RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 ERICH3Q5RHP9 1530 aa14.38□□□□□ -0.11
PTPRA-203ENST00000356147 KIF27Q86VH2 1401 aa14.38□□□□□ -0.11
PTPRA-203ENST00000356147 BCL11AQ9H165 835 aa14.37□□□□□ -0.11
PTPRA-203ENST00000356147 CUX1P39880 1505 aa14.36□□□□□ -0.11
PTPRA-203ENST00000356147 PPP1R15AO75807 674 aaPredicted RBP14.35□□□□□ -0.11
PTPRA-203ENST00000356147 PHLDB1Q86UU1 1377 aa14.35□□□□□ -0.11
PTPRA-203ENST00000356147 SETD5Q9C0A6 1442 aa14.35□□□□□ -0.11
PTPRA-203ENST00000356147 CUX2O14529 1486 aa14.34□□□□□ -0.11
PTPRA-203ENST00000356147 ANP32CO43423 234 aa14.33□□□□□ -0.11
PTPRA-203ENST00000356147 BIVM-ERCC5R4GMW8 1640 aa14.32□□□□□ -0.12
PTPRA-203ENST00000356147 MSH5O43196 834 aa14.26□□□□□ -0.13
PTPRA-203ENST00000356147 HNRNPUQ00839 825 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRA-203ENST00000356147 IGF1RP08069 1367 aa14.25□□□□□ -0.13
PTPRA-203ENST00000356147 LRRC9Q6ZRR7 1453 aa14.24□□□□□ -0.13
PTPRA-203ENST00000356147 TIAM1Q13009 1591 aa14.24□□□□□ -0.13
PTPRA-203ENST00000356147 CARMIL1Q5VZK9 1371 aa14.21□□□□□ -0.13
PTPRA-203ENST00000356147 CCER2I3L3R5 266 aa14.2□□□□□ -0.14
PTPRA-203ENST00000356147 TONSLQ96HA7 1378 aa14.2□□□□□ -0.14
PTPRA-203ENST00000356147 FHOD3Q2V2M9 1422 aa14.19□□□□□ -0.14
PTPRA-203ENST00000356147 CNGB1Q14028 1251 aaPredicted RBP14.17□□□□□ -0.14
PTPRA-203ENST00000356147 CCDC184Q52MB2 194 aa14.15□□□□□ -0.14
PTPRA-203ENST00000356147 SENP3-EIF4A1A0A087X0R7 540 aa14.13□□□□□ -0.15
PTPRA-203ENST00000356147 CFTRP13569 1480 aa14.13□□□□□ -0.15
PTPRA-203ENST00000356147 ERICH6Q7L0X2 663 aa14.12□□□□□ -0.15
PTPRA-203ENST00000356147 CHIC2Q9UKJ5 165 aa14.12□□□□□ -0.15
PTPRA-203ENST00000356147 CDK11AQ9UQ88 783 aaPredicted RBP14.12□□□□□ -0.15
PTPRA-203ENST00000356147 PCF11O94913 1555 aaKnown RBP14.12□□□□□ -0.15
PTPRA-203ENST00000356147 TIMELESSQ9UNS1 1208 aa14.1□□□□□ -0.15
PTPRA-203ENST00000356147 NCAPD3P42695 1498 aa14.1□□□□□ -0.15
PTPRA-203ENST00000356147 FAM9BQ8IZU0 186 aa14.1□□□□□ -0.15
PTPRA-203ENST00000356147 RRP7BPQ9NSQ0 103 aa14.09□□□□□ -0.15
PTPRA-203ENST00000356147 FGD5Q6ZNL6 1462 aa14.09□□□□□ -0.15
PTPRA-203ENST00000356147 FHAD1B1AJZ9 1412 aa14.09□□□□□ -0.15
PTPRA-203ENST00000356147 B4GALNT3Q6L9W6 998 aa14.08□□□□□ -0.15
PTPRA-203ENST00000356147 PTPRKQ15262 1439 aa14.08□□□□□ -0.16
PTPRA-203ENST00000356147 HSPA5P11021 654 aaKnown RBP14.07□□□□□ -0.16
PTPRA-203ENST00000356147 CCDC18Q5T9S5 1454 aa14.07□□□□□ -0.16
PTPRA-203ENST00000356147 WASHC2AQ641Q2 1341 aa14.07□□□□□ -0.16
PTPRA-203ENST00000356147 FOXD1Q16676 465 aa14.06□□□□□ -0.16
PTPRA-203ENST00000356147 ARID3CA6NKF2 412 aa14.06□□□□□ -0.16
PTPRA-203ENST00000356147 MAP3K1Q13233 1512 aa14.05□□□□□ -0.16
PTPRA-203ENST00000356147 AQRO60306 1485 aaKnown RBP eCLIP14.05□□□□□ -0.167e-8■■■■□ 24.7
PTPRA-203ENST00000356147 MTUS2Q5JR59 1369 aa14.05□□□□□ -0.16
PTPRA-203ENST00000356147 RAD54L2Q9Y4B4 1467 aa14.03□□□□□ -0.16
PTPRA-203ENST00000356147 FGD6Q6ZV73 1430 aa14.03□□□□□ -0.16
PTPRA-203ENST00000356147 HMGXB3Q12766 1538 aa14.02□□□□□ -0.16
PTPRA-203ENST00000356147 C11orf95C9JLR9 678 aaPredicted RBP14.02□□□□□ -0.17
PTPRA-203ENST00000356147 MRS2Q9HD23 443 aa13.99□□□□□ -0.17
PTPRA-203ENST00000356147 FANCIQ9NVI1 1328 aa13.99□□□□□ -0.17
PTPRA-203ENST00000356147 CFAP43Q8NDM7 1665 aa13.99□□□□□ -0.17
PTPRA-203ENST00000356147 POLR3GLQ9BT43 218 aa13.99□□□□□ -0.17
PTPRA-203ENST00000356147 UACAQ9BZF9 1416 aa13.98□□□□□ -0.17
PTPRA-203ENST00000356147 CADPSQ9ULU8 1353 aa13.98□□□□□ -0.17
PTPRA-203ENST00000356147 NBR1Q14596 966 aa13.97□□□□□ -0.17
PTPRA-203ENST00000356147 NAIPQ13075 1403 aa13.97□□□□□ -0.17
PTPRA-203ENST00000356147 EIF4G2P78344 907 aaKnown RBP eCLIP13.97□□□□□ -0.17
PTPRA-203ENST00000356147 PPP4R2Q9NY27 417 aa13.97□□□□□ -0.17
PTPRA-203ENST00000356147 CASKIN1Q8WXD9 1431 aa13.96□□□□□ -0.17
PTPRA-203ENST00000356147 L3MBTL2Q969R5 705 aa13.95□□□□□ -0.18
PTPRA-203ENST00000356147 HFM1A2PYH4 1435 aa13.95□□□□□ -0.18
PTPRA-203ENST00000356147 FYCO1Q9BQS8 1478 aa13.94□□□□□ -0.18
PTPRA-203ENST00000356147 PTPN23Q9H3S7 1636 aa13.93□□□□□ -0.18
PTPRA-203ENST00000356147 PRKRIP1Q9H875 184 aaPredicted RBP13.93□□□□□ -0.18
PTPRA-203ENST00000356147 KDM5BQ9UGL1 1544 aa13.92□□□□□ -0.18
PTPRA-203ENST00000356147 PAK3O75914 559 aaPredicted RBP13.91□□□□□ -0.18
PTPRA-203ENST00000356147 NCOA2Q15596 1464 aa13.91□□□□□ -0.18
PTPRA-203ENST00000356147 DEKP35659 375 aaKnown RBP13.9□□□□□ -0.18
PTPRA-203ENST00000356147 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.9□□□□□ -0.18
PTPRA-203ENST00000356147 FMN1Q68DA7 1419 aa13.89□□□□□ -0.19
PTPRA-203ENST00000356147 NBPF8Q3BBV2 869 aa13.89□□□□□ -0.19
PTPRA-203ENST00000356147 MPHOSPH9Q99550 1183 aa13.89□□□□□ -0.19
PTPRA-203ENST00000356147 TDRD9Q8NDG6 1382 aaKnown RBP13.88□□□□□ -0.19
PTPRA-203ENST00000356147 ZNF326Q5BKZ1 582 aaKnown RBP13.88□□□□□ -0.19
PTPRA-203ENST00000356147 MYOM3Q5VTT5 1437 aa13.88□□□□□ -0.19
PTPRA-203ENST00000356147 FANCD2Q9BXW9 1451 aa13.87□□□□□ -0.19
PTPRA-203ENST00000356147 CNTLNQ9NXG0 1405 aa13.87□□□□□ -0.19
PTPRA-203ENST00000356147 SNAPC4Q5SXM2 1469 aa13.86□□□□□ -0.19
PTPRA-203ENST00000356147 CCDC7Q96M83 1385 aa13.85□□□□□ -0.19
PTPRA-203ENST00000356147 AKNAQ7Z591 1439 aa13.85□□□□□ -0.19
PTPRA-203ENST00000356147 DENND4BO75064 1496 aaPredicted RBP13.85□□□□□ -0.19
PTPRA-203ENST00000356147 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
PTPRA-203ENST00000356147 KDM6BO15054 1643 aa13.84□□□□□ -0.19
PTPRA-203ENST00000356147 NESP48681 1621 aa13.84□□□□□ -0.19
PTPRA-203ENST00000356147 KIF7Q2M1P5 1343 aa13.83□□□□□ -0.2
PTPRA-203ENST00000356147 ZBED9Q6R2W3 1325 aa13.83□□□□□ -0.2
PTPRA-203ENST00000356147 NOP58Q9Y2X3 529 aaKnown RBP13.83□□□□□ -0.2
PTPRA-203ENST00000356147 EFCAB5A4FU69 1503 aa13.82□□□□□ -0.2
PTPRA-203ENST00000356147 CCDC136Q96JN2 1154 aa13.81□□□□□ -0.2
PTPRA-203ENST00000356147 LRRIQ1Q96JM4 1722 aa13.8□□□□□ -0.2
PTPRA-203ENST00000356147 SALL2Q9Y467 1007 aaPredicted RBP13.8□□□□□ -0.2
PTPRA-203ENST00000356147 MAGI3Q5TCQ9 1506 aa13.79□□□□□ -0.2
PTPRA-203ENST00000356147 ERICH6BQ5W0A0 696 aa13.79□□□□□ -0.2
PTPRA-203ENST00000356147 TOPBP1Q92547 1522 aa13.79□□□□□ -0.2
PTPRA-203ENST00000356147 SLC4A1APQ9BWU0 796 aaKnown RBP13.79□□□□□ -0.2
PTPRA-203ENST00000356147 ABCA10Q8WWZ4 1543 aa13.78□□□□□ -0.2
PTPRA-203ENST00000356147 ZNF644Q9H582 1327 aaPredicted RBP13.78□□□□□ -0.2
PTPRA-203ENST00000356147 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
PTPRA-203ENST00000356147 NCOA1Q15788 1441 aa13.78□□□□□ -0.2
PTPRA-203ENST00000356147 NPM2Q86SE8 214 aaKnown RBP13.77□□□□□ -0.2
PTPRA-203ENST00000356147 GRIN2BQ13224 1484 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms