RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 GAPVD1Q14C86 1478 aa15.05■□□□□ -0
COL6A3-205ENST00000392004 EEA1Q15075 1411 aa15.04■□□□□ -0
COL6A3-205ENST00000392004 BCANQ96GW7 911 aa15.04■□□□□ -0
COL6A3-205ENST00000392004 IGF1RP08069 1367 aa15.04■□□□□ -0
COL6A3-205ENST00000392004 ARID4BQ4LE39 1312 aaPredicted RBP15.04■□□□□ -0
COL6A3-205ENST00000392004 CHGAP10645 457 aaKnown RBP15.03■□□□□ -0
COL6A3-205ENST00000392004 RRP7BPQ9NSQ0 103 aa15.03■□□□□ -0
COL6A3-205ENST00000392004 MRC2Q9UBG0 1479 aa15.02■□□□□ -0
COL6A3-205ENST00000392004 RAPGEF2Q9Y4G8 1499 aa15.02■□□□□ -0
COL6A3-205ENST00000392004 MLECQ14165 292 aa15.02□□□□□ -0.01
COL6A3-205ENST00000392004 TOPBP1Q92547 1522 aa15□□□□□ -0.01
COL6A3-205ENST00000392004 CFDP1Q9UEE9 299 aaPredicted RBP15□□□□□ -0.01
COL6A3-205ENST00000392004 TSPY4P0CV99 314 aa14.99□□□□□ -0.01
COL6A3-205ENST00000392004 TSPY10P0CW01 314 aa14.99□□□□□ -0.01
COL6A3-205ENST00000392004 MYT1Q01538 1121 aa14.99□□□□□ -0.01
COL6A3-205ENST00000392004 POLA1P09884 1462 aaPredicted RBP14.98□□□□□ -0.01
COL6A3-205ENST00000392004 FHOD3Q2V2M9 1422 aa14.97□□□□□ -0.01
COL6A3-205ENST00000392004 TNIKQ9UKE5 1360 aa14.97□□□□□ -0.01
COL6A3-205ENST00000392004 KANK4Q5T7N3 995 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-205ENST00000392004 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
COL6A3-205ENST00000392004 CUX1P39880 1505 aa14.94□□□□□ -0.02
COL6A3-205ENST00000392004 ZNF608Q9ULD9 1512 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-205ENST00000392004 SYNJ1O43426 1573 aa14.93□□□□□ -0.02
COL6A3-205ENST00000392004 CARMIL2Q6F5E8 1435 aa14.92□□□□□ -0.02
COL6A3-205ENST00000392004 CENPBP07199 599 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-205ENST00000392004 STAG3Q9UJ98 1225 aa14.9□□□□□ -0.02
COL6A3-205ENST00000392004 URB2Q14146 1524 aaKnown RBP14.89□□□□□ -0.03
COL6A3-205ENST00000392004 ACIN1Q9UKV3 1341 aaKnown RBP14.88□□□□□ -0.03
COL6A3-205ENST00000392004 PTPRGP23470 1445 aa14.87□□□□□ -0.03
COL6A3-205ENST00000392004 LAMC3Q9Y6N6 1575 aa14.86□□□□□ -0.03
COL6A3-205ENST00000392004 SNAPC4Q5SXM2 1469 aa14.84□□□□□ -0.03
COL6A3-205ENST00000392004 GRIN2BQ13224 1484 aa14.84□□□□□ -0.03
COL6A3-205ENST00000392004 FAM69CQ0P6D2 419 aa14.83□□□□□ -0.03
COL6A3-205ENST00000392004 IFT140Q96RY7 1462 aa14.82□□□□□ -0.04
COL6A3-205ENST00000392004 PEG3Q9GZU2 1588 aa14.82□□□□□ -0.04
COL6A3-205ENST00000392004 GGT6Q6P531 493 aa14.8□□□□□ -0.04
COL6A3-205ENST00000392004 HNRNPMP52272 730 aaKnown RBP eCLIP14.79□□□□□ -0.04
COL6A3-205ENST00000392004 KDM2AQ9Y2K7 1162 aa14.78□□□□□ -0.04
COL6A3-205ENST00000392004 CCNB3Q8WWL7 1395 aa14.77□□□□□ -0.04
COL6A3-205ENST00000392004 GTF3C3Q9Y5Q9 886 aa14.77□□□□□ -0.04
COL6A3-205ENST00000392004 PRG4Q92954 1404 aaPredicted RBP14.77□□□□□ -0.05
COL6A3-205ENST00000392004 RGL3Q3MIN7 710 aa14.77□□□□□ -0.05
COL6A3-205ENST00000392004 FHAD1B1AJZ9 1412 aa14.77□□□□□ -0.05
COL6A3-205ENST00000392004 DIEXFQ68CQ4 756 aaKnown RBP14.75□□□□□ -0.05
COL6A3-205ENST00000392004 DNMBPQ6XZF7 1577 aa14.75□□□□□ -0.05
COL6A3-205ENST00000392004 PLEKHG5O94827 1062 aa14.75□□□□□ -0.05
COL6A3-205ENST00000392004 EFCAB2Q5VUJ9 269 aa14.69□□□□□ -0.06
COL6A3-205ENST00000392004 YTHDC1Q96MU7 727 aaKnown RBP14.68□□□□□ -0.06
COL6A3-205ENST00000392004 TOP2BQ02880 1626 aa14.67□□□□□ -0.06
COL6A3-205ENST00000392004 ZNF644Q9H582 1327 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-205ENST00000392004 FOXD1Q16676 465 aa14.67□□□□□ -0.06
COL6A3-205ENST00000392004 FMN1Q68DA7 1419 aa14.67□□□□□ -0.06
COL6A3-205ENST00000392004 HIRIP3Q9BW71 556 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-205ENST00000392004 VPS8Q8N3P4 1428 aa14.66□□□□□ -0.06
COL6A3-205ENST00000392004 ABCA10Q8WWZ4 1543 aa14.62□□□□□ -0.07
COL6A3-205ENST00000392004 KIF3BO15066 747 aa14.62□□□□□ -0.07
COL6A3-205ENST00000392004 KIF21AQ7Z4S6 1674 aa14.61□□□□□ -0.07
COL6A3-205ENST00000392004 PPP1R15AO75807 674 aaPredicted RBP14.6□□□□□ -0.07
COL6A3-205ENST00000392004 AFAP1Q8N556 730 aa14.59□□□□□ -0.07
COL6A3-205ENST00000392004 SIN3AQ96ST3 1273 aa14.57□□□□□ -0.08
COL6A3-205ENST00000392004 RAPGEF3O95398 923 aa14.57□□□□□ -0.08
COL6A3-205ENST00000392004 NUTM2DQ5VT03 806 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-205ENST00000392004 SPAG9O60271 1321 aaKnown RBP14.55□□□□□ -0.08
COL6A3-205ENST00000392004 SYNJ2O15056 1496 aa14.55□□□□□ -0.08
COL6A3-205ENST00000392004 PRXQ9BXM0 1461 aa14.54□□□□□ -0.08
COL6A3-205ENST00000392004 GRIN2AQ12879 1464 aa14.53□□□□□ -0.08
COL6A3-205ENST00000392004 PRDM2Q13029 1718 aa14.53□□□□□ -0.08
COL6A3-205ENST00000392004 C14orf37Q86TY3 774 aa14.53□□□□□ -0.08
COL6A3-205ENST00000392004 ARAP1Q96P48 1450 aa14.51□□□□□ -0.09
COL6A3-205ENST00000392004 TONSLQ96HA7 1378 aa14.51□□□□□ -0.09
COL6A3-205ENST00000392004 ZNF316A6NFI3 1004 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-205ENST00000392004 PLB1Q6P1J6 1458 aa14.49□□□□□ -0.09
COL6A3-205ENST00000392004 ARHGAP35Q9NRY4 1499 aa14.49□□□□□ -0.09
COL6A3-205ENST00000392004 KIAA0586Q9BVV6 1533 aa14.47□□□□□ -0.09
COL6A3-205ENST00000392004 SAFB2Q14151 953 aaKnown RBP eCLIP14.46□□□□□ -0.1
COL6A3-205ENST00000392004 MAGI1Q96QZ7 1491 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-205ENST00000392004 WASHC2CQ9Y4E1 1318 aa14.45□□□□□ -0.1
COL6A3-205ENST00000392004 PKD2Q13563 968 aa14.45□□□□□ -0.1
COL6A3-205ENST00000392004 CCDC18Q5T9S5 1454 aa14.42□□□□□ -0.1
COL6A3-205ENST00000392004 NUP155O75694 1391 aa14.42□□□□□ -0.1
COL6A3-205ENST00000392004 KIF21BO75037 1637 aa14.4□□□□□ -0.1
COL6A3-205ENST00000392004 DCAF11Q8TEB1 546 aa14.39□□□□□ -0.11
COL6A3-205ENST00000392004 STK26Q9P289 416 aa14.39□□□□□ -0.11
COL6A3-205ENST00000392004 AEBP2Q6ZN18 517 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-205ENST00000392004 UACAQ9BZF9 1416 aa14.38□□□□□ -0.11
COL6A3-205ENST00000392004 CDK13Q14004 1512 aaKnown RBP14.38□□□□□ -0.11
COL6A3-205ENST00000392004 WDR62O43379 1518 aa14.37□□□□□ -0.11
COL6A3-205ENST00000392004 PHLDB1Q86UU1 1377 aa14.37□□□□□ -0.11
COL6A3-205ENST00000392004 ZBTB7CA1YPR0 619 aa14.36□□□□□ -0.11
COL6A3-205ENST00000392004 ERICH3Q5RHP9 1530 aa14.36□□□□□ -0.11
COL6A3-205ENST00000392004 EIF4G3O43432 1585 aaKnown RBP14.36□□□□□ -0.11
COL6A3-205ENST00000392004 SLC24A1O60721 1099 aa14.34□□□□□ -0.11
COL6A3-205ENST00000392004 LMOD2Q6P5Q4 547 aa14.34□□□□□ -0.11
COL6A3-205ENST00000392004 IQGAP2Q13576 1575 aa14.34□□□□□ -0.11
COL6A3-205ENST00000392004 SENP3-EIF4A1A0A087X0R7 540 aa14.33□□□□□ -0.12
COL6A3-205ENST00000392004 ANKRD30AQ9BXX3 1397 aa14.33□□□□□ -0.12
COL6A3-205ENST00000392004 TMC1Q8TDI8 760 aa14.33□□□□□ -0.12
COL6A3-205ENST00000392004 MPHOSPH9Q99550 1183 aa14.33□□□□□ -0.12
COL6A3-205ENST00000392004 NUTM2FA1L443 756 aa14.32□□□□□ -0.12
COL6A3-205ENST00000392004 DDX10Q13206 875 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms