RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 MYT1LQ9UL68 1186 aa26.9■■□□□ 1.9
HOXC6-202ENST00000394331 DHX57Q6P158 1386 aaKnown RBP26.9■■□□□ 1.9
HOXC6-202ENST00000394331 MAP3K1Q13233 1512 aa26.9■■□□□ 1.9
HOXC6-202ENST00000394331 CCNB3Q8WWL7 1395 aa26.9■■□□□ 1.9
HOXC6-202ENST00000394331 DNMBPQ6XZF7 1577 aa26.84■■□□□ 1.89
HOXC6-202ENST00000394331 TIAM1Q13009 1591 aa26.8■■□□□ 1.88
HOXC6-202ENST00000394331 FHAD1B1AJZ9 1412 aa26.79■■□□□ 1.88
HOXC6-202ENST00000394331 FANCIQ9NVI1 1328 aa26.79■■□□□ 1.88
HOXC6-202ENST00000394331 ABCA10Q8WWZ4 1543 aa26.79■■□□□ 1.88
HOXC6-202ENST00000394331 TOPBP1Q92547 1522 aa26.76■■□□□ 1.88
HOXC6-202ENST00000394331 FKBP8Q14318 412 aa26.76■■□□□ 1.87
HOXC6-202ENST00000394331 POLA1P09884 1462 aaPredicted RBP26.74■■□□□ 1.87
HOXC6-202ENST00000394331 MSH5O43196 834 aa26.73■■□□□ 1.87
HOXC6-202ENST00000394331 RAD54L2Q9Y4B4 1467 aa26.72■■□□□ 1.87
HOXC6-202ENST00000394331 LRRC9Q6ZRR7 1453 aa26.71■■□□□ 1.87
HOXC6-202ENST00000394331 BCANQ96GW7 911 aa26.68■■□□□ 1.86
HOXC6-202ENST00000394331 NESP48681 1621 aa26.67■■□□□ 1.86
HOXC6-202ENST00000394331 NEFLP07196 543 aa26.66■■□□□ 1.86
HOXC6-202ENST00000394331 CUL7Q14999 1698 aa26.64■■□□□ 1.86
HOXC6-202ENST00000394331 EFCAB5A4FU69 1503 aa26.64■■□□□ 1.85
HOXC6-202ENST00000394331 ITGAEP38570 1179 aa26.63■■□□□ 1.85
HOXC6-202ENST00000394331 LAMC3Q9Y6N6 1575 aa26.63■■□□□ 1.85
HOXC6-202ENST00000394331 CFAP43Q8NDM7 1665 aa26.59■■□□□ 1.85
HOXC6-202ENST00000394331 PCF11O94913 1555 aaKnown RBP26.58■■□□□ 1.85
HOXC6-202ENST00000394331 P3H3Q8IVL6 736 aa26.58■■□□□ 1.85
HOXC6-202ENST00000394331 PHLDB1Q86UU1 1377 aa26.58■■□□□ 1.84
HOXC6-202ENST00000394331 RAB3GAP2Q9H2M9 1393 aa26.58■■□□□ 1.84
HOXC6-202ENST00000394331 AQRO60306 1485 aaKnown RBP eCLIP26.57■■□□□ 1.84
HOXC6-202ENST00000394331 FYCO1Q9BQS8 1478 aa26.56■■□□□ 1.84
HOXC6-202ENST00000394331 FHOD3Q2V2M9 1422 aa26.55■■□□□ 1.84
HOXC6-202ENST00000394331 CASKIN1Q8WXD9 1431 aa26.54■■□□□ 1.84
HOXC6-202ENST00000394331 SETD5Q9C0A6 1442 aa26.54■■□□□ 1.84
HOXC6-202ENST00000394331 URB2Q14146 1524 aaKnown RBP26.53■■□□□ 1.84
HOXC6-202ENST00000394331 ATP1B4Q9UN42 357 aaPredicted RBP26.51■■□□□ 1.83
HOXC6-202ENST00000394331 PDS5BQ9NTI5 1447 aa26.49■■□□□ 1.83
HOXC6-202ENST00000394331 KCNH8Q96L42 1107 aa26.49■■□□□ 1.83
HOXC6-202ENST00000394331 FMN1Q68DA7 1419 aa26.49■■□□□ 1.83
HOXC6-202ENST00000394331 CTTNBP2Q8WZ74 1663 aa26.48■■□□□ 1.83
HOXC6-202ENST00000394331 FAM50AQ14320 339 aaKnown RBP26.48■■□□□ 1.83
HOXC6-202ENST00000394331 WDR97A6NE52 1622 aa26.47■■□□□ 1.83
HOXC6-202ENST00000394331 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.45■■□□□ 1.82
HOXC6-202ENST00000394331 MAPKBP1O60336 1514 aa26.42■■□□□ 1.82
HOXC6-202ENST00000394331 ABCA5Q8WWZ7 1642 aa26.41■■□□□ 1.82
HOXC6-202ENST00000394331 ERICH6BQ5W0A0 696 aa26.41■■□□□ 1.82
HOXC6-202ENST00000394331 GAPVD1Q14C86 1478 aa26.41■■□□□ 1.82
HOXC6-202ENST00000394331 TDRD9Q8NDG6 1382 aaKnown RBP26.41■■□□□ 1.82
HOXC6-202ENST00000394331 DEKP35659 375 aaKnown RBP26.4■■□□□ 1.82
HOXC6-202ENST00000394331 CCER2I3L3R5 266 aa26.39■■□□□ 1.82
HOXC6-202ENST00000394331 SNAPC4Q5SXM2 1469 aa26.35■■□□□ 1.81
HOXC6-202ENST00000394331 CDK11AQ9UQ88 783 aaPredicted RBP26.34■■□□□ 1.81
HOXC6-202ENST00000394331 SAMD9Q5K651 1589 aa26.32■■□□□ 1.8
HOXC6-202ENST00000394331 TIMELESSQ9UNS1 1208 aa26.3■■□□□ 1.8
HOXC6-202ENST00000394331 MTUS2Q5JR59 1369 aa26.29■■□□□ 1.8
HOXC6-202ENST00000394331 FGD6Q6ZV73 1430 aa26.28■■□□□ 1.8
HOXC6-202ENST00000394331 THOC2Q8NI27 1593 aaKnown RBP26.24■■□□□ 1.79
HOXC6-202ENST00000394331 GRIN2BQ13224 1484 aa26.22■■□□□ 1.79
HOXC6-202ENST00000394331 PPP1R15AO75807 674 aaPredicted RBP26.21■■□□□ 1.79
HOXC6-202ENST00000394331 KIF21AQ7Z4S6 1674 aa26.21■■□□□ 1.79
HOXC6-202ENST00000394331 TARBP1Q13395 1621 aaKnown RBP26.2■■□□□ 1.78
HOXC6-202ENST00000394331 DNAJC5BQ9UF47 199 aa26.2■■□□□ 1.78
HOXC6-202ENST00000394331 SIN3AQ96ST3 1273 aa26.18■■□□□ 1.78
HOXC6-202ENST00000394331 ANO8Q9HCE9 1232 aaPredicted RBP26.18■■□□□ 1.78
HOXC6-202ENST00000394331 NCOA2Q15596 1464 aa26.15■■□□□ 1.78
HOXC6-202ENST00000394331 MYOM3Q5VTT5 1437 aa26.14■■□□□ 1.78
HOXC6-202ENST00000394331 EHBP1L1Q8N3D4 1523 aa26.13■■□□□ 1.77
HOXC6-202ENST00000394331 HFM1A2PYH4 1435 aa26.12■■□□□ 1.77
HOXC6-202ENST00000394331 DDX10Q13206 875 aaKnown RBP26.11■■□□□ 1.77
HOXC6-202ENST00000394331 CCDC18Q5T9S5 1454 aa26.1■■□□□ 1.77
HOXC6-202ENST00000394331 SUPT6HQ7KZ85 1726 aaKnown RBP26.09■■□□□ 1.77
HOXC6-202ENST00000394331 LRRIQ1Q96JM4 1722 aa26.08■■□□□ 1.77
HOXC6-202ENST00000394331 TRIM52Q96A61 297 aa26.08■■□□□ 1.77
HOXC6-202ENST00000394331 ANP32CO43423 234 aa26.06■■□□□ 1.76
HOXC6-202ENST00000394331 PTPRKQ15262 1439 aa26.06■■□□□ 1.76
HOXC6-202ENST00000394331 UACAQ9BZF9 1416 aa26.06■■□□□ 1.76
HOXC6-202ENST00000394331 MRC2Q9UBG0 1479 aa26.04■■□□□ 1.76
HOXC6-202ENST00000394331 PBRM1Q86U86 1689 aa26.03■■□□□ 1.76
HOXC6-202ENST00000394331 UGGT2Q9NYU1 1516 aa26.03■■□□□ 1.76
HOXC6-202ENST00000394331 NOP58Q9Y2X3 529 aaKnown RBP26.03■■□□□ 1.76
HOXC6-202ENST00000394331 ARHGEF11O15085 1522 aa26.02■■□□□ 1.76
HOXC6-202ENST00000394331 PTPN23Q9H3S7 1636 aa26.02■■□□□ 1.76
HOXC6-202ENST00000394331 IQGAP2Q13576 1575 aa26.02■■□□□ 1.76
HOXC6-202ENST00000394331 ADAMTS12P58397 1594 aa26.01■■□□□ 1.75
HOXC6-202ENST00000394331 NAIPQ13075 1403 aa26.01■■□□□ 1.75
HOXC6-202ENST00000394331 HECW1Q76N89 1606 aa26■■□□□ 1.75
HOXC6-202ENST00000394331 PPP4R2Q9NY27 417 aa26■■□□□ 1.75
HOXC6-202ENST00000394331 TONSLQ96HA7 1378 aa25.97■■□□□ 1.75
HOXC6-202ENST00000394331 MAGI3Q5TCQ9 1506 aa25.95■■□□□ 1.74
HOXC6-202ENST00000394331 SALL2Q9Y467 1007 aaPredicted RBP25.94■■□□□ 1.74
HOXC6-202ENST00000394331 TCOF1Q13428 1488 aaKnown RBP25.94■■□□□ 1.74
HOXC6-202ENST00000394331 UBE2Q2Q8WVN8 375 aa25.94■■□□□ 1.74
HOXC6-202ENST00000394331 EPRSP07814 1512 aaKnown RBP25.93■■□□□ 1.74
HOXC6-202ENST00000394331 IFT140Q96RY7 1462 aa25.91■■□□□ 1.74
HOXC6-202ENST00000394331 MIA2Q96PC5 1412 aa25.89■■□□□ 1.73
HOXC6-202ENST00000394331 AKNAQ7Z591 1439 aa25.87■■□□□ 1.73
HOXC6-202ENST00000394331 WDR62O43379 1518 aa25.86■■□□□ 1.73
HOXC6-202ENST00000394331 KIAA0586Q9BVV6 1533 aa25.82■■□□□ 1.72
HOXC6-202ENST00000394331 CDK13Q14004 1512 aaKnown RBP25.81■■□□□ 1.72
HOXC6-202ENST00000394331 RRP7BPQ9NSQ0 103 aa25.81■■□□□ 1.72
HOXC6-202ENST00000394331 ZNF608Q9ULD9 1512 aaPredicted RBP25.8■■□□□ 1.72
HOXC6-202ENST00000394331 NBR1Q14596 966 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms