RNA–Protein interactions for RNA: ENST00000376656.8

TRIM39-201, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 2 BASIC

Gene TRIM39, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-201ENST00000376656 RBM19Q9Y4C8 960 aaKnown RBP23.42■■□□□ 1.34
TRIM39-201ENST00000376656 TIAM1Q13009 1591 aa23.42■■□□□ 1.34
TRIM39-201ENST00000376656 NEFLP07196 543 aa23.4■■□□□ 1.34
TRIM39-201ENST00000376656 HIRIP3Q9BW71 556 aaPredicted RBP23.4■■□□□ 1.34
TRIM39-201ENST00000376656 TRIM52Q96A61 297 aa23.39■■□□□ 1.34
TRIM39-201ENST00000376656 PHLDB1Q86UU1 1377 aa23.37■■□□□ 1.33
TRIM39-201ENST00000376656 MAP3K1Q13233 1512 aa23.35■■□□□ 1.33
TRIM39-201ENST00000376656 FAM50AQ14320 339 aaKnown RBP23.35■■□□□ 1.33
TRIM39-201ENST00000376656 LRRC9Q6ZRR7 1453 aa23.34■■□□□ 1.33
TRIM39-201ENST00000376656 CCER2I3L3R5 266 aa23.33■■□□□ 1.33
TRIM39-201ENST00000376656 ANP32CO43423 234 aa23.3■■□□□ 1.32
TRIM39-201ENST00000376656 TIMELESSQ9UNS1 1208 aa23.27■■□□□ 1.32
TRIM39-201ENST00000376656 IGF1RP08069 1367 aa23.25■■□□□ 1.31
TRIM39-201ENST00000376656 CFTRP13569 1480 aa23.21■■□□□ 1.31
TRIM39-201ENST00000376656 HMGXB3Q12766 1538 aa23.21■■□□□ 1.31
TRIM39-201ENST00000376656 MSH5O43196 834 aa23.19■■□□□ 1.3
TRIM39-201ENST00000376656 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
TRIM39-201ENST00000376656 CFAP43Q8NDM7 1665 aa23.18■■□□□ 1.3
TRIM39-201ENST00000376656 CARMIL1Q5VZK9 1371 aa23.16■■□□□ 1.3
TRIM39-201ENST00000376656 PCF11O94913 1555 aaKnown RBP23.16■■□□□ 1.3
TRIM39-201ENST00000376656 P3H3Q8IVL6 736 aa23.15■■□□□ 1.3
TRIM39-201ENST00000376656 ATP1B4Q9UN42 357 aaPredicted RBP23.15■■□□□ 1.3
TRIM39-201ENST00000376656 FHAD1B1AJZ9 1412 aa23.14■■□□□ 1.29
TRIM39-201ENST00000376656 TONSLQ96HA7 1378 aa23.1■■□□□ 1.29
TRIM39-201ENST00000376656 IRX6P78412 446 aaPredicted RBP23.07■■□□□ 1.28
TRIM39-201ENST00000376656 HNRNPUQ00839 825 aaKnown RBP eCLIP23.05■■□□□ 1.28
TRIM39-201ENST00000376656 FHOD3Q2V2M9 1422 aa23.03■■□□□ 1.28
TRIM39-201ENST00000376656 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.02■■□□□ 1.28
TRIM39-201ENST00000376656 FANCIQ9NVI1 1328 aa23.02■■□□□ 1.28
TRIM39-201ENST00000376656 FGD5Q6ZNL6 1462 aa23.01■■□□□ 1.27
TRIM39-201ENST00000376656 PRDM2Q13029 1718 aa23.01■■□□□ 1.27
TRIM39-201ENST00000376656 CCDC18Q5T9S5 1454 aa23■■□□□ 1.27
TRIM39-201ENST00000376656 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
TRIM39-201ENST00000376656 FYCO1Q9BQS8 1478 aa22.98■■□□□ 1.27
TRIM39-201ENST00000376656 FGD6Q6ZV73 1430 aa22.96■■□□□ 1.27
TRIM39-201ENST00000376656 UACAQ9BZF9 1416 aa22.95■■□□□ 1.26
TRIM39-201ENST00000376656 PTPRKQ15262 1439 aa22.94■■□□□ 1.26
TRIM39-201ENST00000376656 CASKIN1Q8WXD9 1431 aa22.94■■□□□ 1.26
TRIM39-201ENST00000376656 KDM5BQ9UGL1 1544 aa22.91■■□□□ 1.26
TRIM39-201ENST00000376656 HFM1A2PYH4 1435 aa22.91■■□□□ 1.26
TRIM39-201ENST00000376656 PTPN23Q9H3S7 1636 aa22.91■■□□□ 1.26
TRIM39-201ENST00000376656 ERICH6Q7L0X2 663 aa22.91■■□□□ 1.26
TRIM39-201ENST00000376656 AQRO60306 1485 aaKnown RBP eCLIP22.88■■□□□ 1.251e-6■■■■■ 29.2
TRIM39-201ENST00000376656 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
TRIM39-201ENST00000376656 EFCAB5A4FU69 1503 aa22.86■■□□□ 1.25
TRIM39-201ENST00000376656 NAIPQ13075 1403 aa22.85■■□□□ 1.25
TRIM39-201ENST00000376656 HSPA5P11021 654 aaKnown RBP22.84■■□□□ 1.25
TRIM39-201ENST00000376656 CADPSQ9ULU8 1353 aa22.84■■□□□ 1.25
TRIM39-201ENST00000376656 CCDC184Q52MB2 194 aa22.83■■□□□ 1.25
TRIM39-201ENST00000376656 PPP4R2Q9NY27 417 aa22.83■■□□□ 1.25
TRIM39-201ENST00000376656 MTUS2Q5JR59 1369 aa22.82■■□□□ 1.24
TRIM39-201ENST00000376656 ERICH6BQ5W0A0 696 aa22.81■■□□□ 1.24
TRIM39-201ENST00000376656 SNAPC4Q5SXM2 1469 aa22.78■■□□□ 1.24
TRIM39-201ENST00000376656 FMN1Q68DA7 1419 aa22.77■■□□□ 1.24
TRIM39-201ENST00000376656 RAD54L2Q9Y4B4 1467 aa22.76■■□□□ 1.23
TRIM39-201ENST00000376656 CTTNBP2Q8WZ74 1663 aa22.75■■□□□ 1.23
TRIM39-201ENST00000376656 NCOA2Q15596 1464 aa22.75■■□□□ 1.23
TRIM39-201ENST00000376656 B4GALNT3Q6L9W6 998 aa22.74■■□□□ 1.23
TRIM39-201ENST00000376656 CNTLNQ9NXG0 1405 aa22.74■■□□□ 1.23
TRIM39-201ENST00000376656 MYOM3Q5VTT5 1437 aa22.73■■□□□ 1.23
TRIM39-201ENST00000376656 LRRIQ1Q96JM4 1722 aa22.72■■□□□ 1.23
TRIM39-201ENST00000376656 EIF4G2P78344 907 aaKnown RBP eCLIP22.72■■□□□ 1.23
TRIM39-201ENST00000376656 FAM9BQ8IZU0 186 aa22.72■■□□□ 1.23
TRIM39-201ENST00000376656 RRP7BPQ9NSQ0 103 aa22.7■■□□□ 1.22
TRIM39-201ENST00000376656 DENND4BO75064 1496 aaPredicted RBP22.69■■□□□ 1.22
TRIM39-201ENST00000376656 C11orf95C9JLR9 678 aaPredicted RBP22.69■■□□□ 1.22
TRIM39-201ENST00000376656 ABCA10Q8WWZ4 1543 aa22.68■■□□□ 1.22
TRIM39-201ENST00000376656 PRKRIP1Q9H875 184 aaPredicted RBP22.68■■□□□ 1.22
TRIM39-201ENST00000376656 CC2D2AQ9P2K1 1620 aa22.67■■□□□ 1.22
TRIM39-201ENST00000376656 CUL7Q14999 1698 aa22.66■■□□□ 1.22
TRIM39-201ENST00000376656 MRS2Q9HD23 443 aa22.66■■□□□ 1.22
TRIM39-201ENST00000376656 CHIC2Q9UKJ5 165 aa22.66■■□□□ 1.22
TRIM39-201ENST00000376656 FANCD2Q9BXW9 1451 aa22.66■■□□□ 1.22
TRIM39-201ENST00000376656 ZBED9Q6R2W3 1325 aa22.65■■□□□ 1.22
TRIM39-201ENST00000376656 SUPT6HQ7KZ85 1726 aaKnown RBP22.64■■□□□ 1.22
TRIM39-201ENST00000376656 POLA1P09884 1462 aaPredicted RBP22.63■■□□□ 1.21
TRIM39-201ENST00000376656 CCDC7Q96M83 1385 aa22.63■■□□□ 1.21
TRIM39-201ENST00000376656 DEKP35659 375 aaKnown RBP22.62■■□□□ 1.21
TRIM39-201ENST00000376656 MYT1LQ9UL68 1186 aa22.62■■□□□ 1.21
TRIM39-201ENST00000376656 HECW1Q76N89 1606 aa22.62■■□□□ 1.21
TRIM39-201ENST00000376656 NCOA1Q15788 1441 aa22.62■■□□□ 1.21
TRIM39-201ENST00000376656 GRIN2BQ13224 1484 aa22.62■■□□□ 1.21
TRIM39-201ENST00000376656 DNMBPQ6XZF7 1577 aa22.61■■□□□ 1.21
TRIM39-201ENST00000376656 L3MBTL2Q969R5 705 aa22.61■■□□□ 1.21
TRIM39-201ENST00000376656 KDM6BO15054 1643 aa22.6■■□□□ 1.21
TRIM39-201ENST00000376656 EHBP1L1Q8N3D4 1523 aa22.59■■□□□ 1.21
TRIM39-201ENST00000376656 GCC2Q8IWJ2 1684 aa22.59■■□□□ 1.21
TRIM39-201ENST00000376656 SAMD9Q5K651 1589 aa22.59■■□□□ 1.21
TRIM39-201ENST00000376656 UGGT2Q9NYU1 1516 aa22.58■■□□□ 1.21
TRIM39-201ENST00000376656 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
TRIM39-201ENST00000376656 FOXD1Q16676 465 aa22.57■■□□□ 1.2
TRIM39-201ENST00000376656 NOP58Q9Y2X3 529 aaKnown RBP22.56■■□□□ 1.2
TRIM39-201ENST00000376656 MPHOSPH9Q99550 1183 aa22.56■■□□□ 1.2
TRIM39-201ENST00000376656 MAGI3Q5TCQ9 1506 aa22.55■■□□□ 1.2
TRIM39-201ENST00000376656 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
TRIM39-201ENST00000376656 PAK3O75914 559 aaPredicted RBP22.54■■□□□ 1.2
TRIM39-201ENST00000376656 THOC2Q8NI27 1593 aaKnown RBP22.53■■□□□ 1.2
TRIM39-201ENST00000376656 NBPF8Q3BBV2 869 aa22.52■■□□□ 1.2
TRIM39-201ENST00000376656 TCOF1Q13428 1488 aaKnown RBP22.51■■□□□ 1.19
TRIM39-201ENST00000376656 NBR1Q14596 966 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 474.8 ms