RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 ADAMTS12P58397 1594 aa21.59■■□□□ 1.05
USF1-202ENST00000368020 SYNJ2O15056 1496 aa21.54■■□□□ 1.04
USF1-202ENST00000368020 PPARGC1BQ86YN6 1023 aaKnown RBP21.51■■□□□ 1.03
USF1-202ENST00000368020 CHMP7Q8WUX9 453 aaPredicted RBP21.48■■□□□ 1.03
USF1-202ENST00000368020 GRIN2AQ12879 1464 aa21.47■■□□□ 1.03
USF1-202ENST00000368020 APLP2Q06481 763 aa21.45■■□□□ 1.02
USF1-202ENST00000368020 FBLN2P98095 1184 aa21.4■■□□□ 1.02
USF1-202ENST00000368020 ARAP1Q96P48 1450 aa21.39■■□□□ 1.01
USF1-202ENST00000368020 NUP160Q12769 1436 aa21.37■■□□□ 1.01
USF1-202ENST00000368020 CHD1O14646 1710 aa21.37■■□□□ 1.01
USF1-202ENST00000368020 CTTNBP2Q8WZ74 1663 aa21.33■■□□□ 1.01
USF1-202ENST00000368020 KIAA0586Q9BVV6 1533 aa21.32■■□□□ 1
USF1-202ENST00000368020 CEP170Q5SW79 1584 aa21.3■■□□□ 1
USF1-202ENST00000368020 ARHGAP35Q9NRY4 1499 aa21.29■■□□□ 1
USF1-202ENST00000368020 IQGAP2Q13576 1575 aa21.26■□□□□ 0.99
USF1-202ENST00000368020 CCER1Q8TC90 406 aaPredicted RBP21.25■□□□□ 0.99
USF1-202ENST00000368020 TTBK1Q5TCY1 1321 aaPredicted RBP21.24■□□□□ 0.99
USF1-202ENST00000368020 RANGAP1P46060 587 aaPredicted RBP21.23■□□□□ 0.99
USF1-202ENST00000368020 MAP3K1Q13233 1512 aa21.22■□□□□ 0.99
USF1-202ENST00000368020 OSCARQ8IYS5 282 aa21.21■□□□□ 0.99
USF1-202ENST00000368020 EFCAB5A4FU69 1503 aa21.2■□□□□ 0.98
USF1-202ENST00000368020 UGGT2Q9NYU1 1516 aa21.18■□□□□ 0.98
USF1-202ENST00000368020 CLASP1Q7Z460 1538 aa21.17■□□□□ 0.98
USF1-202ENST00000368020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.17■□□□□ 0.98
USF1-202ENST00000368020 JPH4Q96JJ6 628 aa21.16■□□□□ 0.98
USF1-202ENST00000368020 SAMD9Q5K651 1589 aa21.12■□□□□ 0.97
USF1-202ENST00000368020 SHROOM2Q13796 1616 aa21.12■□□□□ 0.97
USF1-202ENST00000368020 DNAJC5Q9H3Z4 198 aa21.09■□□□□ 0.97
USF1-202ENST00000368020 TIAM1Q13009 1591 aa21.09■□□□□ 0.97
USF1-202ENST00000368020 DISP1Q96F81 1524 aa21.07■□□□□ 0.96
USF1-202ENST00000368020 CARMIL2Q6F5E8 1435 aa21.06■□□□□ 0.96
USF1-202ENST00000368020 RRBP1Q9P2E9 1410 aaKnown RBP21.06■□□□□ 0.96
USF1-202ENST00000368020 CFAP43Q8NDM7 1665 aa21.06■□□□□ 0.96
USF1-202ENST00000368020 PRG4Q92954 1404 aaPredicted RBP21.04■□□□□ 0.96
USF1-202ENST00000368020 KIAA0556O60303 1618 aa21.03■□□□□ 0.96
USF1-202ENST00000368020 FYCO1Q9BQS8 1478 aa21.02■□□□□ 0.96
USF1-202ENST00000368020 KANK4Q5T7N3 995 aaPredicted RBP20.99■□□□□ 0.95
USF1-202ENST00000368020 FHOD3Q2V2M9 1422 aa20.99■□□□□ 0.95
USF1-202ENST00000368020 PCF11O94913 1555 aaKnown RBP20.99■□□□□ 0.95
USF1-202ENST00000368020 FMN1Q68DA7 1419 aa20.98■□□□□ 0.95
USF1-202ENST00000368020 P3H3Q8IVL6 736 aa20.98■□□□□ 0.95
USF1-202ENST00000368020 HNRNPUL2Q1KMD3 747 aaKnown RBP20.98■□□□□ 0.95
USF1-202ENST00000368020 CASKIN1Q8WXD9 1431 aa20.96■□□□□ 0.95
USF1-202ENST00000368020 LRRC9Q6ZRR7 1453 aa20.96■□□□□ 0.95
USF1-202ENST00000368020 CCNB3Q8WWL7 1395 aa20.94■□□□□ 0.94
USF1-202ENST00000368020 CLSPNQ9HAW4 1339 aa20.92■□□□□ 0.94
USF1-202ENST00000368020 ERCC6L2Q5T890 1561 aa20.9■□□□□ 0.94
USF1-202ENST00000368020 PTPRGP23470 1445 aa20.88■□□□□ 0.93
USF1-202ENST00000368020 ARHGEF11O15085 1522 aa20.82■□□□□ 0.92
USF1-202ENST00000368020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.78■□□□□ 0.92
USF1-202ENST00000368020 ABCA8O94911 1581 aa20.78■□□□□ 0.92
USF1-202ENST00000368020 RAPGEF6Q8TEU7 1601 aa20.77■□□□□ 0.92
USF1-202ENST00000368020 PLB1Q6P1J6 1458 aa20.77■□□□□ 0.92
USF1-202ENST00000368020 UACAQ9BZF9 1416 aa20.76■□□□□ 0.91
USF1-202ENST00000368020 HECW1Q76N89 1606 aa20.76■□□□□ 0.91
USF1-202ENST00000368020 CCDC18Q5T9S5 1454 aa20.75■□□□□ 0.91
USF1-202ENST00000368020 RIMBP3CA6NJZ7 1639 aa20.73■□□□□ 0.91
USF1-202ENST00000368020 RIMBP3BA6NNM3 1639 aa20.73■□□□□ 0.91
USF1-202ENST00000368020 RIMBP3Q9UFD9 1639 aa20.73■□□□□ 0.91
USF1-202ENST00000368020 UHRF1BP1LA0JNW5 1464 aa20.73■□□□□ 0.91
USF1-202ENST00000368020 PHLDB1Q86UU1 1377 aa20.73■□□□□ 0.91
USF1-202ENST00000368020 NUP153P49790 1475 aaKnown RBP20.72■□□□□ 0.91
USF1-202ENST00000368020 DHX57Q6P158 1386 aaKnown RBP20.72■□□□□ 0.91
USF1-202ENST00000368020 ATP1B4Q9UN42 357 aaPredicted RBP20.7■□□□□ 0.9
USF1-202ENST00000368020 EHBP1L1Q8N3D4 1523 aa20.7■□□□□ 0.9
USF1-202ENST00000368020 ABCC2Q92887 1545 aa20.7■□□□□ 0.9
USF1-202ENST00000368020 LRRIQ1Q96JM4 1722 aa20.69■□□□□ 0.9
USF1-202ENST00000368020 EPRSP07814 1512 aaKnown RBP20.69■□□□□ 0.9
USF1-202ENST00000368020 SUPT6HQ7KZ85 1726 aaKnown RBP20.69■□□□□ 0.9
USF1-202ENST00000368020 MTUS2Q5JR59 1369 aa20.68■□□□□ 0.9
USF1-202ENST00000368020 SETD5Q9C0A6 1442 aa20.63■□□□□ 0.89
USF1-202ENST00000368020 ATP10BO94823 1461 aa20.62■□□□□ 0.89
USF1-202ENST00000368020 ZNF316A6NFI3 1004 aaPredicted RBP20.62■□□□□ 0.89
USF1-202ENST00000368020 KDM5BQ9UGL1 1544 aa20.62■□□□□ 0.89
USF1-202ENST00000368020 FGD6Q6ZV73 1430 aa20.62■□□□□ 0.89
USF1-202ENST00000368020 ADCY10Q96PN6 1610 aa20.62■□□□□ 0.89
USF1-202ENST00000368020 CDK11AQ9UQ88 783 aaPredicted RBP20.61■□□□□ 0.89
USF1-202ENST00000368020 CDK13Q14004 1512 aaKnown RBP20.6■□□□□ 0.89
USF1-202ENST00000368020 CYB5RLQ6IPT4 315 aa20.59■□□□□ 0.89
USF1-202ENST00000368020 RAB3GAP2Q9H2M9 1393 aa20.59■□□□□ 0.89
USF1-202ENST00000368020 FAM50AQ14320 339 aaKnown RBP20.58■□□□□ 0.88
USF1-202ENST00000368020 DIEXFQ68CQ4 756 aaKnown RBP20.58■□□□□ 0.88
USF1-202ENST00000368020 NCOA2Q15596 1464 aa20.57■□□□□ 0.88
USF1-202ENST00000368020 MYOM3Q5VTT5 1437 aa20.57■□□□□ 0.88
USF1-202ENST00000368020 ARID3CA6NKF2 412 aa20.55■□□□□ 0.88
USF1-202ENST00000368020 ITGAEP38570 1179 aa20.54■□□□□ 0.88
USF1-202ENST00000368020 ZCCHC11Q5TAX3 1644 aaKnown RBP20.53■□□□□ 0.88
USF1-202ENST00000368020 PLEKHD1A6NEE1 506 aa20.53■□□□□ 0.88
USF1-202ENST00000368020 NPM1P06748 294 aaKnown RBP eCLIP20.52■□□□□ 0.88
USF1-202ENST00000368020 MAGI3Q5TCQ9 1506 aa20.5■□□□□ 0.87
USF1-202ENST00000368020 TROQ12816 1431 aaPredicted RBP20.5■□□□□ 0.87
USF1-202ENST00000368020 PTPN23Q9H3S7 1636 aa20.48■□□□□ 0.87
USF1-202ENST00000368020 TCOF1Q13428 1488 aaKnown RBP20.46■□□□□ 0.87
USF1-202ENST00000368020 MAPKBP1O60336 1514 aa20.45■□□□□ 0.86
USF1-202ENST00000368020 MIA2Q96PC5 1412 aa20.45■□□□□ 0.86
USF1-202ENST00000368020 HFM1A2PYH4 1435 aa20.44■□□□□ 0.86
USF1-202ENST00000368020 WDR7Q9Y4E6 1490 aa20.41■□□□□ 0.86
USF1-202ENST00000368020 ASXL2Q76L83 1435 aa20.41■□□□□ 0.86
USF1-202ENST00000368020 TIMELESSQ9UNS1 1208 aa20.4■□□□□ 0.86
USF1-202ENST00000368020 AKNAQ7Z591 1439 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 148.5 ms