RNA–Protein interactions for RNA: ENST00000358511.10

COL6A6-201, Transcript of collagen type VI alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL6A6, Length 9,581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6-201ENST00000358511 TULP1O00294 542 aaPredicted RBP11.52□□□□□ -0.57
COL6A6-201ENST00000358511 PTMAP06454 111 aaKnown RBP11.52□□□□□ -0.57
COL6A6-201ENST00000358511 WDR43Q15061 677 aaKnown RBP eCLIP11.52□□□□□ -0.57
COL6A6-201ENST00000358511 L1TD1Q5T7N2 865 aaKnown RBP11.5□□□□□ -0.57
COL6A6-201ENST00000358511 MYH16Q9H6N6 1097 aa11.49□□□□□ -0.57
COL6A6-201ENST00000358511 CLIP1P30622 1438 aa11.49□□□□□ -0.57
COL6A6-201ENST00000358511 CEP162Q5TB80 1403 aa11.48□□□□□ -0.57
COL6A6-201ENST00000358511 EIF4G2P78344 907 aaKnown RBP eCLIP11.47□□□□□ -0.57
COL6A6-201ENST00000358511 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.45□□□□□ -0.58
COL6A6-201ENST00000358511 GOLGA3Q08378 1498 aa11.44□□□□□ -0.58
COL6A6-201ENST00000358511 A0A0G2JS52 829 aa11.44□□□□□ -0.58
COL6A6-201ENST00000358511 MSNP26038 577 aaKnown RBP11.43□□□□□ -0.58
COL6A6-201ENST00000358511 CHAF1AQ13111 956 aaPredicted RBP11.43□□□□□ -0.58
COL6A6-201ENST00000358511 EEA1Q15075 1411 aa11.43□□□□□ -0.58
COL6A6-201ENST00000358511 HIRIP3Q9BW71 556 aaPredicted RBP11.41□□□□□ -0.58
COL6A6-201ENST00000358511 P3H3Q8IVL6 736 aa11.4□□□□□ -0.59
COL6A6-201ENST00000358511 TSHZ2Q9NRE2 1034 aa11.4□□□□□ -0.59
COL6A6-201ENST00000358511 B4GALNT3Q6L9W6 998 aa11.39□□□□□ -0.59
COL6A6-201ENST00000358511 CASC1Q6TDU7 716 aa11.38□□□□□ -0.59
COL6A6-201ENST00000358511 RSPH6AQ9H0K4 717 aa11.38□□□□□ -0.59
COL6A6-201ENST00000358511 PNNQ9H307 717 aaKnown RBP11.37□□□□□ -0.59
COL6A6-201ENST00000358511 PLPPR3Q6T4P5 718 aa11.36□□□□□ -0.59
COL6A6-201ENST00000358511 ZRSR1Q15695 479 aaKnown RBP11.35□□□□□ -0.59
COL6A6-201ENST00000358511 CCER2I3L3R5 266 aa11.35□□□□□ -0.59
COL6A6-201ENST00000358511 GOLGA6L6A8MZA4 724 aa11.34□□□□□ -0.59
COL6A6-201ENST00000358511 ZNF777Q9ULD5 760 aaPredicted RBP11.34□□□□□ -0.59
COL6A6-201ENST00000358511 MTUS2Q5JR59 1369 aa11.33□□□□□ -0.6
COL6A6-201ENST00000358511 FTSJ3Q8IY81 847 aaKnown RBP11.33□□□□□ -0.6
COL6A6-201ENST00000358511 USP35Q9P2H5 1018 aa11.32□□□□□ -0.6
COL6A6-201ENST00000358511 RGS3P49796 1198 aa11.32□□□□□ -0.6
COL6A6-201ENST00000358511 HSP90AB1P08238 724 aaKnown RBP11.32□□□□□ -0.6
COL6A6-201ENST00000358511 PTMSP20962 102 aa11.32□□□□□ -0.6
COL6A6-201ENST00000358511 HSP90AA2PQ14568 343 aaPredicted RBP11.32□□□□□ -0.6
COL6A6-201ENST00000358511 HSCBQ8IWL3 235 aa11.31□□□□□ -0.6
COL6A6-201ENST00000358511 IPO9Q96P70 1041 aaKnown RBP11.31□□□□□ -0.6
COL6A6-201ENST00000358511 NRDCO43847 1150 aa11.3□□□□□ -0.6
COL6A6-201ENST00000358511 CEP164Q9UPV0 1460 aa11.3□□□□□ -0.6
COL6A6-201ENST00000358511 ARID4BQ4LE39 1312 aaPredicted RBP11.3□□□□□ -0.6
COL6A6-201ENST00000358511 ABCC9O60706 1549 aa11.29□□□□□ -0.6
COL6A6-201ENST00000358511 RB1CC1Q8TDY2 1594 aa11.29□□□□□ -0.6
COL6A6-201ENST00000358511 ARID3CA6NKF2 412 aa11.28□□□□□ -0.6
COL6A6-201ENST00000358511 PRM3Q9NNZ6 103 aa11.28□□□□□ -0.6
COL6A6-201ENST00000358511 TNIKQ9UKE5 1360 aa11.28□□□□□ -0.6
COL6A6-201ENST00000358511 RSF1Q96T23 1441 aaPredicted RBP11.27□□□□□ -0.61
COL6A6-201ENST00000358511 CHIC2Q9UKJ5 165 aa11.26□□□□□ -0.61
COL6A6-201ENST00000358511 AMER1Q5JTC6 1135 aaPredicted RBP11.25□□□□□ -0.61
COL6A6-201ENST00000358511 TCERG1O14776 1098 aaKnown RBP11.25□□□□□ -0.61
COL6A6-201ENST00000358511 GBP4Q96PP9 640 aa11.24□□□□□ -0.61
COL6A6-201ENST00000358511 KDM2AQ9Y2K7 1162 aa11.24□□□□□ -0.61
COL6A6-201ENST00000358511 PLCB2Q00722 1185 aa11.24□□□□□ -0.61
COL6A6-201ENST00000358511 GOLGA6L3A6NEY3 463 aa11.23□□□□□ -0.61
COL6A6-201ENST00000358511 KIAA2012Q0VF49 1180 aa11.23□□□□□ -0.61
COL6A6-201ENST00000358511 KNSTRNQ9Y448 316 aa11.23□□□□□ -0.61
COL6A6-201ENST00000358511 CHMP4BQ9H444 224 aaKnown RBP11.23□□□□□ -0.61
COL6A6-201ENST00000358511 FANCIQ9NVI1 1328 aa11.22□□□□□ -0.61
COL6A6-201ENST00000358511 KRI1Q8N9T8 703 aaKnown RBP11.22□□□□□ -0.61
COL6A6-201ENST00000358511 MS4A1P11836 297 aa11.21□□□□□ -0.61
COL6A6-201ENST00000358511 CDCA8Q53HL2 280 aa11.21□□□□□ -0.62
COL6A6-201ENST00000358511 TNNT3P45378 269 aaPredicted RBP11.2□□□□□ -0.62
COL6A6-201ENST00000358511 PABPN1Q86U42 306 aaKnown RBP eCLIP11.2□□□□□ -0.62
COL6A6-201ENST00000358511 TIMELESSQ9UNS1 1208 aa11.2□□□□□ -0.62
COL6A6-201ENST00000358511 CCNB3Q8WWL7 1395 aa11.2□□□□□ -0.62
COL6A6-201ENST00000358511 VSIG10Q8N0Z9 540 aa11.19□□□□□ -0.62
COL6A6-201ENST00000358511 CFAP53Q96M91 514 aa11.19□□□□□ -0.62
COL6A6-201ENST00000358511 CLSTN1O94985 981 aa11.18□□□□□ -0.62
COL6A6-201ENST00000358511 ARID3AQ99856 593 aa11.18□□□□□ -0.62
COL6A6-201ENST00000358511 TPRNQ4KMQ1 711 aa11.18□□□□□ -0.62
COL6A6-201ENST00000358511 CFAP44Q96MT7 982 aa11.18□□□□□ -0.62
COL6A6-201ENST00000358511 GZF1Q9H116 711 aaPredicted RBP11.18□□□□□ -0.62
COL6A6-201ENST00000358511 FBLN2P98095 1184 aa11.17□□□□□ -0.62
COL6A6-201ENST00000358511 DRC7Q8IY82 874 aa11.17□□□□□ -0.62
COL6A6-201ENST00000358511 GSE1Q14687 1217 aa11.17□□□□□ -0.62
COL6A6-201ENST00000358511 SYAP1Q96A49 352 aaPredicted RBP11.16□□□□□ -0.62
COL6A6-201ENST00000358511 RRP7BPQ9NSQ0 103 aa11.16□□□□□ -0.62
COL6A6-201ENST00000358511 SENP3-EIF4A1A0A087X0R7 540 aa11.16□□□□□ -0.62
COL6A6-201ENST00000358511 SLKQ9H2G2 1235 aaPredicted RBP11.15□□□□□ -0.62
COL6A6-201ENST00000358511 SPRYD3Q8NCJ5 442 aa11.15□□□□□ -0.63
COL6A6-201ENST00000358511 FRAT1Q92837 279 aaPredicted RBP11.15□□□□□ -0.63
COL6A6-201ENST00000358511 GOLGA6L4A6NEF3 574 aa11.14□□□□□ -0.63
COL6A6-201ENST00000358511 CARD11Q9BXL7 1154 aa11.14□□□□□ -0.63
COL6A6-201ENST00000358511 TSPY4P0CV99 314 aa11.13□□□□□ -0.63
COL6A6-201ENST00000358511 TSPY10P0CW01 314 aa11.13□□□□□ -0.63
COL6A6-201ENST00000358511 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.13□□□□□ -0.63
COL6A6-201ENST00000358511 CHGAP10645 457 aaKnown RBP11.13□□□□□ -0.63
COL6A6-201ENST00000358511 RCAN3Q9UKA8 241 aa11.12□□□□□ -0.63
COL6A6-201ENST00000358511 ESF1Q9H501 851 aaKnown RBP11.12□□□□□ -0.63
COL6A6-201ENST00000358511 MCCP23508 829 aa11.12□□□□□ -0.63
COL6A6-201ENST00000358511 SETD5Q9C0A6 1442 aa11.12□□□□□ -0.63
COL6A6-201ENST00000358511 DDX11L8A8MPP1 907 aa11.11□□□□□ -0.63
COL6A6-201ENST00000358511 FHAD1B1AJZ9 1412 aa11.11□□□□□ -0.63
COL6A6-201ENST00000358511 WRNQ14191 1432 aaPredicted RBP eCLIP11.11□□□□□ -0.63
COL6A6-201ENST00000358511 SIN3AQ96ST3 1273 aa11.11□□□□□ -0.63
COL6A6-201ENST00000358511 VPS8Q8N3P4 1428 aa11.1□□□□□ -0.63
COL6A6-201ENST00000358511 PHF14O94880 888 aa11.09□□□□□ -0.63
COL6A6-201ENST00000358511 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
COL6A6-201ENST00000358511 STAG3Q9UJ98 1225 aa11.09□□□□□ -0.63
COL6A6-201ENST00000358511 MAPK8IP3Q9UPT6 1336 aa11.09□□□□□ -0.63
COL6A6-201ENST00000358511 KTN1Q86UP2 1357 aaKnown RBP11.08□□□□□ -0.64
COL6A6-201ENST00000358511 ARHGAP35Q9NRY4 1499 aa11.07□□□□□ -0.64
COL6A6-201ENST00000358511 NUDCQ9Y266 331 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms