□ 1.78
PCDHA1-202ENST00000394633 MAGI3Q5TCQ9 1506 aa26.16■■□□□ 1.78
PCDHA1-202ENST00000394633 CCDC18Q5T9S5 1454 aa26.14■■□□□ 1.78
PCDHA1-202ENST00000394633 FGD6Q6ZV73 1430 aa26.14■■□□□ 1.77
PCDHA1-202ENST00000394633 PPP1R15AO75807 674 aaPredicted RBP26.13■■□□□ 1.77
PCDHA1-202ENST00000394633 MTUS2Q5JR59 1369 aa26.11■■□□□ 1.77
PCDHA1-202ENST00000394633 ABCA8O94911 1581 aa26.08■■□□□ 1.77
PCDHA1-202ENST00000394633 PTPRGP23470 1445 aa26.08■■□□□ 1.76
PCDHA1-202ENST00000394633 EHBP1L1Q8N3D4 1523 aa26.05■■□□□ 1.76
PCDHA1-202ENST00000394633 PTPN23Q9H3S7 1636 aa26.04■■□□□ 1.76
PCDHA1-202ENST00000394633 PTPRKQ15262 1439 aa26.03■■□□□ 1.76
PCDHA1-202ENST00000394633 HIRIP3Q9BW71 556 aaPredicted RBP26.03■■□□□ 1.76
PCDHA1-202ENST00000394633 HFM1A2PYH4 1435 aa26.01■■□□□ 1.75
PCDHA1-202ENST00000394633 OSCARQ8IYS5 282 aa26■■□□□ 1.75
PCDHA1-202ENST00000394633 TSHZ2Q9NRE2 1034 aa26■■□□□ 1.75
PCDHA1-202ENST00000394633 NCOA2Q15596 1464 aa26■■□□□ 1.75
PCDHA1-202ENST00000394633 UACAQ9BZF9 1416 aa25.99■■□□□ 1.75
PCDHA1-202ENST00000394633 SUPT6HQ7KZ85 1726 aaKnown RBP25.98■■□□□ 1.75
PCDHA1-202ENST00000394633 TONSLQ96HA7 1378 aa25.96■■□□□ 1.75
PCDHA1-202ENST00000394633 CCER2I3L3R5 266 aa25.94■■□□□ 1.74
PCDHA1-202ENST00000394633 MYOM3Q5VTT5 1437 aa25.94■■□□□ 1.74
PCDHA1-202ENST00000394633 ARHGEF11O15085 1522 aa25.94■■□□□ 1.74
PCDHA1-202ENST00000394633 NAIPQ13075 1403 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms