RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ARHGAP35Q9NRY4 1499 aa29.5■■■□□ 2.31
CLN3-204ENST00000357857 CHMP7Q8WUX9 453 aaPredicted RBP29.49■■■□□ 2.31
CLN3-204ENST00000357857 ARAP1Q96P48 1450 aa29.48■■■□□ 2.31
CLN3-204ENST00000357857 VPS8Q8N3P4 1428 aa29.44■■■□□ 2.3
CLN3-204ENST00000357857 IQGAP2Q13576 1575 aa29.44■■■□□ 2.3
CLN3-204ENST00000357857 EFCAB5A4FU69 1503 aa29.43■■■□□ 2.3
CLN3-204ENST00000357857 FBLN2P98095 1184 aa29.42■■■□□ 2.3
CLN3-204ENST00000357857 CEP170Q5SW79 1584 aa29.39■■■□□ 2.3
CLN3-204ENST00000357857 CHD1O14646 1710 aa29.39■■■□□ 2.29
CLN3-204ENST00000357857 KIAA0586Q9BVV6 1533 aa29.38■■■□□ 2.29
CLN3-204ENST00000357857 SAMD9Q5K651 1589 aa29.35■■■□□ 2.29
CLN3-204ENST00000357857 NUP160Q12769 1436 aa29.35■■■□□ 2.29
CLN3-204ENST00000357857 UGGT2Q9NYU1 1516 aa29.29■■■□□ 2.28
CLN3-204ENST00000357857 FHOD3Q2V2M9 1422 aa29.26■■■□□ 2.28
CLN3-204ENST00000357857 P3H3Q8IVL6 736 aa29.26■■■□□ 2.27
CLN3-204ENST00000357857 KIAA0556O60303 1618 aa29.14■■■□□ 2.26
CLN3-204ENST00000357857 FMN1Q68DA7 1419 aa29.14■■■□□ 2.26
CLN3-204ENST00000357857 APLP2Q06481 763 aa29.13■■■□□ 2.25
CLN3-204ENST00000357857 PPARGC1BQ86YN6 1023 aaKnown RBP29.13■■■□□ 2.25
CLN3-204ENST00000357857 DISP1Q96F81 1524 aa29.12■■■□□ 2.25
CLN3-204ENST00000357857 PCF11O94913 1555 aaKnown RBP29.12■■■□□ 2.25
CLN3-204ENST00000357857 JPH4Q96JJ6 628 aa29.09■■■□□ 2.25
CLN3-204ENST00000357857 CASKIN1Q8WXD9 1431 aa29.06■■■□□ 2.24
CLN3-204ENST00000357857 FYCO1Q9BQS8 1478 aa29.06■■■□□ 2.24
CLN3-204ENST00000357857 CARMIL2Q6F5E8 1435 aa29.03■■■□□ 2.24
CLN3-204ENST00000357857 SHROOM2Q13796 1616 aa29.01■■■□□ 2.24
CLN3-204ENST00000357857 CLASP1Q7Z460 1538 aa29.01■■■□□ 2.23
CLN3-204ENST00000357857 TRIM26Q12899 539 aaPredicted RBP29■■■□□ 2.23
CLN3-204ENST00000357857 MAP3K1Q13233 1512 aa28.99■■■□□ 2.23
CLN3-204ENST00000357857 TIAM1Q13009 1591 aa28.97■■■□□ 2.23
CLN3-204ENST00000357857 CFAP43Q8NDM7 1665 aa28.96■■■□□ 2.23
CLN3-204ENST00000357857 TTBK1Q5TCY1 1321 aaPredicted RBP28.95■■■□□ 2.23
CLN3-204ENST00000357857 PRG4Q92954 1404 aaPredicted RBP28.94■■■□□ 2.22
CLN3-204ENST00000357857 ATP1B4Q9UN42 357 aaPredicted RBP28.94■■■□□ 2.22
CLN3-204ENST00000357857 PCGF6Q9BYE7 350 aa28.91■■■□□ 2.22
CLN3-204ENST00000357857 LRRIQ1Q96JM4 1722 aa28.91■■■□□ 2.22
CLN3-204ENST00000357857 HECW1Q76N89 1606 aa28.9■■■□□ 2.22
CLN3-204ENST00000357857 KANK4Q5T7N3 995 aaPredicted RBP28.86■■■□□ 2.21
CLN3-204ENST00000357857 RAPGEF6Q8TEU7 1601 aa28.85■■■□□ 2.21
CLN3-204ENST00000357857 DNAJC5Q9H3Z4 198 aa28.83■■■□□ 2.21
CLN3-204ENST00000357857 CCDC18Q5T9S5 1454 aa28.81■■■□□ 2.2
CLN3-204ENST00000357857 LRRC9Q6ZRR7 1453 aa28.81■■■□□ 2.2
CLN3-204ENST00000357857 ERCC6L2Q5T890 1561 aa28.78■■■□□ 2.2
CLN3-204ENST00000357857 OSCARQ8IYS5 282 aa28.77■■■□□ 2.2
CLN3-204ENST00000357857 EPRSP07814 1512 aaKnown RBP28.75■■■□□ 2.19
CLN3-204ENST00000357857 PLB1Q6P1J6 1458 aa28.74■■■□□ 2.19
CLN3-204ENST00000357857 PTPRGP23470 1445 aa28.74■■■□□ 2.19
CLN3-204ENST00000357857 ABCA8O94911 1581 aa28.73■■■□□ 2.19
CLN3-204ENST00000357857 NUP153P49790 1475 aaKnown RBP28.73■■■□□ 2.19
CLN3-204ENST00000357857 CDK13Q14004 1512 aaKnown RBP28.69■■■□□ 2.18
CLN3-204ENST00000357857 MTUS2Q5JR59 1369 aa28.65■■■□□ 2.18
CLN3-204ENST00000357857 EHBP1L1Q8N3D4 1523 aa28.64■■■□□ 2.18
CLN3-204ENST00000357857 ARID3CA6NKF2 412 aa28.61■■■□□ 2.17
CLN3-204ENST00000357857 MAGI3Q5TCQ9 1506 aa28.61■■■□□ 2.17
CLN3-204ENST00000357857 UACAQ9BZF9 1416 aa28.58■■■□□ 2.17
CLN3-204ENST00000357857 SUPT6HQ7KZ85 1726 aaKnown RBP28.58■■■□□ 2.17
CLN3-204ENST00000357857 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.52■■■□□ 2.16
CLN3-204ENST00000357857 HNRNPUL2Q1KMD3 747 aaKnown RBP28.52■■■□□ 2.16
CLN3-204ENST00000357857 RRBP1Q9P2E9 1410 aaKnown RBP28.52■■■□□ 2.16
CLN3-204ENST00000357857 ABCC2Q92887 1545 aa28.52■■■□□ 2.16
CLN3-204ENST00000357857 PHLDB1Q86UU1 1377 aa28.51■■■□□ 2.15
CLN3-204ENST00000357857 CDK11AQ9UQ88 783 aaPredicted RBP28.51■■■□□ 2.15
CLN3-204ENST00000357857 ATP10BO94823 1461 aa28.51■■■□□ 2.15
CLN3-204ENST00000357857 NCOA2Q15596 1464 aa28.5■■■□□ 2.15
CLN3-204ENST00000357857 ARHGEF11O15085 1522 aa28.46■■■□□ 2.15
CLN3-204ENST00000357857 UHRF1BP1LA0JNW5 1464 aa28.46■■■□□ 2.15
CLN3-204ENST00000357857 CCNB3Q8WWL7 1395 aa28.44■■■□□ 2.14
CLN3-204ENST00000357857 TROQ12816 1431 aaPredicted RBP28.44■■■□□ 2.14
CLN3-204ENST00000357857 ADCY10Q96PN6 1610 aa28.4■■■□□ 2.14
CLN3-204ENST00000357857 MYOM3Q5VTT5 1437 aa28.37■■■□□ 2.13
CLN3-204ENST00000357857 PLEKHD1A6NEE1 506 aa28.36■■■□□ 2.13
CLN3-204ENST00000357857 ZCCHC11Q5TAX3 1644 aaKnown RBP28.35■■■□□ 2.13
CLN3-204ENST00000357857 FGD6Q6ZV73 1430 aa28.34■■■□□ 2.13
CLN3-204ENST00000357857 KDM5BQ9UGL1 1544 aa28.33■■■□□ 2.13
CLN3-204ENST00000357857 KIF14Q15058 1648 aa28.32■■■□□ 2.12
CLN3-204ENST00000357857 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.27■■■□□ 2.12
CLN3-204ENST00000357857 FAM50AQ14320 339 aaKnown RBP28.26■■■□□ 2.11
CLN3-204ENST00000357857 PTPN23Q9H3S7 1636 aa28.25■■■□□ 2.11
CLN3-204ENST00000357857 ITSN2Q9NZM3 1697 aa28.24■■■□□ 2.11
CLN3-204ENST00000357857 MIA2Q96PC5 1412 aa28.23■■■□□ 2.11
CLN3-204ENST00000357857 RIMBP3CA6NJZ7 1639 aa28.23■■■□□ 2.11
CLN3-204ENST00000357857 RIMBP3BA6NNM3 1639 aa28.23■■■□□ 2.11
CLN3-204ENST00000357857 RIMBP3Q9UFD9 1639 aa28.23■■■□□ 2.11
CLN3-204ENST00000357857 ABCC10Q5T3U5 1492 aa28.2■■■□□ 2.11
CLN3-204ENST00000357857 TCOF1Q13428 1488 aaKnown RBP28.19■■■□□ 2.1
CLN3-204ENST00000357857 CDC42BPAQ5VT25 1732 aa28.17■■■□□ 2.1
CLN3-204ENST00000357857 GPATCH8Q9UKJ3 1502 aaKnown RBP28.16■■■□□ 2.1
CLN3-204ENST00000357857 ITGAEP38570 1179 aa28.15■■■□□ 2.1
CLN3-204ENST00000357857 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.09■■■□□ 2.09
CLN3-204ENST00000357857 TTC37Q6PGP7 1564 aa28.09■■■□□ 2.09
CLN3-204ENST00000357857 WDR7Q9Y4E6 1490 aa28.08■■■□□ 2.09
CLN3-204ENST00000357857 NPM1P06748 294 aaKnown RBP eCLIP28.07■■■□□ 2.08
CLN3-204ENST00000357857 CFDP1Q9UEE9 299 aaPredicted RBP28.07■■■□□ 2.08
CLN3-204ENST00000357857 PREX2Q70Z35 1606 aa28.06■■■□□ 2.08
CLN3-204ENST00000357857 KCNH8Q96L42 1107 aa28.05■■■□□ 2.08
CLN3-204ENST00000357857 MYO5CQ9NQX4 1742 aa28.04■■■□□ 2.08
CLN3-204ENST00000357857 CDC42BPBQ9Y5S2 1711 aa28.04■■■□□ 2.08
CLN3-204ENST00000357857 ASXL2Q76L83 1435 aa28.03■■■□□ 2.08
CLN3-204ENST00000357857 CAMSAP2Q08AD1 1489 aa28.03■■■□□ 2.08
CLN3-204ENST00000357857 CYB5RLQ6IPT4 315 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms