RNA–Protein interactions for RNA: ENST00000359541.6

GTF3C2-202, Transcript of general transcription factor IIIC subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C2, Length 3,992 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C2-202ENST00000359541 CUL7Q14999 1698 aa13.64□□□□□ -0.23
GTF3C2-202ENST00000359541 NESP48681 1621 aa13.64□□□□□ -0.23
GTF3C2-202ENST00000359541 EFCAB5A4FU69 1503 aa13.63□□□□□ -0.23
GTF3C2-202ENST00000359541 ITGAEP38570 1179 aa13.62□□□□□ -0.23
GTF3C2-202ENST00000359541 TIAM1Q13009 1591 aa13.62□□□□□ -0.23
GTF3C2-202ENST00000359541 MYT1Q01538 1121 aa13.6□□□□□ -0.23
GTF3C2-202ENST00000359541 P3H3Q8IVL6 736 aa13.6□□□□□ -0.23
GTF3C2-202ENST00000359541 DHX57Q6P158 1386 aaKnown RBP13.58□□□□□ -0.23
GTF3C2-202ENST00000359541 FMN1Q68DA7 1419 aa13.58□□□□□ -0.24
GTF3C2-202ENST00000359541 LRRC9Q6ZRR7 1453 aa13.58□□□□□ -0.24
GTF3C2-202ENST00000359541 FAM50AQ14320 339 aaKnown RBP13.56□□□□□ -0.24
GTF3C2-202ENST00000359541 FYCO1Q9BQS8 1478 aa13.56□□□□□ -0.24
GTF3C2-202ENST00000359541 URB2Q14146 1524 aaKnown RBP13.55□□□□□ -0.24
GTF3C2-202ENST00000359541 ACIN1Q9UKV3 1341 aaKnown RBP13.55□□□□□ -0.24
GTF3C2-202ENST00000359541 FHOD3Q2V2M9 1422 aa13.55□□□□□ -0.24
GTF3C2-202ENST00000359541 GAPVD1Q14C86 1478 aa13.55□□□□□ -0.24
GTF3C2-202ENST00000359541 AQRO60306 1485 aaKnown RBP eCLIP13.54□□□□□ -0.248e-7■■■■□ 25.6
GTF3C2-202ENST00000359541 CASKIN1Q8WXD9 1431 aa13.54□□□□□ -0.24
GTF3C2-202ENST00000359541 TDRD9Q8NDG6 1382 aaKnown RBP13.53□□□□□ -0.24
GTF3C2-202ENST00000359541 PCF11O94913 1555 aaKnown RBP13.52□□□□□ -0.25
GTF3C2-202ENST00000359541 CTTNBP2Q8WZ74 1663 aa13.51□□□□□ -0.25
GTF3C2-202ENST00000359541 CFAP43Q8NDM7 1665 aa13.5□□□□□ -0.25
GTF3C2-202ENST00000359541 SETD5Q9C0A6 1442 aa13.5□□□□□ -0.25
GTF3C2-202ENST00000359541 MTUS2Q5JR59 1369 aa13.5□□□□□ -0.25
GTF3C2-202ENST00000359541 RAB3GAP2Q9H2M9 1393 aa13.49□□□□□ -0.25
GTF3C2-202ENST00000359541 PHLDB1Q86UU1 1377 aa13.47□□□□□ -0.25
GTF3C2-202ENST00000359541 ABCA5Q8WWZ7 1642 aa13.47□□□□□ -0.25
GTF3C2-202ENST00000359541 WDR97A6NE52 1622 aa13.47□□□□□ -0.25
GTF3C2-202ENST00000359541 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.45□□□□□ -0.26
GTF3C2-202ENST00000359541 NEUROD1Q13562 356 aa13.44□□□□□ -0.26
GTF3C2-202ENST00000359541 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
GTF3C2-202ENST00000359541 YTHDC1Q96MU7 727 aaKnown RBP13.42□□□□□ -0.26
GTF3C2-202ENST00000359541 KIF21AQ7Z4S6 1674 aa13.41□□□□□ -0.26
GTF3C2-202ENST00000359541 MIER1Q8N108 512 aa13.41□□□□□ -0.26
GTF3C2-202ENST00000359541 THOC2Q8NI27 1593 aaKnown RBP13.4□□□□□ -0.26
GTF3C2-202ENST00000359541 TIMELESSQ9UNS1 1208 aa13.4□□□□□ -0.26
GTF3C2-202ENST00000359541 SAMD9Q5K651 1589 aa13.38□□□□□ -0.27
GTF3C2-202ENST00000359541 FGD6Q6ZV73 1430 aa13.38□□□□□ -0.27
GTF3C2-202ENST00000359541 CCDC18Q5T9S5 1454 aa13.38□□□□□ -0.27
GTF3C2-202ENST00000359541 GRIN2BQ13224 1484 aa13.37□□□□□ -0.27
GTF3C2-202ENST00000359541 SNAPC4Q5SXM2 1469 aa13.37□□□□□ -0.27
GTF3C2-202ENST00000359541 PLPPR3Q6T4P5 718 aa13.36□□□□□ -0.27
GTF3C2-202ENST00000359541 TARBP1Q13395 1621 aaKnown RBP13.36□□□□□ -0.27
GTF3C2-202ENST00000359541 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
GTF3C2-202ENST00000359541 EHBP1L1Q8N3D4 1523 aa13.36□□□□□ -0.27
GTF3C2-202ENST00000359541 IFT140Q96RY7 1462 aa13.35□□□□□ -0.27
GTF3C2-202ENST00000359541 MYOM3Q5VTT5 1437 aa13.34□□□□□ -0.27
GTF3C2-202ENST00000359541 IQGAP2Q13576 1575 aa13.33□□□□□ -0.28
GTF3C2-202ENST00000359541 NCOA2Q15596 1464 aa13.33□□□□□ -0.28
GTF3C2-202ENST00000359541 SUPT6HQ7KZ85 1726 aaKnown RBP13.32□□□□□ -0.28
GTF3C2-202ENST00000359541 HECW1Q76N89 1606 aa13.32□□□□□ -0.28
GTF3C2-202ENST00000359541 PBRM1Q86U86 1689 aa13.31□□□□□ -0.28
GTF3C2-202ENST00000359541 ADAMTS12P58397 1594 aa13.3□□□□□ -0.28
GTF3C2-202ENST00000359541 MAPKBP1O60336 1514 aa13.3□□□□□ -0.28
GTF3C2-202ENST00000359541 CDK11AQ9UQ88 783 aaPredicted RBP13.29□□□□□ -0.28
GTF3C2-202ENST00000359541 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
GTF3C2-202ENST00000359541 TONSLQ96HA7 1378 aa13.29□□□□□ -0.28
GTF3C2-202ENST00000359541 HFM1A2PYH4 1435 aa13.27□□□□□ -0.28
GTF3C2-202ENST00000359541 SIN3AQ96ST3 1273 aa13.26□□□□□ -0.29
GTF3C2-202ENST00000359541 WDR62O43379 1518 aa13.25□□□□□ -0.29
GTF3C2-202ENST00000359541 UACAQ9BZF9 1416 aa13.25□□□□□ -0.29
GTF3C2-202ENST00000359541 KIAA0586Q9BVV6 1533 aa13.24□□□□□ -0.29
GTF3C2-202ENST00000359541 UGGT2Q9NYU1 1516 aa13.23□□□□□ -0.29
GTF3C2-202ENST00000359541 EPRSP07814 1512 aaKnown RBP13.23□□□□□ -0.29
GTF3C2-202ENST00000359541 CHMP7Q8WUX9 453 aaPredicted RBP13.22□□□□□ -0.29
GTF3C2-202ENST00000359541 MIA2Q96PC5 1412 aa13.22□□□□□ -0.29
GTF3C2-202ENST00000359541 PTPN23Q9H3S7 1636 aa13.22□□□□□ -0.29
GTF3C2-202ENST00000359541 TRIM52Q96A61 297 aa13.21□□□□□ -0.29
GTF3C2-202ENST00000359541 PPP1R15AO75807 674 aaPredicted RBP13.2□□□□□ -0.3
GTF3C2-202ENST00000359541 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
GTF3C2-202ENST00000359541 NAIPQ13075 1403 aa13.19□□□□□ -0.3
GTF3C2-202ENST00000359541 GRIN2AQ12879 1464 aa13.18□□□□□ -0.3
GTF3C2-202ENST00000359541 ARID3CA6NKF2 412 aa13.18□□□□□ -0.3
GTF3C2-202ENST00000359541 TCOF1Q13428 1488 aaKnown RBP13.18□□□□□ -0.3
GTF3C2-202ENST00000359541 MAGI1Q96QZ7 1491 aaPredicted RBP13.18□□□□□ -0.3
GTF3C2-202ENST00000359541 AKNAQ7Z591 1439 aa13.18□□□□□ -0.3
GTF3C2-202ENST00000359541 RRP7BPQ9NSQ0 103 aa13.17□□□□□ -0.3
GTF3C2-202ENST00000359541 CHIC2Q9UKJ5 165 aa13.17□□□□□ -0.3
GTF3C2-202ENST00000359541 ARHGEF11O15085 1522 aa13.17□□□□□ -0.3
GTF3C2-202ENST00000359541 FBLN2P98095 1184 aa13.17□□□□□ -0.3
GTF3C2-202ENST00000359541 CARMIL2Q6F5E8 1435 aa13.17□□□□□ -0.3
GTF3C2-202ENST00000359541 PTPRKQ15262 1439 aa13.15□□□□□ -0.3
GTF3C2-202ENST00000359541 CDK13Q14004 1512 aaKnown RBP13.15□□□□□ -0.3
GTF3C2-202ENST00000359541 LRRIQ1Q96JM4 1722 aa13.15□□□□□ -0.3
GTF3C2-202ENST00000359541 KIAA0556O60303 1618 aa13.15□□□□□ -0.3
GTF3C2-202ENST00000359541 EIF4G3O43432 1585 aaKnown RBP13.14□□□□□ -0.31
GTF3C2-202ENST00000359541 DDX10Q13206 875 aaKnown RBP13.14□□□□□ -0.31
GTF3C2-202ENST00000359541 ANP32CO43423 234 aa13.13□□□□□ -0.31
GTF3C2-202ENST00000359541 MAGI3Q5TCQ9 1506 aa13.13□□□□□ -0.31
GTF3C2-202ENST00000359541 SYNJ2O15056 1496 aa13.13□□□□□ -0.31
GTF3C2-202ENST00000359541 RAPGEF6Q8TEU7 1601 aa13.1□□□□□ -0.31
GTF3C2-202ENST00000359541 DISP1Q96F81 1524 aa13.1□□□□□ -0.31
GTF3C2-202ENST00000359541 ROCK1Q13464 1354 aa13.09□□□□□ -0.31
GTF3C2-202ENST00000359541 CFDP1Q9UEE9 299 aaPredicted RBP13.08□□□□□ -0.31
GTF3C2-202ENST00000359541 GCC2Q8IWJ2 1684 aa13.08□□□□□ -0.32
GTF3C2-202ENST00000359541 TROQ12816 1431 aaPredicted RBP13.08□□□□□ -0.32
GTF3C2-202ENST00000359541 RTN4Q9NQC3 1192 aaKnown RBP13.07□□□□□ -0.32
GTF3C2-202ENST00000359541 NUP153P49790 1475 aaKnown RBP13.07□□□□□ -0.32
GTF3C2-202ENST00000359541 JPH4Q96JJ6 628 aa13.07□□□□□ -0.32
GTF3C2-202ENST00000359541 MPHOSPH9Q99550 1183 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms