RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CLSPNQ9HAW4 1339 aa23.7■■□□□ 1.38
NKX3-1-201ENST00000380871 RRBP1Q9P2E9 1410 aaKnown RBP23.69■■□□□ 1.38
NKX3-1-201ENST00000380871 PRDM2Q13029 1718 aa23.66■■□□□ 1.38
NKX3-1-201ENST00000380871 FHOD3Q2V2M9 1422 aa23.64■■□□□ 1.38
NKX3-1-201ENST00000380871 CCNB3Q8WWL7 1395 aa23.64■■□□□ 1.37
NKX3-1-201ENST00000380871 DNMBPQ6XZF7 1577 aa23.61■■□□□ 1.37
NKX3-1-201ENST00000380871 ARID3CA6NKF2 412 aa23.59■■□□□ 1.37
NKX3-1-201ENST00000380871 URB2Q14146 1524 aaKnown RBP23.59■■□□□ 1.37
NKX3-1-201ENST00000380871 PDS5BQ9NTI5 1447 aa23.54■■□□□ 1.36
NKX3-1-201ENST00000380871 ABCA10Q8WWZ4 1543 aa23.53■■□□□ 1.36
NKX3-1-201ENST00000380871 RAB3GAP2Q9H2M9 1393 aa23.52■■□□□ 1.36
NKX3-1-201ENST00000380871 KCNH8Q96L42 1107 aa23.49■■□□□ 1.35
NKX3-1-201ENST00000380871 PHLDB1Q86UU1 1377 aa23.47■■□□□ 1.35
NKX3-1-201ENST00000380871 SUPT16HQ9Y5B9 1047 aaKnown RBP23.47■■□□□ 1.35
NKX3-1-201ENST00000380871 MAPKBP1O60336 1514 aa23.45■■□□□ 1.35
NKX3-1-201ENST00000380871 FHAD1B1AJZ9 1412 aa23.44■■□□□ 1.34
NKX3-1-201ENST00000380871 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
NKX3-1-201ENST00000380871 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
NKX3-1-201ENST00000380871 TIAM1Q13009 1591 aa23.42■■□□□ 1.34
NKX3-1-201ENST00000380871 LRRC9Q6ZRR7 1453 aa23.41■■□□□ 1.34
NKX3-1-201ENST00000380871 SIN3AQ96ST3 1273 aa23.39■■□□□ 1.33
NKX3-1-201ENST00000380871 AQRO60306 1485 aaKnown RBP eCLIP23.39■■□□□ 1.33
NKX3-1-201ENST00000380871 PCF11O94913 1555 aaKnown RBP23.37■■□□□ 1.33
NKX3-1-201ENST00000380871 MTUS2Q5JR59 1369 aa23.35■■□□□ 1.33
NKX3-1-201ENST00000380871 SETD5Q9C0A6 1442 aa23.33■■□□□ 1.33
NKX3-1-201ENST00000380871 KIF21AQ7Z4S6 1674 aa23.32■■□□□ 1.32
NKX3-1-201ENST00000380871 FBLN2P98095 1184 aa23.31■■□□□ 1.32
NKX3-1-201ENST00000380871 WDR97A6NE52 1622 aa23.3■■□□□ 1.32
NKX3-1-201ENST00000380871 HIRIP3Q9BW71 556 aaPredicted RBP23.28■■□□□ 1.32
NKX3-1-201ENST00000380871 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
NKX3-1-201ENST00000380871 MAP3K1Q13233 1512 aa23.26■■□□□ 1.31
NKX3-1-201ENST00000380871 CHIC2Q9UKJ5 165 aa23.25■■□□□ 1.31
NKX3-1-201ENST00000380871 CASKIN1Q8WXD9 1431 aa23.24■■□□□ 1.31
NKX3-1-201ENST00000380871 FMN1Q68DA7 1419 aa23.24■■□□□ 1.31
NKX3-1-201ENST00000380871 CUL7Q14999 1698 aa23.23■■□□□ 1.31
NKX3-1-201ENST00000380871 MYT1Q01538 1121 aa23.23■■□□□ 1.31
NKX3-1-201ENST00000380871 FYCO1Q9BQS8 1478 aa23.18■■□□□ 1.3
NKX3-1-201ENST00000380871 BCANQ96GW7 911 aa23.18■■□□□ 1.3
NKX3-1-201ENST00000380871 CFAP43Q8NDM7 1665 aa23.17■■□□□ 1.3
NKX3-1-201ENST00000380871 EFCAB5A4FU69 1503 aa23.17■■□□□ 1.3
NKX3-1-201ENST00000380871 RRP7BPQ9NSQ0 103 aa23.16■■□□□ 1.3
NKX3-1-201ENST00000380871 ABCA5Q8WWZ7 1642 aa23.16■■□□□ 1.3
NKX3-1-201ENST00000380871 ZNF608Q9ULD9 1512 aaPredicted RBP23.16■■□□□ 1.3
NKX3-1-201ENST00000380871 TSHZ2Q9NRE2 1034 aa23.15■■□□□ 1.3
NKX3-1-201ENST00000380871 CTTNBP2Q8WZ74 1663 aa23.14■■□□□ 1.29
NKX3-1-201ENST00000380871 MRC2Q9UBG0 1479 aa23.12■■□□□ 1.29
NKX3-1-201ENST00000380871 ERCC6Q03468 1493 aa23.11■■□□□ 1.29
NKX3-1-201ENST00000380871 PPP1R15AO75807 674 aaPredicted RBP23.1■■□□□ 1.29
NKX3-1-201ENST00000380871 FGD6Q6ZV73 1430 aa23.08■■□□□ 1.29
NKX3-1-201ENST00000380871 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.28
NKX3-1-201ENST00000380871 SNAPC4Q5SXM2 1469 aa23.08■■□□□ 1.28
NKX3-1-201ENST00000380871 CHMP7Q8WUX9 453 aaPredicted RBP23.07■■□□□ 1.28
NKX3-1-201ENST00000380871 TRIM52Q96A61 297 aa23.07■■□□□ 1.28
NKX3-1-201ENST00000380871 FKBP8Q14318 412 aa23.04■■□□□ 1.28
NKX3-1-201ENST00000380871 NCOA2Q15596 1464 aa23.03■■□□□ 1.28
NKX3-1-201ENST00000380871 GRIN2BQ13224 1484 aa23.02■■□□□ 1.28
NKX3-1-201ENST00000380871 PTPRKQ15262 1439 aa23.01■■□□□ 1.27
NKX3-1-201ENST00000380871 CDK13Q14004 1512 aaKnown RBP22.96■■□□□ 1.27
NKX3-1-201ENST00000380871 MYOM3Q5VTT5 1437 aa22.95■■□□□ 1.26
NKX3-1-201ENST00000380871 TIMELESSQ9UNS1 1208 aa22.95■■□□□ 1.26
NKX3-1-201ENST00000380871 CCDC18Q5T9S5 1454 aa22.94■■□□□ 1.26
NKX3-1-201ENST00000380871 SAMD9Q5K651 1589 aa22.94■■□□□ 1.26
NKX3-1-201ENST00000380871 ZNF777Q9ULD5 760 aaPredicted RBP22.94■■□□□ 1.26
NKX3-1-201ENST00000380871 TONSLQ96HA7 1378 aa22.94■■□□□ 1.26
NKX3-1-201ENST00000380871 ANP32CO43423 234 aa22.92■■□□□ 1.26
NKX3-1-201ENST00000380871 IQGAP2Q13576 1575 aa22.92■■□□□ 1.26
NKX3-1-201ENST00000380871 FOXD1Q16676 465 aa22.92■■□□□ 1.26
NKX3-1-201ENST00000380871 IFT140Q96RY7 1462 aa22.91■■□□□ 1.26
NKX3-1-201ENST00000380871 PBRM1Q86U86 1689 aa22.91■■□□□ 1.26
NKX3-1-201ENST00000380871 ZNF644Q9H582 1327 aaPredicted RBP22.91■■□□□ 1.26
NKX3-1-201ENST00000380871 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.91■■□□□ 1.26
NKX3-1-201ENST00000380871 MAGI3Q5TCQ9 1506 aa22.9■■□□□ 1.26
NKX3-1-201ENST00000380871 ADAMTS12P58397 1594 aa22.88■■□□□ 1.25
NKX3-1-201ENST00000380871 LRRIQ1Q96JM4 1722 aa22.87■■□□□ 1.25
NKX3-1-201ENST00000380871 EPRSP07814 1512 aaKnown RBP22.86■■□□□ 1.25
NKX3-1-201ENST00000380871 HFM1A2PYH4 1435 aa22.86■■□□□ 1.25
NKX3-1-201ENST00000380871 CCER2I3L3R5 266 aa22.85■■□□□ 1.25
NKX3-1-201ENST00000380871 PTPN23Q9H3S7 1636 aa22.85■■□□□ 1.25
NKX3-1-201ENST00000380871 UACAQ9BZF9 1416 aa22.84■■□□□ 1.25
NKX3-1-201ENST00000380871 NAIPQ13075 1403 aa22.83■■□□□ 1.24
NKX3-1-201ENST00000380871 EHBP1L1Q8N3D4 1523 aa22.81■■□□□ 1.24
NKX3-1-201ENST00000380871 JPH4Q96JJ6 628 aa22.81■■□□□ 1.24
NKX3-1-201ENST00000380871 SUPT6HQ7KZ85 1726 aaKnown RBP22.8■■□□□ 1.24
NKX3-1-201ENST00000380871 CDK11AQ9UQ88 783 aaPredicted RBP22.8■■□□□ 1.24
NKX3-1-201ENST00000380871 NEFLP07196 543 aa22.79■■□□□ 1.24
NKX3-1-201ENST00000380871 THOC2Q8NI27 1593 aaKnown RBP22.78■■□□□ 1.24
NKX3-1-201ENST00000380871 GRIN2AQ12879 1464 aa22.78■■□□□ 1.24
NKX3-1-201ENST00000380871 WDR62O43379 1518 aa22.77■■□□□ 1.24
NKX3-1-201ENST00000380871 KIAA0586Q9BVV6 1533 aa22.77■■□□□ 1.24
NKX3-1-201ENST00000380871 KDM5BQ9UGL1 1544 aa22.76■■□□□ 1.23
NKX3-1-201ENST00000380871 HECW1Q76N89 1606 aa22.75■■□□□ 1.23
NKX3-1-201ENST00000380871 UGGT2Q9NYU1 1516 aa22.75■■□□□ 1.23
NKX3-1-201ENST00000380871 CFDP1Q9UEE9 299 aaPredicted RBP22.74■■□□□ 1.23
NKX3-1-201ENST00000380871 EIF4G3O43432 1585 aaKnown RBP22.74■■□□□ 1.23
NKX3-1-201ENST00000380871 ANP32EQ9BTT0 268 aa22.73■■□□□ 1.23
NKX3-1-201ENST00000380871 PRG4Q92954 1404 aaPredicted RBP22.72■■□□□ 1.23
NKX3-1-201ENST00000380871 MPHOSPH9Q99550 1183 aa22.72■■□□□ 1.23
NKX3-1-201ENST00000380871 DISP1Q96F81 1524 aa22.72■■□□□ 1.23
NKX3-1-201ENST00000380871 PLB1Q6P1J6 1458 aa22.71■■□□□ 1.23
NKX3-1-201ENST00000380871 IRX6P78412 446 aaPredicted RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms