RNA–Protein interactions for RNA: ENST00000357783.6

PHTF1-201, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 1 (best) BASIC

Gene PHTF1, Length 2,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-201ENST00000357783 CTTNBP2Q8WZ74 1663 aa23.55■■□□□ 1.36
PHTF1-201ENST00000357783 PCF11O94913 1555 aaKnown RBP23.54■■□□□ 1.36
PHTF1-201ENST00000357783 TDRD9Q8NDG6 1382 aaKnown RBP23.54■■□□□ 1.36
PHTF1-201ENST00000357783 ZNF316A6NFI3 1004 aaPredicted RBP23.53■■□□□ 1.36
PHTF1-201ENST00000357783 FHOD3Q2V2M9 1422 aa23.53■■□□□ 1.36
PHTF1-201ENST00000357783 ABCA5Q8WWZ7 1642 aa23.52■■□□□ 1.36
PHTF1-201ENST00000357783 LRRC9Q6ZRR7 1453 aa23.5■■□□□ 1.35
PHTF1-201ENST00000357783 DHX57Q6P158 1386 aaKnown RBP23.5■■□□□ 1.35
PHTF1-201ENST00000357783 EFCAB5A4FU69 1503 aa23.49■■□□□ 1.35
PHTF1-201ENST00000357783 CFAP43Q8NDM7 1665 aa23.48■■□□□ 1.35
PHTF1-201ENST00000357783 ITGAEP38570 1179 aa23.48■■□□□ 1.35
PHTF1-201ENST00000357783 ATP1B4Q9UN42 357 aaPredicted RBP23.48■■□□□ 1.35
PHTF1-201ENST00000357783 GAPVD1Q14C86 1478 aa23.48■■□□□ 1.35
PHTF1-201ENST00000357783 FYCO1Q9BQS8 1478 aa23.41■■□□□ 1.34
PHTF1-201ENST00000357783 CLSPNQ9HAW4 1339 aa23.41■■□□□ 1.34
PHTF1-201ENST00000357783 PHLDB1Q86UU1 1377 aa23.41■■□□□ 1.34
PHTF1-201ENST00000357783 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.33
PHTF1-201ENST00000357783 CASKIN1Q8WXD9 1431 aa23.38■■□□□ 1.33
PHTF1-201ENST00000357783 AQRO60306 1485 aaKnown RBP eCLIP23.36■■□□□ 1.33
PHTF1-201ENST00000357783 FMN1Q68DA7 1419 aa23.33■■□□□ 1.32
PHTF1-201ENST00000357783 FAM50AQ14320 339 aaKnown RBP23.32■■□□□ 1.32
PHTF1-201ENST00000357783 SAMD9Q5K651 1589 aa23.31■■□□□ 1.32
PHTF1-201ENST00000357783 RAB3GAP2Q9H2M9 1393 aa23.3■■□□□ 1.32
PHTF1-201ENST00000357783 SNAPC4Q5SXM2 1469 aa23.29■■□□□ 1.32
PHTF1-201ENST00000357783 PBRM1Q86U86 1689 aa23.28■■□□□ 1.32
PHTF1-201ENST00000357783 PELP1Q8IZL8 1130 aaKnown RBP23.28■■□□□ 1.32
PHTF1-201ENST00000357783 SCAF1Q9H7N4 1312 aaKnown RBP23.27■■□□□ 1.32
PHTF1-201ENST00000357783 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
PHTF1-201ENST00000357783 SETD5Q9C0A6 1442 aa23.23■■□□□ 1.31
PHTF1-201ENST00000357783 LRRIQ1Q96JM4 1722 aa23.21■■□□□ 1.31
PHTF1-201ENST00000357783 ACIN1Q9UKV3 1341 aaKnown RBP23.19■■□□□ 1.3
PHTF1-201ENST00000357783 MTUS2Q5JR59 1369 aa23.18■■□□□ 1.3
PHTF1-201ENST00000357783 NEUROD1Q13562 356 aa23.18■■□□□ 1.3
PHTF1-201ENST00000357783 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
PHTF1-201ENST00000357783 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
PHTF1-201ENST00000357783 MAPKBP1O60336 1514 aa23.16■■□□□ 1.3
PHTF1-201ENST00000357783 MIER1Q8N108 512 aa23.15■■□□□ 1.3
PHTF1-201ENST00000357783 CENPBP07199 599 aaPredicted RBP23.14■■□□□ 1.29
PHTF1-201ENST00000357783 FGD6Q6ZV73 1430 aa23.13■■□□□ 1.29
PHTF1-201ENST00000357783 IQGAP2Q13576 1575 aa23.12■■□□□ 1.29
PHTF1-201ENST00000357783 THOC2Q8NI27 1593 aaKnown RBP23.11■■□□□ 1.29
PHTF1-201ENST00000357783 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.11■■□□□ 1.29
PHTF1-201ENST00000357783 ZNF608Q9ULD9 1512 aaPredicted RBP23.1■■□□□ 1.29
PHTF1-201ENST00000357783 IFT140Q96RY7 1462 aa23.09■■□□□ 1.29
PHTF1-201ENST00000357783 WDR62O43379 1518 aa23.08■■□□□ 1.29
PHTF1-201ENST00000357783 NCOA2Q15596 1464 aa23.07■■□□□ 1.28
PHTF1-201ENST00000357783 SUPT6HQ7KZ85 1726 aaKnown RBP23.05■■□□□ 1.28
PHTF1-201ENST00000357783 EHBP1L1Q8N3D4 1523 aa23.04■■□□□ 1.28
PHTF1-201ENST00000357783 YTHDC1Q96MU7 727 aaKnown RBP23.04■■□□□ 1.28
PHTF1-201ENST00000357783 MYOM3Q5VTT5 1437 aa23.01■■□□□ 1.27
PHTF1-201ENST00000357783 HECW1Q76N89 1606 aa23.01■■□□□ 1.27
PHTF1-201ENST00000357783 MAGI3Q5TCQ9 1506 aa23.01■■□□□ 1.27
PHTF1-201ENST00000357783 CCDC18Q5T9S5 1454 aa23.01■■□□□ 1.27
PHTF1-201ENST00000357783 ERCC6Q03468 1493 aa22.98■■□□□ 1.27
PHTF1-201ENST00000357783 SIN3AQ96ST3 1273 aa22.97■■□□□ 1.27
PHTF1-201ENST00000357783 PTPRKQ15262 1439 aa22.97■■□□□ 1.27
PHTF1-201ENST00000357783 UGGT2Q9NYU1 1516 aa22.96■■□□□ 1.27
PHTF1-201ENST00000357783 EIF4G3O43432 1585 aaKnown RBP22.96■■□□□ 1.27
PHTF1-201ENST00000357783 EPRSP07814 1512 aaKnown RBP22.94■■□□□ 1.26
PHTF1-201ENST00000357783 PTPN23Q9H3S7 1636 aa22.93■■□□□ 1.26
PHTF1-201ENST00000357783 ARHGEF11O15085 1522 aa22.93■■□□□ 1.26
PHTF1-201ENST00000357783 CDK13Q14004 1512 aaKnown RBP22.93■■□□□ 1.26
PHTF1-201ENST00000357783 ARID3CA6NKF2 412 aa22.92■■□□□ 1.26
PHTF1-201ENST00000357783 HFM1A2PYH4 1435 aa22.91■■□□□ 1.26
PHTF1-201ENST00000357783 GTF3C3Q9Y5Q9 886 aa22.9■■□□□ 1.26
PHTF1-201ENST00000357783 KIAA0586Q9BVV6 1533 aa22.89■■□□□ 1.26
PHTF1-201ENST00000357783 GRIN2AQ12879 1464 aa22.88■■□□□ 1.25
PHTF1-201ENST00000357783 KIAA0556O60303 1618 aa22.87■■□□□ 1.25
PHTF1-201ENST00000357783 DISP1Q96F81 1524 aa22.85■■□□□ 1.25
PHTF1-201ENST00000357783 NAIPQ13075 1403 aa22.85■■□□□ 1.25
PHTF1-201ENST00000357783 UACAQ9BZF9 1416 aa22.82■■□□□ 1.24
PHTF1-201ENST00000357783 TCOF1Q13428 1488 aaKnown RBP22.81■■□□□ 1.24
PHTF1-201ENST00000357783 MAGI1Q96QZ7 1491 aaPredicted RBP22.79■■□□□ 1.24
PHTF1-201ENST00000357783 TIMELESSQ9UNS1 1208 aa22.79■■□□□ 1.24
PHTF1-201ENST00000357783 CHIC2Q9UKJ5 165 aa22.78■■□□□ 1.24
PHTF1-201ENST00000357783 CHMP7Q8WUX9 453 aaPredicted RBP22.77■■□□□ 1.24
PHTF1-201ENST00000357783 RRP7BPQ9NSQ0 103 aa22.77■■□□□ 1.24
PHTF1-201ENST00000357783 RAPGEF6Q8TEU7 1601 aa22.75■■□□□ 1.23
PHTF1-201ENST00000357783 NUP153P49790 1475 aaKnown RBP22.75■■□□□ 1.23
PHTF1-201ENST00000357783 CEP170Q5SW79 1584 aa22.75■■□□□ 1.23
PHTF1-201ENST00000357783 SYNJ2O15056 1496 aa22.75■■□□□ 1.23
PHTF1-201ENST00000357783 FBLN2P98095 1184 aa22.74■■□□□ 1.23
PHTF1-201ENST00000357783 MIA2Q96PC5 1412 aa22.74■■□□□ 1.23
PHTF1-201ENST00000357783 GCC2Q8IWJ2 1684 aa22.73■■□□□ 1.23
PHTF1-201ENST00000357783 PPP1R15AO75807 674 aaPredicted RBP22.72■■□□□ 1.23
PHTF1-201ENST00000357783 TONSLQ96HA7 1378 aa22.71■■□□□ 1.23
PHTF1-201ENST00000357783 KDM6BO15054 1643 aa22.67■■□□□ 1.22
PHTF1-201ENST00000357783 AKNAQ7Z591 1439 aa22.66■■□□□ 1.22
PHTF1-201ENST00000357783 PLB1Q6P1J6 1458 aa22.64■■□□□ 1.21
PHTF1-201ENST00000357783 TRIM52Q96A61 297 aa22.64■■□□□ 1.21
PHTF1-201ENST00000357783 CDK11AQ9UQ88 783 aaPredicted RBP22.63■■□□□ 1.21
PHTF1-201ENST00000357783 HIRIP3Q9BW71 556 aaPredicted RBP22.63■■□□□ 1.21
PHTF1-201ENST00000357783 NUP160Q12769 1436 aa22.62■■□□□ 1.21
PHTF1-201ENST00000357783 DDX10Q13206 875 aaKnown RBP22.6■■□□□ 1.21
PHTF1-201ENST00000357783 DAPK1P53355 1430 aa22.6■■□□□ 1.21
PHTF1-201ENST00000357783 PRG4Q92954 1404 aaPredicted RBP22.6■■□□□ 1.21
PHTF1-201ENST00000357783 ZNF644Q9H582 1327 aaPredicted RBP22.6■■□□□ 1.21
PHTF1-201ENST00000357783 JPH4Q96JJ6 628 aa22.59■■□□□ 1.21
PHTF1-201ENST00000357783 CARMIL2Q6F5E8 1435 aa22.59■■□□□ 1.21
PHTF1-201ENST00000357783 DNMT1P26358 1616 aaKnown RBP22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms