RNA–Protein interactions for RNA: ENST00000392185.7

SNX9-201, Transcript of sorting nexin 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX9, Length 4,198 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9-201ENST00000392185 RAPGEF2Q9Y4G8 1499 aa23.02■■□□□ 1.28
SNX9-201ENST00000392185 KDM2AQ9Y2K7 1162 aa23.02■■□□□ 1.28
SNX9-201ENST00000392185 PLPPR3Q6T4P5 718 aa23.01■■□□□ 1.27
SNX9-201ENST00000392185 BCANQ96GW7 911 aa22.99■■□□□ 1.27
SNX9-201ENST00000392185 GTF3C3Q9Y5Q9 886 aa22.99■■□□□ 1.27
SNX9-201ENST00000392185 FANCD2Q9BXW9 1451 aa22.98■■□□□ 1.27
SNX9-201ENST00000392185 FHAD1B1AJZ9 1412 aa22.96■■□□□ 1.27
SNX9-201ENST00000392185 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
SNX9-201ENST00000392185 CCNB3Q8WWL7 1395 aa22.93■■□□□ 1.26
SNX9-201ENST00000392185 SIN3AQ96ST3 1273 aa22.93■■□□□ 1.26
SNX9-201ENST00000392185 ESF1Q9H501 851 aaKnown RBP22.9■■□□□ 1.26
SNX9-201ENST00000392185 SENP3Q9H4L4 574 aaPredicted RBP22.87■■□□□ 1.25
SNX9-201ENST00000392185 STAG3Q9UJ98 1225 aa22.85■■□□□ 1.25
SNX9-201ENST00000392185 RGL3Q3MIN7 710 aa22.84■■□□□ 1.25
SNX9-201ENST00000392185 FHOD3Q2V2M9 1422 aa22.83■■□□□ 1.25
SNX9-201ENST00000392185 MIER1Q8N108 512 aa22.82■■□□□ 1.24
SNX9-201ENST00000392185 ACIN1Q9UKV3 1341 aaKnown RBP22.79■■□□□ 1.24
SNX9-201ENST00000392185 RAD54L2Q9Y4B4 1467 aa22.79■■□□□ 1.24
SNX9-201ENST00000392185 FGD5Q6ZNL6 1462 aa22.77■■□□□ 1.24
SNX9-201ENST00000392185 DNAJC5BQ9UF47 199 aa22.77■■□□□ 1.24
SNX9-201ENST00000392185 IGF1RP08069 1367 aa22.76■■□□□ 1.23
SNX9-201ENST00000392185 BICRAQ9NZM4 1560 aa22.74■■□□□ 1.23
SNX9-201ENST00000392185 NESP48681 1621 aa22.72■■□□□ 1.23
SNX9-201ENST00000392185 FAM9BQ8IZU0 186 aa22.71■■□□□ 1.23
SNX9-201ENST00000392185 JPH4Q96JJ6 628 aa22.71■■□□□ 1.23
SNX9-201ENST00000392185 EIF4G2P78344 907 aaKnown RBP eCLIP22.69■■□□□ 1.22
SNX9-201ENST00000392185 FMN1Q68DA7 1419 aa22.69■■□□□ 1.22
SNX9-201ENST00000392185 HNRNPUQ00839 825 aaKnown RBP eCLIP22.67■■□□□ 1.22
SNX9-201ENST00000392185 CARMIL2Q6F5E8 1435 aa22.66■■□□□ 1.22
SNX9-201ENST00000392185 SALL2Q9Y467 1007 aaPredicted RBP22.66■■□□□ 1.22
SNX9-201ENST00000392185 ARHGAP35Q9NRY4 1499 aa22.64■■□□□ 1.21
SNX9-201ENST00000392185 CFTRP13569 1480 aa22.63■■□□□ 1.21
SNX9-201ENST00000392185 FOXD1Q16676 465 aa22.63■■□□□ 1.21
SNX9-201ENST00000392185 CC2D2AQ9P2K1 1620 aa22.6■■□□□ 1.21
SNX9-201ENST00000392185 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
SNX9-201ENST00000392185 GAPVD1Q14C86 1478 aa22.58■■□□□ 1.2
SNX9-201ENST00000392185 AQRO60306 1485 aaKnown RBP eCLIP22.57■■□□□ 1.22e-11■■■■■ 45
SNX9-201ENST00000392185 SETD5Q9C0A6 1442 aa22.56■■□□□ 1.2
SNX9-201ENST00000392185 RAB3GAP2Q9H2M9 1393 aa22.55■■□□□ 1.2
SNX9-201ENST00000392185 MRS2Q9HD23 443 aa22.55■■□□□ 1.2
SNX9-201ENST00000392185 TMC1Q8TDI8 760 aa22.53■■□□□ 1.2
SNX9-201ENST00000392185 CLSPNQ9HAW4 1339 aa22.53■■□□□ 1.2
SNX9-201ENST00000392185 SENP3-EIF4A1A0A087X0R7 540 aa22.52■■□□□ 1.2
SNX9-201ENST00000392185 CARD11Q9BXL7 1154 aa22.48■■□□□ 1.19
SNX9-201ENST00000392185 SLC24A1O60721 1099 aa22.46■■□□□ 1.19
SNX9-201ENST00000392185 ARID4BQ4LE39 1312 aaPredicted RBP22.46■■□□□ 1.19
SNX9-201ENST00000392185 HNRNPMP52272 730 aaKnown RBP eCLIP22.46■■□□□ 1.191e-6■■■■■ 27.4
SNX9-201ENST00000392185 HMGXB3Q12766 1538 aa22.46■■□□□ 1.19
SNX9-201ENST00000392185 PKD2Q13563 968 aa22.45■■□□□ 1.18
SNX9-201ENST00000392185 DAXXQ9UER7 740 aaPredicted RBP22.45■■□□□ 1.18
SNX9-201ENST00000392185 FKBP8Q14318 412 aa22.45■■□□□ 1.18
SNX9-201ENST00000392185 DCAF11Q8TEB1 546 aa22.42■■□□□ 1.18
SNX9-201ENST00000392185 BCL11AQ9H165 835 aa22.42■■□□□ 1.18
SNX9-201ENST00000392185 CUX1P39880 1505 aa22.41■■□□□ 1.18
SNX9-201ENST00000392185 NEFMP07197 916 aa22.41■■□□□ 1.18
SNX9-201ENST00000392185 MPHOSPH9Q99550 1183 aa22.39■■□□□ 1.18
SNX9-201ENST00000392185 EFCAB2Q5VUJ9 269 aa22.39■■□□□ 1.17
SNX9-201ENST00000392185 CANXP27824 592 aaKnown RBP22.39■■□□□ 1.17
SNX9-201ENST00000392185 GGT6Q6P531 493 aa22.39■■□□□ 1.17
SNX9-201ENST00000392185 PPP1R15AO75807 674 aaPredicted RBP22.38■■□□□ 1.17
SNX9-201ENST00000392185 MLECQ14165 292 aa22.38■■□□□ 1.17
SNX9-201ENST00000392185 PTPRGP23470 1445 aa22.34■■□□□ 1.17
SNX9-201ENST00000392185 NUP155O75694 1391 aa22.33■■□□□ 1.17
SNX9-201ENST00000392185 TOPBP1Q92547 1522 aa22.33■■□□□ 1.17
SNX9-201ENST00000392185 KIF21BO75037 1637 aa22.33■■□□□ 1.17
SNX9-201ENST00000392185 POLA1P09884 1462 aaPredicted RBP22.32■■□□□ 1.16
SNX9-201ENST00000392185 UNC13AQ9UPW8 1703 aa22.32■■□□□ 1.16
SNX9-201ENST00000392185 TRHP20396 242 aaPredicted RBP22.31■■□□□ 1.16
SNX9-201ENST00000392185 ARAP1Q96P48 1450 aa22.3■■□□□ 1.16
SNX9-201ENST00000392185 CCDC18Q5T9S5 1454 aa22.29■■□□□ 1.16
SNX9-201ENST00000392185 IRX6P78412 446 aaPredicted RBP22.29■■□□□ 1.16
SNX9-201ENST00000392185 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
SNX9-201ENST00000392185 PRXQ9BXM0 1461 aa22.27■■□□□ 1.16
SNX9-201ENST00000392185 TIMELESSQ9UNS1 1208 aa22.27■■□□□ 1.15
SNX9-201ENST00000392185 ZNF644Q9H582 1327 aaPredicted RBP22.26■■□□□ 1.15
SNX9-201ENST00000392185 PLEKHG5O94827 1062 aa22.26■■□□□ 1.15
SNX9-201ENST00000392185 ANKRD30AQ9BXX3 1397 aa22.26■■□□□ 1.15
SNX9-201ENST00000392185 WDR43Q15061 677 aaKnown RBP eCLIP22.26■■□□□ 1.15
SNX9-201ENST00000392185 SCAF1Q9H7N4 1312 aaKnown RBP22.25■■□□□ 1.15
SNX9-201ENST00000392185 CYB5RLQ6IPT4 315 aa22.24■■□□□ 1.15
SNX9-201ENST00000392185 KIF3BO15066 747 aa22.24■■□□□ 1.15
SNX9-201ENST00000392185 HSPA5P11021 654 aaKnown RBP22.24■■□□□ 1.15
SNX9-201ENST00000392185 L3MBTL2Q969R5 705 aa22.23■■□□□ 1.15
SNX9-201ENST00000392185 DHX57Q6P158 1386 aaKnown RBP22.22■■□□□ 1.15
SNX9-201ENST00000392185 PHLDB1Q86UU1 1377 aa22.22■■□□□ 1.15
SNX9-201ENST00000392185 GRIN2BQ13224 1484 aa22.21■■□□□ 1.15
SNX9-201ENST00000392185 OSCARQ8IYS5 282 aa22.19■■□□□ 1.14
SNX9-201ENST00000392185 SPAG9O60271 1321 aaKnown RBP22.18■■□□□ 1.14
SNX9-201ENST00000392185 MRC2Q9UBG0 1479 aa22.17■■□□□ 1.14
SNX9-201ENST00000392185 KANK1Q14678 1352 aa22.17■■□□□ 1.14
SNX9-201ENST00000392185 KNSTRNQ9Y448 316 aa22.17■■□□□ 1.14
SNX9-201ENST00000392185 ERICH3Q5RHP9 1530 aa22.14■■□□□ 1.14
SNX9-201ENST00000392185 SAFB2Q14151 953 aaKnown RBP eCLIP22.14■■□□□ 1.134e-6■□□□□ 10.6
SNX9-201ENST00000392185 CC2D1BQ5T0F9 858 aaKnown RBP22.12■■□□□ 1.13
SNX9-201ENST00000392185 PEG3Q9GZU2 1588 aa22.12■■□□□ 1.13
SNX9-201ENST00000392185 TNNT2P45379 298 aaPredicted RBP22.11■■□□□ 1.13
SNX9-201ENST00000392185 POGKQ9P215 609 aa22.11■■□□□ 1.13
SNX9-201ENST00000392185 CDCA8Q53HL2 280 aa22.1■■□□□ 1.13
SNX9-201ENST00000392185 LRRC9Q6ZRR7 1453 aa22.1■■□□□ 1.13
SNX9-201ENST00000392185 RSPH4AQ5TD94 716 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms