RNA–Protein interactions for RNA: ENST00000380176.7

PDLIM5-204, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best)

Gene PDLIM5, Length 3,098 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-204ENST00000380176 LAMC3Q9Y6N6 1575 aa12.07□□□□□ -0.48
PDLIM5-204ENST00000380176 URB2Q14146 1524 aaKnown RBP12.05□□□□□ -0.48
PDLIM5-204ENST00000380176 ABCA10Q8WWZ4 1543 aa12.05□□□□□ -0.48
PDLIM5-204ENST00000380176 KIF21AQ7Z4S6 1674 aa12.01□□□□□ -0.49
PDLIM5-204ENST00000380176 PIAS4Q8N2W9 510 aaPredicted RBP12.01□□□□□ -0.49
PDLIM5-204ENST00000380176 WDR97A6NE52 1622 aa11.99□□□□□ -0.49
PDLIM5-204ENST00000380176 PRKCSHP14314 528 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-204ENST00000380176 PDS5BQ9NTI5 1447 aa11.98□□□□□ -0.49
PDLIM5-204ENST00000380176 P3H3Q8IVL6 736 aa11.96□□□□□ -0.49
PDLIM5-204ENST00000380176 CUL7Q14999 1698 aa11.96□□□□□ -0.5
PDLIM5-204ENST00000380176 TDRD9Q8NDG6 1382 aaKnown RBP11.96□□□□□ -0.5
PDLIM5-204ENST00000380176 ZBTB22O15209 634 aa11.94□□□□□ -0.5
PDLIM5-204ENST00000380176 ABCA5Q8WWZ7 1642 aa11.94□□□□□ -0.5
PDLIM5-204ENST00000380176 RRBP1Q9P2E9 1410 aaKnown RBP11.93□□□□□ -0.5
PDLIM5-204ENST00000380176 CTTNBP2Q8WZ74 1663 aa11.93□□□□□ -0.5
PDLIM5-204ENST00000380176 TIAM1Q13009 1591 aa11.93□□□□□ -0.5
PDLIM5-204ENST00000380176 PCF11O94913 1555 aaKnown RBP11.91□□□□□ -0.5
PDLIM5-204ENST00000380176 FHOD3Q2V2M9 1422 aa11.91□□□□□ -0.5
PDLIM5-204ENST00000380176 GAPVD1Q14C86 1478 aa11.91□□□□□ -0.5
PDLIM5-204ENST00000380176 TARBP1Q13395 1621 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-204ENST00000380176 MAP3K1Q13233 1512 aa11.89□□□□□ -0.51
PDLIM5-204ENST00000380176 NCBP3Q53F19 620 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-204ENST00000380176 CCNB3Q8WWL7 1395 aa11.88□□□□□ -0.51
PDLIM5-204ENST00000380176 LRRC9Q6ZRR7 1453 aa11.88□□□□□ -0.51
PDLIM5-204ENST00000380176 FHAD1B1AJZ9 1412 aa11.88□□□□□ -0.51
PDLIM5-204ENST00000380176 ATP1B4Q9UN42 357 aaPredicted RBP11.87□□□□□ -0.51
PDLIM5-204ENST00000380176 CFAP43Q8NDM7 1665 aa11.87□□□□□ -0.51
PDLIM5-204ENST00000380176 EFCAB5A4FU69 1503 aa11.86□□□□□ -0.51
PDLIM5-204ENST00000380176 ITGAEP38570 1179 aa11.86□□□□□ -0.51
PDLIM5-204ENST00000380176 DHX57Q6P158 1386 aaKnown RBP11.85□□□□□ -0.51
PDLIM5-204ENST00000380176 DIEXFQ68CQ4 756 aaKnown RBP11.85□□□□□ -0.51
PDLIM5-204ENST00000380176 PHLDB1Q86UU1 1377 aa11.84□□□□□ -0.51
PDLIM5-204ENST00000380176 FYCO1Q9BQS8 1478 aa11.82□□□□□ -0.52
PDLIM5-204ENST00000380176 PBRM1Q86U86 1689 aa11.82□□□□□ -0.52
PDLIM5-204ENST00000380176 CASKIN1Q8WXD9 1431 aa11.82□□□□□ -0.52
PDLIM5-204ENST00000380176 ZNF316A6NFI3 1004 aaPredicted RBP11.82□□□□□ -0.52
PDLIM5-204ENST00000380176 AQRO60306 1485 aaKnown RBP eCLIP11.82□□□□□ -0.52
PDLIM5-204ENST00000380176 MRC2Q9UBG0 1479 aa11.82□□□□□ -0.52
PDLIM5-204ENST00000380176 SAMD9Q5K651 1589 aa11.81□□□□□ -0.52
PDLIM5-204ENST00000380176 PPP4R3CPQ6ZMV5 832 aa11.8□□□□□ -0.52
PDLIM5-204ENST00000380176 LRRIQ1Q96JM4 1722 aa11.8□□□□□ -0.52
PDLIM5-204ENST00000380176 SNAPC4Q5SXM2 1469 aa11.8□□□□□ -0.52
PDLIM5-204ENST00000380176 FMN1Q68DA7 1419 aa11.78□□□□□ -0.52
PDLIM5-204ENST00000380176 FAM50AQ14320 339 aaKnown RBP11.77□□□□□ -0.53
PDLIM5-204ENST00000380176 CLSPNQ9HAW4 1339 aa11.76□□□□□ -0.53
PDLIM5-204ENST00000380176 ZNF608Q9ULD9 1512 aaPredicted RBP11.76□□□□□ -0.53
PDLIM5-204ENST00000380176 RAB3GAP2Q9H2M9 1393 aa11.76□□□□□ -0.53
PDLIM5-204ENST00000380176 ADAMTS12P58397 1594 aa11.75□□□□□ -0.53
PDLIM5-204ENST00000380176 WDR62O43379 1518 aa11.74□□□□□ -0.53
PDLIM5-204ENST00000380176 GRIN2BQ13224 1484 aa11.73□□□□□ -0.53
PDLIM5-204ENST00000380176 IFT140Q96RY7 1462 aa11.71□□□□□ -0.53
PDLIM5-204ENST00000380176 SETD5Q9C0A6 1442 aa11.71□□□□□ -0.53
PDLIM5-204ENST00000380176 IQGAP2Q13576 1575 aa11.71□□□□□ -0.53
PDLIM5-204ENST00000380176 MTUS2Q5JR59 1369 aa11.7□□□□□ -0.54
PDLIM5-204ENST00000380176 MAPKBP1O60336 1514 aa11.69□□□□□ -0.54
PDLIM5-204ENST00000380176 FGD6Q6ZV73 1430 aa11.68□□□□□ -0.54
PDLIM5-204ENST00000380176 ERCC6Q03468 1493 aa11.67□□□□□ -0.54
PDLIM5-204ENST00000380176 MAGI3Q5TCQ9 1506 aa11.67□□□□□ -0.54
PDLIM5-204ENST00000380176 EIF4G3O43432 1585 aaKnown RBP11.67□□□□□ -0.54
PDLIM5-204ENST00000380176 THOC2Q8NI27 1593 aaKnown RBP11.67□□□□□ -0.54
PDLIM5-204ENST00000380176 NCOA2Q15596 1464 aa11.66□□□□□ -0.54
PDLIM5-204ENST00000380176 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.66□□□□□ -0.54
PDLIM5-204ENST00000380176 SCAF1Q9H7N4 1312 aaKnown RBP11.65□□□□□ -0.54
PDLIM5-204ENST00000380176 SUPT6HQ7KZ85 1726 aaKnown RBP11.65□□□□□ -0.54
PDLIM5-204ENST00000380176 MIER1Q8N108 512 aa11.64□□□□□ -0.55
PDLIM5-204ENST00000380176 PTPRKQ15262 1439 aa11.64□□□□□ -0.55
PDLIM5-204ENST00000380176 EHBP1L1Q8N3D4 1523 aa11.64□□□□□ -0.55
PDLIM5-204ENST00000380176 UGGT2Q9NYU1 1516 aa11.63□□□□□ -0.55
PDLIM5-204ENST00000380176 HECW1Q76N89 1606 aa11.63□□□□□ -0.55
PDLIM5-204ENST00000380176 ARID3CA6NKF2 412 aa11.63□□□□□ -0.55
PDLIM5-204ENST00000380176 NEUROD1Q13562 356 aa11.63□□□□□ -0.55
PDLIM5-204ENST00000380176 MYOM3Q5VTT5 1437 aa11.62□□□□□ -0.55
PDLIM5-204ENST00000380176 CDK13Q14004 1512 aaKnown RBP11.62□□□□□ -0.55
PDLIM5-204ENST00000380176 EPRSP07814 1512 aaKnown RBP11.62□□□□□ -0.55
PDLIM5-204ENST00000380176 CCDC18Q5T9S5 1454 aa11.62□□□□□ -0.55
PDLIM5-204ENST00000380176 GRIN2AQ12879 1464 aa11.61□□□□□ -0.55
PDLIM5-204ENST00000380176 SIN3AQ96ST3 1273 aa11.61□□□□□ -0.55
PDLIM5-204ENST00000380176 ARHGEF11O15085 1522 aa11.61□□□□□ -0.55
PDLIM5-204ENST00000380176 DISP1Q96F81 1524 aa11.61□□□□□ -0.55
PDLIM5-204ENST00000380176 KIAA0586Q9BVV6 1533 aa11.61□□□□□ -0.55
PDLIM5-204ENST00000380176 ACIN1Q9UKV3 1341 aaKnown RBP11.6□□□□□ -0.55
PDLIM5-204ENST00000380176 KIAA0556O60303 1618 aa11.59□□□□□ -0.55
PDLIM5-204ENST00000380176 PTPN23Q9H3S7 1636 aa11.59□□□□□ -0.55
PDLIM5-204ENST00000380176 NPM3O75607 178 aaKnown RBP11.57□□□□□ -0.56
PDLIM5-204ENST00000380176 CEP170Q5SW79 1584 aa11.57□□□□□ -0.56
PDLIM5-204ENST00000380176 HFM1A2PYH4 1435 aa11.56□□□□□ -0.56
PDLIM5-204ENST00000380176 DAXXQ9UER7 740 aaPredicted RBP11.56□□□□□ -0.56
PDLIM5-204ENST00000380176 MAGI1Q96QZ7 1491 aaPredicted RBP11.56□□□□□ -0.56
PDLIM5-204ENST00000380176 CHMP7Q8WUX9 453 aaPredicted RBP11.56□□□□□ -0.56
PDLIM5-204ENST00000380176 FBLN2P98095 1184 aa11.55□□□□□ -0.56
PDLIM5-204ENST00000380176 MAPK8IP2Q13387 824 aaPredicted RBP11.55□□□□□ -0.56
PDLIM5-204ENST00000380176 YTHDC1Q96MU7 727 aaKnown RBP11.55□□□□□ -0.56
PDLIM5-204ENST00000380176 NAIPQ13075 1403 aa11.55□□□□□ -0.56
PDLIM5-204ENST00000380176 SYNJ2O15056 1496 aa11.54□□□□□ -0.56
PDLIM5-204ENST00000380176 NUP153P49790 1475 aaKnown RBP11.53□□□□□ -0.56
PDLIM5-204ENST00000380176 CENPBP07199 599 aaPredicted RBP11.53□□□□□ -0.56
PDLIM5-204ENST00000380176 TCOF1Q13428 1488 aaKnown RBP11.53□□□□□ -0.56
PDLIM5-204ENST00000380176 RAPGEF6Q8TEU7 1601 aa11.53□□□□□ -0.56
PDLIM5-204ENST00000380176 CHIC2Q9UKJ5 165 aa11.53□□□□□ -0.56
PDLIM5-204ENST00000380176 RRP7BPQ9NSQ0 103 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms