RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DHX57Q6P158 1386 aaKnown RBP30.92■■■□□ 2.54
CCDC88B-203ENST00000359902 CLSPNQ9HAW4 1339 aa30.92■■■□□ 2.54
CCDC88B-203ENST00000359902 LRRC9Q6ZRR7 1453 aa30.92■■■□□ 2.54
CCDC88B-203ENST00000359902 TDRD9Q8NDG6 1382 aaKnown RBP30.9■■■□□ 2.54
CCDC88B-203ENST00000359902 ABCA5Q8WWZ7 1642 aa30.9■■■□□ 2.54
CCDC88B-203ENST00000359902 EFCAB5A4FU69 1503 aa30.89■■■□□ 2.54
CCDC88B-203ENST00000359902 KIF21AQ7Z4S6 1674 aa30.88■■■□□ 2.53
CCDC88B-203ENST00000359902 CTTNBP2Q8WZ74 1663 aa30.88■■■□□ 2.53
CCDC88B-203ENST00000359902 PCF11O94913 1555 aaKnown RBP30.88■■■□□ 2.53
CCDC88B-203ENST00000359902 FHOD3Q2V2M9 1422 aa30.87■■■□□ 2.53
CCDC88B-203ENST00000359902 GAPVD1Q14C86 1478 aa30.85■■■□□ 2.53
CCDC88B-203ENST00000359902 CFAP43Q8NDM7 1665 aa30.83■■■□□ 2.53
CCDC88B-203ENST00000359902 FYCO1Q9BQS8 1478 aa30.78■■■□□ 2.52
CCDC88B-203ENST00000359902 AQRO60306 1485 aaKnown RBP eCLIP30.78■■■□□ 2.52
CCDC88B-203ENST00000359902 CASKIN1Q8WXD9 1431 aa30.77■■■□□ 2.52
CCDC88B-203ENST00000359902 PHLDB1Q86UU1 1377 aa30.77■■■□□ 2.52
CCDC88B-203ENST00000359902 ITGAEP38570 1179 aa30.76■■■□□ 2.51
CCDC88B-203ENST00000359902 ATP1B4Q9UN42 357 aaPredicted RBP30.75■■■□□ 2.51
CCDC88B-203ENST00000359902 TARBP1Q13395 1621 aaKnown RBP30.74■■■□□ 2.51
CCDC88B-203ENST00000359902 FMN1Q68DA7 1419 aa30.69■■■□□ 2.5
CCDC88B-203ENST00000359902 SAMD9Q5K651 1589 aa30.64■■■□□ 2.5
CCDC88B-203ENST00000359902 RAB3GAP2Q9H2M9 1393 aa30.63■■■□□ 2.49
CCDC88B-203ENST00000359902 SNAPC4Q5SXM2 1469 aa30.63■■■□□ 2.49
CCDC88B-203ENST00000359902 SCAF1Q9H7N4 1312 aaKnown RBP30.61■■■□□ 2.49
CCDC88B-203ENST00000359902 FAM50AQ14320 339 aaKnown RBP30.59■■■□□ 2.49
CCDC88B-203ENST00000359902 SETD5Q9C0A6 1442 aa30.57■■■□□ 2.48
CCDC88B-203ENST00000359902 MRC2Q9UBG0 1479 aa30.57■■■□□ 2.48
CCDC88B-203ENST00000359902 ACIN1Q9UKV3 1341 aaKnown RBP30.53■■■□□ 2.48
CCDC88B-203ENST00000359902 PBRM1Q86U86 1689 aa30.52■■■□□ 2.48
CCDC88B-203ENST00000359902 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.51■■■□□ 2.475e-7■■■■■ 105.2
CCDC88B-203ENST00000359902 NEUROD1Q13562 356 aa30.49■■■□□ 2.47
CCDC88B-203ENST00000359902 GRIN2BQ13224 1484 aa30.48■■■□□ 2.47
CCDC88B-203ENST00000359902 MAPKBP1O60336 1514 aa30.46■■■□□ 2.47
CCDC88B-203ENST00000359902 LRRIQ1Q96JM4 1722 aa30.45■■■□□ 2.46
CCDC88B-203ENST00000359902 MIER1Q8N108 512 aa30.45■■■□□ 2.46
CCDC88B-203ENST00000359902 CENPBP07199 599 aaPredicted RBP30.44■■■□□ 2.46
CCDC88B-203ENST00000359902 MTUS2Q5JR59 1369 aa30.43■■■□□ 2.46
CCDC88B-203ENST00000359902 ADAMTS12P58397 1594 aa30.42■■■□□ 2.46
CCDC88B-203ENST00000359902 THOC2Q8NI27 1593 aaKnown RBP30.41■■■□□ 2.46
CCDC88B-203ENST00000359902 FGD6Q6ZV73 1430 aa30.41■■■□□ 2.46
CCDC88B-203ENST00000359902 IFT140Q96RY7 1462 aa30.35■■■□□ 2.45
CCDC88B-203ENST00000359902 IQGAP2Q13576 1575 aa30.35■■■□□ 2.45
CCDC88B-203ENST00000359902 WDR62O43379 1518 aa30.34■■■□□ 2.45
CCDC88B-203ENST00000359902 PELP1Q8IZL8 1130 aaKnown RBP30.32■■■□□ 2.44
CCDC88B-203ENST00000359902 ZNF608Q9ULD9 1512 aaPredicted RBP30.32■■■□□ 2.44
CCDC88B-203ENST00000359902 NCOA2Q15596 1464 aa30.31■■■□□ 2.44
CCDC88B-203ENST00000359902 EHBP1L1Q8N3D4 1523 aa30.28■■■□□ 2.44
CCDC88B-203ENST00000359902 MYOM3Q5VTT5 1437 aa30.26■■■□□ 2.44
CCDC88B-203ENST00000359902 SUPT6HQ7KZ85 1726 aaKnown RBP30.26■■■□□ 2.43
CCDC88B-203ENST00000359902 CCDC18Q5T9S5 1454 aa30.25■■■□□ 2.43
CCDC88B-203ENST00000359902 MAGI3Q5TCQ9 1506 aa30.22■■■□□ 2.43
CCDC88B-203ENST00000359902 PTPRKQ15262 1439 aa30.22■■■□□ 2.43
CCDC88B-203ENST00000359902 HECW1Q76N89 1606 aa30.21■■■□□ 2.43
CCDC88B-203ENST00000359902 UGGT2Q9NYU1 1516 aa30.21■■■□□ 2.43
CCDC88B-203ENST00000359902 ARHGEF11O15085 1522 aa30.2■■■□□ 2.43
CCDC88B-203ENST00000359902 SIN3AQ96ST3 1273 aa30.19■■■□□ 2.42
CCDC88B-203ENST00000359902 YTHDC1Q96MU7 727 aaKnown RBP30.17■■■□□ 2.42
CCDC88B-203ENST00000359902 HFM1A2PYH4 1435 aa30.16■■■□□ 2.42
CCDC88B-203ENST00000359902 EPRSP07814 1512 aaKnown RBP30.15■■■□□ 2.42
CCDC88B-203ENST00000359902 KIAA0586Q9BVV6 1533 aa30.13■■■□□ 2.41
CCDC88B-203ENST00000359902 PTPN23Q9H3S7 1636 aa30.11■■■□□ 2.41
CCDC88B-203ENST00000359902 TIMELESSQ9UNS1 1208 aa30.11■■■□□ 2.41
CCDC88B-203ENST00000359902 GTF3C3Q9Y5Q9 886 aa30.11■■■□□ 2.41
CCDC88B-203ENST00000359902 EIF4G3O43432 1585 aaKnown RBP30.1■■■□□ 2.41
CCDC88B-203ENST00000359902 ERCC6Q03468 1493 aa30.1■■■□□ 2.41
CCDC88B-203ENST00000359902 NAIPQ13075 1403 aa30.07■■■□□ 2.4
CCDC88B-203ENST00000359902 GRIN2AQ12879 1464 aa30.07■■■□□ 2.4
CCDC88B-203ENST00000359902 CDK13Q14004 1512 aaKnown RBP30.07■■■□□ 2.4
CCDC88B-203ENST00000359902 DISP1Q96F81 1524 aa30.05■■■□□ 2.4
CCDC88B-203ENST00000359902 TCOF1Q13428 1488 aaKnown RBP30.04■■■□□ 2.4
CCDC88B-203ENST00000359902 UACAQ9BZF9 1416 aa30.03■■■□□ 2.4
CCDC88B-203ENST00000359902 KIAA0556O60303 1618 aa30.02■■■□□ 2.4
CCDC88B-203ENST00000359902 ARID3CA6NKF2 412 aa29.97■■■□□ 2.39
CCDC88B-203ENST00000359902 MAGI1Q96QZ7 1491 aaPredicted RBP29.97■■■□□ 2.39
CCDC88B-203ENST00000359902 MIA2Q96PC5 1412 aa29.95■■■□□ 2.39
CCDC88B-203ENST00000359902 PPP1R15AO75807 674 aaPredicted RBP29.95■■■□□ 2.39
CCDC88B-203ENST00000359902 NUP153P49790 1475 aaKnown RBP29.9■■■□□ 2.38
CCDC88B-203ENST00000359902 CHMP7Q8WUX9 453 aaPredicted RBP29.9■■■□□ 2.38
CCDC88B-203ENST00000359902 SYNJ2O15056 1496 aa29.9■■■□□ 2.38
CCDC88B-203ENST00000359902 RRP7BPQ9NSQ0 103 aa29.89■■■□□ 2.37
CCDC88B-203ENST00000359902 CHIC2Q9UKJ5 165 aa29.88■■■□□ 2.37
CCDC88B-203ENST00000359902 RAPGEF6Q8TEU7 1601 aa29.87■■■□□ 2.37
CCDC88B-203ENST00000359902 CEP170Q5SW79 1584 aa29.87■■■□□ 2.37
CCDC88B-203ENST00000359902 AKNAQ7Z591 1439 aa29.86■■■□□ 2.37
CCDC88B-203ENST00000359902 GCC2Q8IWJ2 1684 aa29.84■■■□□ 2.37
CCDC88B-203ENST00000359902 TONSLQ96HA7 1378 aa29.83■■■□□ 2.37
CCDC88B-203ENST00000359902 FBLN2P98095 1184 aa29.78■■■□□ 2.36
CCDC88B-203ENST00000359902 CDK11AQ9UQ88 783 aaPredicted RBP29.78■■■□□ 2.36
CCDC88B-203ENST00000359902 NUP160Q12769 1436 aa29.76■■■□□ 2.36
CCDC88B-203ENST00000359902 KDM6BO15054 1643 aa29.75■■■□□ 2.35
CCDC88B-203ENST00000359902 JPH4Q96JJ6 628 aa29.72■■■□□ 2.35
CCDC88B-203ENST00000359902 DENND4BO75064 1496 aaPredicted RBP29.72■■■□□ 2.35
CCDC88B-203ENST00000359902 PLB1Q6P1J6 1458 aa29.71■■■□□ 2.35
CCDC88B-203ENST00000359902 DDX10Q13206 875 aaKnown RBP29.71■■■□□ 2.35
CCDC88B-203ENST00000359902 DAPK1P53355 1430 aa29.7■■■□□ 2.35
CCDC88B-203ENST00000359902 TRIM52Q96A61 297 aa29.7■■■□□ 2.35
CCDC88B-203ENST00000359902 CARMIL2Q6F5E8 1435 aa29.69■■■□□ 2.34
CCDC88B-203ENST00000359902 TROQ12816 1431 aaPredicted RBP29.69■■■□□ 2.34
CCDC88B-203ENST00000359902 ZNF644Q9H582 1327 aaPredicted RBP29.68■■■□□ 2.34
CCDC88B-203ENST00000359902 ROCK1Q13464 1354 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms