RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 NISCHQ9Y2I1 1504 aa16.11■□□□□ 0.17
SYNE1-209ENST00000367257 MYT1Q01538 1121 aa14.86□□□□□ -0.03
SYNE1-209ENST00000367257 PELP1Q8IZL8 1130 aaKnown RBP14.83□□□□□ -0.04
SYNE1-209ENST00000367257 CCDC180Q9P1Z9 1646 aa14.51□□□□□ -0.09
SYNE1-209ENST00000367257 DCAF8L2P0C7V8 631 aa14.46□□□□□ -0.09
SYNE1-209ENST00000367257 SUPT5HO00267 1087 aaKnown RBP13.95□□□□□ -0.18
SYNE1-209ENST00000367257 APLP2Q06481 763 aa13.8□□□□□ -0.2
SYNE1-209ENST00000367257 ZEB1P37275 1124 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-209ENST00000367257 FAM9AQ8IZU1 332 aaPredicted RBP13.74□□□□□ -0.21
SYNE1-209ENST00000367257 CCER1Q8TC90 406 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-209ENST00000367257 TTBK1Q5TCY1 1321 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-209ENST00000367257 CENPBP07199 599 aaPredicted RBP13.7□□□□□ -0.22
SYNE1-209ENST00000367257 DCAF1Q9Y4B6 1507 aa13.67□□□□□ -0.22
SYNE1-209ENST00000367257 ERICH6Q7L0X2 663 aa13.65□□□□□ -0.22
SYNE1-209ENST00000367257 ZCCHC6Q5VYS8 1495 aaKnown RBP13.64□□□□□ -0.23
SYNE1-209ENST00000367257 MYO15BQ96JP2 1530 aa13.62□□□□□ -0.23
SYNE1-209ENST00000367257 SHROOM4Q9ULL8 1493 aa13.51□□□□□ -0.25
SYNE1-209ENST00000367257 UNC13AQ9UPW8 1703 aa13.45□□□□□ -0.26
SYNE1-209ENST00000367257 PCGF6Q9BYE7 350 aa13.34□□□□□ -0.27
SYNE1-209ENST00000367257 NEFLP07196 543 aa13.3□□□□□ -0.28
SYNE1-209ENST00000367257 HRCP23327 699 aa13.26□□□□□ -0.29
SYNE1-209ENST00000367257 NACADO15069 1562 aa13.22□□□□□ -0.29
SYNE1-209ENST00000367257 TRIM41Q8WV44 630 aa13.18□□□□□ -0.3
SYNE1-209ENST00000367257 EHMT2Q96KQ7 1210 aa13.13□□□□□ -0.31
SYNE1-209ENST00000367257 YTHDC1Q96MU7 727 aaKnown RBP13.11□□□□□ -0.31
SYNE1-209ENST00000367257 BICRAQ9NZM4 1560 aa13.1□□□□□ -0.31
SYNE1-209ENST00000367257 TRIM26Q12899 539 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-209ENST00000367257 RB1CC1Q8TDY2 1594 aa13□□□□□ -0.33
SYNE1-209ENST00000367257 UBTFP17480 764 aaKnown RBP12.98□□□□□ -0.33
SYNE1-209ENST00000367257 ABCC9O60706 1549 aa12.95□□□□□ -0.34
SYNE1-209ENST00000367257 DAXXQ9UER7 740 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-209ENST00000367257 RTL5Q5HYW3 569 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-209ENST00000367257 ATP1B4Q9UN42 357 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-209ENST00000367257 GTF3C3Q9Y5Q9 886 aa12.81□□□□□ -0.36
SYNE1-209ENST00000367257 PPARGC1BQ86YN6 1023 aaKnown RBP12.8□□□□□ -0.36
SYNE1-209ENST00000367257 GLIPR1L2Q4G1C9 344 aa12.74□□□□□ -0.37
SYNE1-209ENST00000367257 SCRIBQ14160 1630 aa12.73□□□□□ -0.37
SYNE1-209ENST00000367257 PEG3Q9GZU2 1588 aa12.71□□□□□ -0.38
SYNE1-209ENST00000367257 RANGAP1P46060 587 aaPredicted RBP12.68□□□□□ -0.38
SYNE1-209ENST00000367257 ACIN1Q9UKV3 1341 aaKnown RBP12.66□□□□□ -0.38
SYNE1-209ENST00000367257 EIF5BO60841 1220 aaKnown RBP12.63□□□□□ -0.39
SYNE1-209ENST00000367257 BCL11AQ9H165 835 aa12.63□□□□□ -0.39
SYNE1-209ENST00000367257 MYT1LQ9UL68 1186 aa12.61□□□□□ -0.39
SYNE1-209ENST00000367257 CLSPNQ9HAW4 1339 aa12.59□□□□□ -0.39
SYNE1-209ENST00000367257 ZNF316A6NFI3 1004 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-209ENST00000367257 CHIC1Q5VXU3 224 aa12.54□□□□□ -0.4
SYNE1-209ENST00000367257 DIEXFQ68CQ4 756 aaKnown RBP12.54□□□□□ -0.4
SYNE1-209ENST00000367257 SCAF1Q9H7N4 1312 aaKnown RBP12.52□□□□□ -0.41
SYNE1-209ENST00000367257 EIF4G1Q04637 1599 aaKnown RBP12.51□□□□□ -0.41
SYNE1-209ENST00000367257 SMARCA4P51532 1647 aa12.51□□□□□ -0.41
SYNE1-209ENST00000367257 ANP32EQ9BTT0 268 aa12.44□□□□□ -0.42
SYNE1-209ENST00000367257 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-209ENST00000367257 HNRNPUL2Q1KMD3 747 aaKnown RBP12.42□□□□□ -0.42
SYNE1-209ENST00000367257 MROH2BQ7Z745 1585 aa12.4□□□□□ -0.42
SYNE1-209ENST00000367257 CECR2Q9BXF3 1484 aa12.4□□□□□ -0.42
SYNE1-209ENST00000367257 CDK11AQ9UQ88 783 aaPredicted RBP12.4□□□□□ -0.42
SYNE1-209ENST00000367257 BAZ1AQ9NRL2 1556 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-209ENST00000367257 POLR3GLQ9BT43 218 aa12.38□□□□□ -0.43
SYNE1-209ENST00000367257 ANP32CO43423 234 aa12.37□□□□□ -0.43
SYNE1-209ENST00000367257 ITGAEP38570 1179 aa12.36□□□□□ -0.43
SYNE1-209ENST00000367257 WIZO95785 1651 aa12.35□□□□□ -0.43
SYNE1-209ENST00000367257 ZBTB47Q9UFB7 747 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-209ENST00000367257 PRDM2Q13029 1718 aa12.31□□□□□ -0.44
SYNE1-209ENST00000367257 BCANQ96GW7 911 aa12.31□□□□□ -0.44
SYNE1-209ENST00000367257 HMGXB3Q12766 1538 aa12.29□□□□□ -0.44
SYNE1-209ENST00000367257 RSF1Q96T23 1441 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-209ENST00000367257 NEUROD1Q13562 356 aa12.26□□□□□ -0.45
SYNE1-209ENST00000367257 LOC105371045A0A1W2PR82 267 aa12.26□□□□□ -0.45
SYNE1-209ENST00000367257 SMARCA2P51531 1590 aa12.25□□□□□ -0.45
SYNE1-209ENST00000367257 ANP32AP39687 249 aaKnown RBP12.24□□□□□ -0.45
SYNE1-209ENST00000367257 FAM50AQ14320 339 aaKnown RBP12.23□□□□□ -0.45
SYNE1-209ENST00000367257 SLC24A1O60721 1099 aa12.22□□□□□ -0.45
SYNE1-209ENST00000367257 NEFMP07197 916 aa12.22□□□□□ -0.45
SYNE1-209ENST00000367257 TRIM52Q96A61 297 aa12.22□□□□□ -0.45
SYNE1-209ENST00000367257 TOP2AP11388 1531 aaKnown RBP12.2□□□□□ -0.46
SYNE1-209ENST00000367257 CC2D2AQ9P2K1 1620 aa12.19□□□□□ -0.46
SYNE1-209ENST00000367257 SLC4A1APQ9BWU0 796 aaKnown RBP12.19□□□□□ -0.46
SYNE1-209ENST00000367257 PRKCSHP14314 528 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-209ENST00000367257 ANP32BQ92688 251 aaKnown RBP12.17□□□□□ -0.46
SYNE1-209ENST00000367257 NCAPD3P42695 1498 aa12.16□□□□□ -0.46
SYNE1-209ENST00000367257 ATAD2BQ9ULI0 1458 aa12.16□□□□□ -0.46
SYNE1-209ENST00000367257 CANXP27824 592 aaKnown RBP12.13□□□□□ -0.47
SYNE1-209ENST00000367257 UPF2Q9HAU5 1272 aaKnown RBP12.08□□□□□ -0.48
SYNE1-209ENST00000367257 NBR1Q14596 966 aa12.08□□□□□ -0.48
SYNE1-209ENST00000367257 CSRNP3Q8WYN3 585 aa12.05□□□□□ -0.48
SYNE1-209ENST00000367257 PABPN1Q86U42 306 aaKnown RBP eCLIP12.04□□□□□ -0.48
SYNE1-209ENST00000367257 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.03□□□□□ -0.48
SYNE1-209ENST00000367257 TONSLQ96HA7 1378 aa11.99□□□□□ -0.49
SYNE1-209ENST00000367257 TNNT2P45379 298 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-209ENST00000367257 FKBP8Q14318 412 aa11.99□□□□□ -0.49
SYNE1-209ENST00000367257 CNGB1Q14028 1251 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-209ENST00000367257 RTN4Q9NQC3 1192 aaKnown RBP11.95□□□□□ -0.5
SYNE1-209ENST00000367257 ERICH6BQ5W0A0 696 aa11.93□□□□□ -0.5
SYNE1-209ENST00000367257 ZNF326Q5BKZ1 582 aaKnown RBP11.93□□□□□ -0.5
SYNE1-209ENST00000367257 EEA1Q15075 1411 aa11.93□□□□□ -0.5
SYNE1-209ENST00000367257 DEKP35659 375 aaKnown RBP11.91□□□□□ -0.5
SYNE1-209ENST00000367257 HSP90AA1P07900 732 aaKnown RBP11.91□□□□□ -0.5
SYNE1-209ENST00000367257 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
SYNE1-209ENST00000367257 WDR97A6NE52 1622 aa11.9□□□□□ -0.5
SYNE1-209ENST00000367257 DDRGK1Q96HY6 314 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms