RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 RANGAP1P46060 587 aaPredicted RBP37.88■■■■□ 3.65
SNX3-203ENST00000368979 ARHGAP35Q9NRY4 1499 aa37.88■■■■□ 3.65
SNX3-203ENST00000368979 ARAP1Q96P48 1450 aa37.84■■■■□ 3.65
SNX3-203ENST00000368979 CHMP7Q8WUX9 453 aaPredicted RBP37.82■■■■□ 3.64
SNX3-203ENST00000368979 IQGAP2Q13576 1575 aa37.79■■■■□ 3.64
SNX3-203ENST00000368979 EFCAB5A4FU69 1503 aa37.78■■■■□ 3.64
SNX3-203ENST00000368979 VPS8Q8N3P4 1428 aa37.77■■■■□ 3.64
SNX3-203ENST00000368979 CEP170Q5SW79 1584 aa37.76■■■■□ 3.64
SNX3-203ENST00000368979 KIAA0586Q9BVV6 1533 aa37.73■■■■□ 3.63
SNX3-203ENST00000368979 NUP160Q12769 1436 aa37.73■■■■□ 3.63
SNX3-203ENST00000368979 SAMD9Q5K651 1589 aa37.71■■■■□ 3.63
SNX3-203ENST00000368979 CHD1O14646 1710 aa37.7■■■■□ 3.63
SNX3-203ENST00000368979 FBLN2P98095 1184 aa37.69■■■■□ 3.62
SNX3-203ENST00000368979 UGGT2Q9NYU1 1516 aa37.62■■■■□ 3.61
SNX3-203ENST00000368979 FHOD3Q2V2M9 1422 aa37.55■■■■□ 3.6
SNX3-203ENST00000368979 P3H3Q8IVL6 736 aa37.47■■■■□ 3.59
SNX3-203ENST00000368979 DISP1Q96F81 1524 aa37.42■■■■□ 3.58
SNX3-203ENST00000368979 KIAA0556O60303 1618 aa37.42■■■■□ 3.58
SNX3-203ENST00000368979 FMN1Q68DA7 1419 aa37.38■■■■□ 3.57
SNX3-203ENST00000368979 PCF11O94913 1555 aaKnown RBP37.37■■■■□ 3.57
SNX3-203ENST00000368979 JPH4Q96JJ6 628 aa37.31■■■■□ 3.56
SNX3-203ENST00000368979 CLASP1Q7Z460 1538 aa37.31■■■■□ 3.56
SNX3-203ENST00000368979 FYCO1Q9BQS8 1478 aa37.3■■■■□ 3.56
SNX3-203ENST00000368979 SHROOM2Q13796 1616 aa37.29■■■■□ 3.56
SNX3-203ENST00000368979 CASKIN1Q8WXD9 1431 aa37.29■■■■□ 3.56
SNX3-203ENST00000368979 APLP2Q06481 763 aa37.24■■■■□ 3.55
SNX3-203ENST00000368979 PPARGC1BQ86YN6 1023 aaKnown RBP37.24■■■■□ 3.55
SNX3-203ENST00000368979 CARMIL2Q6F5E8 1435 aa37.23■■■■□ 3.55
SNX3-203ENST00000368979 MAP3K1Q13233 1512 aa37.22■■■■□ 3.55
SNX3-203ENST00000368979 TIAM1Q13009 1591 aa37.16■■■■□ 3.54
SNX3-203ENST00000368979 CFAP43Q8NDM7 1665 aa37.16■■■■□ 3.54
SNX3-203ENST00000368979 PRG4Q92954 1404 aaPredicted RBP37.15■■■■□ 3.54
SNX3-203ENST00000368979 TRIM26Q12899 539 aaPredicted RBP37.1■■■■□ 3.53
SNX3-203ENST00000368979 LRRIQ1Q96JM4 1722 aa37.08■■■■□ 3.53
SNX3-203ENST00000368979 HECW1Q76N89 1606 aa37.08■■■■□ 3.53
SNX3-203ENST00000368979 RAPGEF6Q8TEU7 1601 aa37.01■■■■□ 3.52
SNX3-203ENST00000368979 KANK4Q5T7N3 995 aaPredicted RBP37■■■■□ 3.51
SNX3-203ENST00000368979 TTBK1Q5TCY1 1321 aaPredicted RBP37■■■■□ 3.51
SNX3-203ENST00000368979 ATP1B4Q9UN42 357 aaPredicted RBP37■■■■□ 3.51
SNX3-203ENST00000368979 ERCC6L2Q5T890 1561 aa36.98■■■■□ 3.51
SNX3-203ENST00000368979 CCDC18Q5T9S5 1454 aa36.96■■■■□ 3.51
SNX3-203ENST00000368979 LRRC9Q6ZRR7 1453 aa36.96■■■■□ 3.51
SNX3-203ENST00000368979 OSCARQ8IYS5 282 aa36.93■■■■□ 3.5
SNX3-203ENST00000368979 PCGF6Q9BYE7 350 aa36.93■■■■□ 3.5
SNX3-203ENST00000368979 ABCA8O94911 1581 aa36.91■■■■□ 3.5
SNX3-203ENST00000368979 PLB1Q6P1J6 1458 aa36.91■■■■□ 3.5
SNX3-203ENST00000368979 EPRSP07814 1512 aaKnown RBP36.91■■■■□ 3.5
SNX3-203ENST00000368979 NUP153P49790 1475 aaKnown RBP36.89■■■■□ 3.5
SNX3-203ENST00000368979 PTPRGP23470 1445 aa36.87■■■■□ 3.49
SNX3-203ENST00000368979 CDK13Q14004 1512 aaKnown RBP36.82■■■■□ 3.48
SNX3-203ENST00000368979 EHBP1L1Q8N3D4 1523 aa36.76■■■■□ 3.48
SNX3-203ENST00000368979 MAGI3Q5TCQ9 1506 aa36.74■■■■□ 3.47
SNX3-203ENST00000368979 MTUS2Q5JR59 1369 aa36.72■■■■□ 3.47
SNX3-203ENST00000368979 UACAQ9BZF9 1416 aa36.7■■■■□ 3.47
SNX3-203ENST00000368979 ARID3CA6NKF2 412 aa36.64■■■■□ 3.46
SNX3-203ENST00000368979 ABCC2Q92887 1545 aa36.63■■■■□ 3.46
SNX3-203ENST00000368979 SUPT6HQ7KZ85 1726 aaKnown RBP36.63■■■■□ 3.45
SNX3-203ENST00000368979 RRBP1Q9P2E9 1410 aaKnown RBP36.6■■■■□ 3.45
SNX3-203ENST00000368979 ATP10BO94823 1461 aa36.6■■■■□ 3.45
SNX3-203ENST00000368979 PHLDB1Q86UU1 1377 aa36.58■■■■□ 3.45
SNX3-203ENST00000368979 UHRF1BP1LA0JNW5 1464 aa36.58■■■■□ 3.45
SNX3-203ENST00000368979 ARHGEF11O15085 1522 aa36.57■■■■□ 3.45
SNX3-203ENST00000368979 NCOA2Q15596 1464 aa36.55■■■■□ 3.44
SNX3-203ENST00000368979 CDK11AQ9UQ88 783 aaPredicted RBP36.52■■■■□ 3.44
SNX3-203ENST00000368979 TROQ12816 1431 aaPredicted RBP36.5■■■■□ 3.43
SNX3-203ENST00000368979 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.49■■■■□ 3.43
SNX3-203ENST00000368979 HNRNPUL2Q1KMD3 747 aaKnown RBP36.49■■■■□ 3.43
SNX3-203ENST00000368979 ADCY10Q96PN6 1610 aa36.46■■■■□ 3.43
SNX3-203ENST00000368979 CCNB3Q8WWL7 1395 aa36.45■■■■□ 3.43
SNX3-203ENST00000368979 KDM5BQ9UGL1 1544 aa36.42■■■■□ 3.42
SNX3-203ENST00000368979 ZCCHC11Q5TAX3 1644 aaKnown RBP36.39■■■■□ 3.42
SNX3-203ENST00000368979 MYOM3Q5VTT5 1437 aa36.39■■■■□ 3.42
SNX3-203ENST00000368979 FGD6Q6ZV73 1430 aa36.36■■■■□ 3.41
SNX3-203ENST00000368979 KIF14Q15058 1648 aa36.36■■■■□ 3.41
SNX3-203ENST00000368979 PLEKHD1A6NEE1 506 aa36.34■■■■□ 3.41
SNX3-203ENST00000368979 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.29■■■■□ 3.4
SNX3-203ENST00000368979 RIMBP3CA6NJZ7 1639 aa36.27■■■■□ 3.4
SNX3-203ENST00000368979 RIMBP3BA6NNM3 1639 aa36.27■■■■□ 3.4
SNX3-203ENST00000368979 RIMBP3Q9UFD9 1639 aa36.27■■■■□ 3.4
SNX3-203ENST00000368979 ABCC10Q5T3U5 1492 aa36.23■■■■□ 3.39
SNX3-203ENST00000368979 MIA2Q96PC5 1412 aa36.23■■■■□ 3.39
SNX3-203ENST00000368979 PTPN23Q9H3S7 1636 aa36.22■■■■□ 3.39
SNX3-203ENST00000368979 ITSN2Q9NZM3 1697 aa36.21■■■■□ 3.39
SNX3-203ENST00000368979 TCOF1Q13428 1488 aaKnown RBP36.2■■■■□ 3.39
SNX3-203ENST00000368979 GPATCH8Q9UKJ3 1502 aaKnown RBP36.15■■■■□ 3.38
SNX3-203ENST00000368979 FAM50AQ14320 339 aaKnown RBP36.15■■■■□ 3.38
SNX3-203ENST00000368979 CDC42BPAQ5VT25 1732 aa36.12■■■■□ 3.37
SNX3-203ENST00000368979 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.08■■■■□ 3.378e-7■□□□□ 8.5
SNX3-203ENST00000368979 WDR7Q9Y4E6 1490 aa36.06■■■■□ 3.36
SNX3-203ENST00000368979 TTC37Q6PGP7 1564 aa36.06■■■■□ 3.36
SNX3-203ENST00000368979 PREX2Q70Z35 1606 aa36.02■■■■□ 3.36
SNX3-203ENST00000368979 ITGAEP38570 1179 aa35.99■■■■□ 3.35
SNX3-203ENST00000368979 ASXL2Q76L83 1435 aa35.99■■■■□ 3.35
SNX3-203ENST00000368979 CFDP1Q9UEE9 299 aaPredicted RBP35.97■■■■□ 3.35
SNX3-203ENST00000368979 CAMSAP2Q08AD1 1489 aa35.96■■■■□ 3.35
SNX3-203ENST00000368979 NPM1P06748 294 aaKnown RBP eCLIP35.96■■■■□ 3.35
SNX3-203ENST00000368979 CDC42BPBQ9Y5S2 1711 aa35.96■■■■□ 3.35
SNX3-203ENST00000368979 MYO5CQ9NQX4 1742 aa35.95■■■■□ 3.35
SNX3-203ENST00000368979 CYB5RLQ6IPT4 315 aa35.94■■■■□ 3.34
SNX3-203ENST00000368979 KCNH8Q96L42 1107 aa35.93■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms