RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 SHROOM2Q13796 1616 aa24.74■■□□□ 1.55
COL9A1-204ENST00000370496 PRXQ9BXM0 1461 aa24.74■■□□□ 1.55
COL9A1-204ENST00000370496 CTTNBP2Q8WZ74 1663 aa24.7■■□□□ 1.54
COL9A1-204ENST00000370496 FAM9AQ8IZU1 332 aaPredicted RBP24.69■■□□□ 1.54
COL9A1-204ENST00000370496 KIAA0586Q9BVV6 1533 aa24.69■■□□□ 1.54
COL9A1-204ENST00000370496 CSRNP3Q8WYN3 585 aa24.68■■□□□ 1.54
COL9A1-204ENST00000370496 IQGAP2Q13576 1575 aa24.67■■□□□ 1.54
COL9A1-204ENST00000370496 KIF21BO75037 1637 aa24.63■■□□□ 1.53
COL9A1-204ENST00000370496 ARAP1Q96P48 1450 aa24.62■■□□□ 1.53
COL9A1-204ENST00000370496 ERCC6L2Q5T890 1561 aa24.61■■□□□ 1.53
COL9A1-204ENST00000370496 PRG4Q92954 1404 aaPredicted RBP24.58■■□□□ 1.53
COL9A1-204ENST00000370496 JPH4Q96JJ6 628 aa24.55■■□□□ 1.52
COL9A1-204ENST00000370496 UGGT2Q9NYU1 1516 aa24.48■■□□□ 1.51
COL9A1-204ENST00000370496 CYB5RLQ6IPT4 315 aa24.48■■□□□ 1.51
COL9A1-204ENST00000370496 GOLGA3Q08378 1498 aa24.47■■□□□ 1.51
COL9A1-204ENST00000370496 CARMIL2Q6F5E8 1435 aa24.45■■□□□ 1.5
COL9A1-204ENST00000370496 KIAA0556O60303 1618 aa24.43■■□□□ 1.5
COL9A1-204ENST00000370496 DISP1Q96F81 1524 aa24.41■■□□□ 1.5
COL9A1-204ENST00000370496 EHMT2Q96KQ7 1210 aa24.4■■□□□ 1.5
COL9A1-204ENST00000370496 TNIKQ9UKE5 1360 aa24.33■■□□□ 1.49
COL9A1-204ENST00000370496 SAMD9Q5K651 1589 aa24.31■■□□□ 1.48
COL9A1-204ENST00000370496 UBTFP17480 764 aaKnown RBP24.31■■□□□ 1.48
COL9A1-204ENST00000370496 TTBK1Q5TCY1 1321 aaPredicted RBP24.29■■□□□ 1.48
COL9A1-204ENST00000370496 PTPRGP23470 1445 aa24.28■■□□□ 1.48
COL9A1-204ENST00000370496 EFCAB5A4FU69 1503 aa24.25■■□□□ 1.47
COL9A1-204ENST00000370496 ADCY10Q96PN6 1610 aa24.25■■□□□ 1.47
COL9A1-204ENST00000370496 RANGAP1P46060 587 aaPredicted RBP24.24■■□□□ 1.47
COL9A1-204ENST00000370496 ABCC2Q92887 1545 aa24.16■■□□□ 1.46
COL9A1-204ENST00000370496 P3H3Q8IVL6 736 aa24.16■■□□□ 1.46
COL9A1-204ENST00000370496 UACAQ9BZF9 1416 aa24.15■■□□□ 1.46
COL9A1-204ENST00000370496 FHOD3Q2V2M9 1422 aa24.14■■□□□ 1.46
COL9A1-204ENST00000370496 UHRF1BP1LA0JNW5 1464 aa24.13■■□□□ 1.45
COL9A1-204ENST00000370496 ABCA8O94911 1581 aa24.11■■□□□ 1.45
COL9A1-204ENST00000370496 PLB1Q6P1J6 1458 aa24.11■■□□□ 1.45
COL9A1-204ENST00000370496 ARHGAP35Q9NRY4 1499 aa24.09■■□□□ 1.45
COL9A1-204ENST00000370496 NPM1P06748 294 aaKnown RBP eCLIP24.07■■□□□ 1.44
COL9A1-204ENST00000370496 RAPGEF6Q8TEU7 1601 aa24.06■■□□□ 1.44
COL9A1-204ENST00000370496 MAPKBP1O60336 1514 aa24.05■■□□□ 1.44
COL9A1-204ENST00000370496 ZCCHC11Q5TAX3 1644 aaKnown RBP24.05■■□□□ 1.44
COL9A1-204ENST00000370496 KDM5BQ9UGL1 1544 aa24.01■■□□□ 1.43
COL9A1-204ENST00000370496 CLIP1P30622 1438 aa24■■□□□ 1.43
COL9A1-204ENST00000370496 TRHP20396 242 aaPredicted RBP23.97■■□□□ 1.43
COL9A1-204ENST00000370496 FMN1Q68DA7 1419 aa23.97■■□□□ 1.43
COL9A1-204ENST00000370496 CEP162Q5TB80 1403 aa23.95■■□□□ 1.42
COL9A1-204ENST00000370496 LOC105371045A0A1W2PR82 267 aa23.93■■□□□ 1.42
COL9A1-204ENST00000370496 HECW1Q76N89 1606 aa23.93■■□□□ 1.42
COL9A1-204ENST00000370496 KIF13AQ9H1H9 1805 aa23.92■■□□□ 1.42
COL9A1-204ENST00000370496 ASXL2Q76L83 1435 aa23.92■■□□□ 1.42
COL9A1-204ENST00000370496 NUP153P49790 1475 aaKnown RBP23.92■■□□□ 1.42
COL9A1-204ENST00000370496 DIP2BQ9P265 1576 aa23.92■■□□□ 1.42
COL9A1-204ENST00000370496 PCF11O94913 1555 aaKnown RBP23.89■■□□□ 1.41
COL9A1-204ENST00000370496 ABCC10Q5T3U5 1492 aa23.88■■□□□ 1.41
COL9A1-204ENST00000370496 ARID3CA6NKF2 412 aa23.88■■□□□ 1.41
COL9A1-204ENST00000370496 WDR7Q9Y4E6 1490 aa23.85■■□□□ 1.41
COL9A1-204ENST00000370496 ATP10BO94823 1461 aa23.85■■□□□ 1.41
COL9A1-204ENST00000370496 CDK13Q14004 1512 aaKnown RBP23.8■■□□□ 1.4
COL9A1-204ENST00000370496 FYCO1Q9BQS8 1478 aa23.8■■□□□ 1.4
COL9A1-204ENST00000370496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.79■■□□□ 1.4
COL9A1-204ENST00000370496 HNRNPUL2Q1KMD3 747 aaKnown RBP23.79■■□□□ 1.4
COL9A1-204ENST00000370496 ATP1B4Q9UN42 357 aaPredicted RBP23.79■■□□□ 1.4
COL9A1-204ENST00000370496 LRRIQ1Q96JM4 1722 aa23.79■■□□□ 1.4
COL9A1-204ENST00000370496 CASKIN1Q8WXD9 1431 aa23.79■■□□□ 1.4
COL9A1-204ENST00000370496 EPRSP07814 1512 aaKnown RBP23.78■■□□□ 1.4
COL9A1-204ENST00000370496 FAM69CQ0P6D2 419 aa23.78■■□□□ 1.4
COL9A1-204ENST00000370496 GLI2P10070 1586 aa23.77■■□□□ 1.4
COL9A1-204ENST00000370496 TSPOAP1O95153 1857 aa23.73■■□□□ 1.39
COL9A1-204ENST00000370496 CCDC18Q5T9S5 1454 aa23.73■■□□□ 1.39
COL9A1-204ENST00000370496 MAP3K4Q9Y6R4 1608 aa23.71■■□□□ 1.39
COL9A1-204ENST00000370496 CFAP43Q8NDM7 1665 aa23.69■■□□□ 1.38
COL9A1-204ENST00000370496 KCNH8Q96L42 1107 aa23.65■■□□□ 1.38
COL9A1-204ENST00000370496 VPS8Q8N3P4 1428 aa23.65■■□□□ 1.38
COL9A1-204ENST00000370496 PPRC1Q5VV67 1664 aaKnown RBP23.64■■□□□ 1.37
COL9A1-204ENST00000370496 ABCA9Q8IUA7 1624 aa23.64■■□□□ 1.37
COL9A1-204ENST00000370496 PLEKHD1A6NEE1 506 aa23.63■■□□□ 1.37
COL9A1-204ENST00000370496 KIF14Q15058 1648 aa23.61■■□□□ 1.37
COL9A1-204ENST00000370496 CDK11AQ9UQ88 783 aaPredicted RBP23.61■■□□□ 1.37
COL9A1-204ENST00000370496 TTC37Q6PGP7 1564 aa23.58■■□□□ 1.36
COL9A1-204ENST00000370496 TEX14Q8IWB6 1497 aa23.57■■□□□ 1.36
COL9A1-204ENST00000370496 TROQ12816 1431 aaPredicted RBP23.57■■□□□ 1.36
COL9A1-204ENST00000370496 CD109Q6YHK3 1445 aa23.57■■□□□ 1.36
COL9A1-204ENST00000370496 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.55■■□□□ 1.36
COL9A1-204ENST00000370496 MAGI3Q5TCQ9 1506 aa23.54■■□□□ 1.36
COL9A1-204ENST00000370496 KDM6BO15054 1643 aa23.51■■□□□ 1.35
COL9A1-204ENST00000370496 TIAM1Q13009 1591 aa23.51■■□□□ 1.35
COL9A1-204ENST00000370496 MYO5CQ9NQX4 1742 aa23.5■■□□□ 1.35
COL9A1-204ENST00000370496 EHBP1L1Q8N3D4 1523 aa23.49■■□□□ 1.35
COL9A1-204ENST00000370496 CFAP74Q9C0B2 1584 aa23.47■■□□□ 1.35
COL9A1-204ENST00000370496 MTUS2Q5JR59 1369 aa23.46■■□□□ 1.35
COL9A1-204ENST00000370496 PREX2Q70Z35 1606 aa23.41■■□□□ 1.34
COL9A1-204ENST00000370496 MAP3K1Q13233 1512 aa23.41■■□□□ 1.34
COL9A1-204ENST00000370496 NEO1Q92859 1461 aa23.39■■□□□ 1.33
COL9A1-204ENST00000370496 CDC42BPAQ5VT25 1732 aa23.39■■□□□ 1.33
COL9A1-204ENST00000370496 SUPT6HQ7KZ85 1726 aaKnown RBP23.39■■□□□ 1.33
COL9A1-204ENST00000370496 ARAP3Q8WWN8 1544 aa23.38■■□□□ 1.33
COL9A1-204ENST00000370496 FANCAO15360 1455 aa23.38■■□□□ 1.33
COL9A1-204ENST00000370496 ARHGAP5Q13017 1502 aa23.37■■□□□ 1.33
COL9A1-204ENST00000370496 PLCH2O75038 1416 aa23.36■■□□□ 1.33
COL9A1-204ENST00000370496 CDC42BPBQ9Y5S2 1711 aa23.35■■□□□ 1.33
COL9A1-204ENST00000370496 LRRC9Q6ZRR7 1453 aa23.35■■□□□ 1.33
COL9A1-204ENST00000370496 APLP2Q06481 763 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms