RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 BIVM-ERCC5R4GMW8 1640 aa11.89□□□□□ -0.51
SYNE1-209ENST00000367257 NPM2Q86SE8 214 aaKnown RBP11.89□□□□□ -0.51
SYNE1-209ENST00000367257 NCLP19338 710 aaKnown RBP11.88□□□□□ -0.51
SYNE1-209ENST00000367257 CDK11BP21127 795 aaKnown RBP11.87□□□□□ -0.51
SYNE1-209ENST00000367257 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-209ENST00000367257 CFTRP13569 1480 aa11.83□□□□□ -0.51
SYNE1-209ENST00000367257 PODXL2Q9NZ53 605 aa11.83□□□□□ -0.52
SYNE1-209ENST00000367257 KIF21AQ7Z4S6 1674 aa11.83□□□□□ -0.52
SYNE1-209ENST00000367257 NAP1L5Q96NT1 182 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-209ENST00000367257 BECN1Q14457 450 aa11.82□□□□□ -0.52
SYNE1-209ENST00000367257 CCDC136Q96JN2 1154 aa11.81□□□□□ -0.52
SYNE1-209ENST00000367257 HNRNPUQ00839 825 aaKnown RBP eCLIP11.81□□□□□ -0.52
SYNE1-209ENST00000367257 LAMC3Q9Y6N6 1575 aa11.81□□□□□ -0.52
SYNE1-209ENST00000367257 BAZ1BQ9UIG0 1483 aaKnown RBP11.8□□□□□ -0.52
SYNE1-209ENST00000367257 THOC2Q8NI27 1593 aaKnown RBP11.8□□□□□ -0.52
SYNE1-209ENST00000367257 TRIM44Q96DX7 344 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-209ENST00000367257 PKNOX2Q96KN3 472 aa11.79□□□□□ -0.52
SYNE1-209ENST00000367257 WDR43Q15061 677 aaKnown RBP eCLIP11.78□□□□□ -0.52
SYNE1-209ENST00000367257 TMC1Q8TDI8 760 aa11.78□□□□□ -0.52
SYNE1-209ENST00000367257 MYH16Q9H6N6 1097 aa11.78□□□□□ -0.52
SYNE1-209ENST00000367257 ESF1Q9H501 851 aaKnown RBP11.77□□□□□ -0.53
SYNE1-209ENST00000367257 GOLGA6L22H0YM25 854 aa11.76□□□□□ -0.53
SYNE1-209ENST00000367257 DNAJC5BQ9UF47 199 aa11.76□□□□□ -0.53
SYNE1-209ENST00000367257 PPM1GO15355 546 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-209ENST00000367257 CDCA8Q53HL2 280 aa11.74□□□□□ -0.53
SYNE1-209ENST00000367257 CHMP4BQ9H444 224 aaKnown RBP11.73□□□□□ -0.53
SYNE1-209ENST00000367257 VSIG10Q8N0Z9 540 aa11.71□□□□□ -0.53
SYNE1-209ENST00000367257 NOP58Q9Y2X3 529 aaKnown RBP11.71□□□□□ -0.53
SYNE1-209ENST00000367257 TOP2BQ02880 1626 aa11.71□□□□□ -0.53
SYNE1-209ENST00000367257 SYNJ1O43426 1573 aa11.71□□□□□ -0.54
SYNE1-209ENST00000367257 EIF4G2P78344 907 aaKnown RBP eCLIP11.7□□□□□ -0.54
SYNE1-209ENST00000367257 TSPY4P0CV99 314 aa11.7□□□□□ -0.54
SYNE1-209ENST00000367257 TSPY10P0CW01 314 aa11.7□□□□□ -0.54
SYNE1-209ENST00000367257 FBLN2P98095 1184 aa11.7□□□□□ -0.54
SYNE1-209ENST00000367257 GOLGA3Q08378 1498 aa11.7□□□□□ -0.54
SYNE1-209ENST00000367257 MRS2Q9HD23 443 aa11.69□□□□□ -0.54
SYNE1-209ENST00000367257 SUPT16HQ9Y5B9 1047 aaKnown RBP11.69□□□□□ -0.54
SYNE1-209ENST00000367257 NPM1P06748 294 aaKnown RBP eCLIP11.69□□□□□ -0.54
SYNE1-209ENST00000367257 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-209ENST00000367257 MTUS2Q5JR59 1369 aa11.69□□□□□ -0.54
SYNE1-209ENST00000367257 CLIP1P30622 1438 aa11.68□□□□□ -0.54
SYNE1-209ENST00000367257 DDX10Q13206 875 aaKnown RBP11.67□□□□□ -0.54
SYNE1-209ENST00000367257 FAM9BQ8IZU0 186 aa11.67□□□□□ -0.54
SYNE1-209ENST00000367257 TIMELESSQ9UNS1 1208 aa11.67□□□□□ -0.54
SYNE1-209ENST00000367257 TARBP1Q13395 1621 aaKnown RBP11.67□□□□□ -0.54
SYNE1-209ENST00000367257 CFAP44Q96MT7 982 aa11.67□□□□□ -0.54
SYNE1-209ENST00000367257 STAG3Q9UJ98 1225 aa11.67□□□□□ -0.54
SYNE1-209ENST00000367257 MS4A1P11836 297 aa11.66□□□□□ -0.54
SYNE1-209ENST00000367257 ARXQ96QS3 562 aa11.66□□□□□ -0.54
SYNE1-209ENST00000367257 RSPH6AQ9H0K4 717 aa11.66□□□□□ -0.54
SYNE1-209ENST00000367257 MIER1Q8N108 512 aa11.65□□□□□ -0.54
SYNE1-209ENST00000367257 CASC1Q6TDU7 716 aa11.65□□□□□ -0.55
SYNE1-209ENST00000367257 RBM19Q9Y4C8 960 aaKnown RBP11.64□□□□□ -0.55
SYNE1-209ENST00000367257 CFAP53Q96M91 514 aa11.63□□□□□ -0.55
SYNE1-209ENST00000367257 WDR62O43379 1518 aa11.63□□□□□ -0.55
SYNE1-209ENST00000367257 CUX1P39880 1505 aa11.63□□□□□ -0.55
SYNE1-209ENST00000367257 P3H3Q8IVL6 736 aa11.62□□□□□ -0.55
SYNE1-209ENST00000367257 TSHZ2Q9NRE2 1034 aa11.62□□□□□ -0.55
SYNE1-209ENST00000367257 A0A0U1RQG5 324 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-209ENST00000367257 ANO8Q9HCE9 1232 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-209ENST00000367257 AMER1Q5JTC6 1135 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-209ENST00000367257 HSP90AA2PQ14568 343 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-209ENST00000367257 NESP48681 1621 aa11.59□□□□□ -0.55
SYNE1-209ENST00000367257 CEP164Q9UPV0 1460 aa11.58□□□□□ -0.55
SYNE1-209ENST00000367257 ABCA5Q8WWZ7 1642 aa11.58□□□□□ -0.55
SYNE1-209ENST00000367257 TNIKQ9UKE5 1360 aa11.58□□□□□ -0.56
SYNE1-209ENST00000367257 PTMSP20962 102 aa11.58□□□□□ -0.56
SYNE1-209ENST00000367257 GOLGA6L6A8MZA4 724 aa11.57□□□□□ -0.56
SYNE1-209ENST00000367257 PNNQ9H307 717 aaKnown RBP11.57□□□□□ -0.56
SYNE1-209ENST00000367257 ZRSR1Q15695 479 aaKnown RBP11.56□□□□□ -0.56
SYNE1-209ENST00000367257 PPP4R2Q9NY27 417 aa11.56□□□□□ -0.56
SYNE1-209ENST00000367257 URB2Q14146 1524 aaKnown RBP11.56□□□□□ -0.56
SYNE1-209ENST00000367257 NRDCO43847 1150 aa11.55□□□□□ -0.56
SYNE1-209ENST00000367257 ARID4BQ4LE39 1312 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-209ENST00000367257 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
SYNE1-209ENST00000367257 ABCC8Q09428 1581 aa11.55□□□□□ -0.56
SYNE1-209ENST00000367257 DNMBPQ6XZF7 1577 aa11.55□□□□□ -0.56
SYNE1-209ENST00000367257 CEP162Q5TB80 1403 aa11.53□□□□□ -0.56
SYNE1-209ENST00000367257 CADPSQ9ULU8 1353 aa11.53□□□□□ -0.56
SYNE1-209ENST00000367257 HAP1P54257 671 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-209ENST00000367257 LAS1LQ9Y4W2 734 aaKnown RBP11.52□□□□□ -0.56
SYNE1-209ENST00000367257 L1TD1Q5T7N2 865 aaKnown RBP11.52□□□□□ -0.57
SYNE1-209ENST00000367257 KIF27Q86VH2 1401 aa11.51□□□□□ -0.57
SYNE1-209ENST00000367257 FHAD1B1AJZ9 1412 aa11.51□□□□□ -0.57
SYNE1-209ENST00000367257 CCER2I3L3R5 266 aa11.5□□□□□ -0.57
SYNE1-209ENST00000367257 NUDCQ9Y266 331 aa11.5□□□□□ -0.57
SYNE1-209ENST00000367257 PTMAP06454 111 aaKnown RBP11.49□□□□□ -0.57
SYNE1-209ENST00000367257 UBE2Q2Q8WVN8 375 aa11.49□□□□□ -0.57
SYNE1-209ENST00000367257 KNSTRNQ9Y448 316 aa11.49□□□□□ -0.57
SYNE1-209ENST00000367257 CUX2O14529 1486 aa11.48□□□□□ -0.57
SYNE1-209ENST00000367257 PLEKHD1A6NEE1 506 aa11.47□□□□□ -0.57
SYNE1-209ENST00000367257 IRX6P78412 446 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-209ENST00000367257 PBRM1Q86U86 1689 aa11.46□□□□□ -0.57
SYNE1-209ENST00000367257 WRNQ14191 1432 aaPredicted RBP eCLIP11.46□□□□□ -0.57
SYNE1-209ENST00000367257 FTSJ3Q8IY81 847 aaKnown RBP11.45□□□□□ -0.58
SYNE1-209ENST00000367257 DNTTIP2Q5QJE6 756 aaKnown RBP11.44□□□□□ -0.58
SYNE1-209ENST00000367257 TOPBP1Q92547 1522 aa11.44□□□□□ -0.58
SYNE1-209ENST00000367257 MAPK8IP3Q9UPT6 1336 aa11.44□□□□□ -0.58
SYNE1-209ENST00000367257 CHAF1AQ13111 956 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-209ENST00000367257 CHIC2Q9UKJ5 165 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms