RNA–Protein interactions for RNA: ENST00000354880.9

CTSA-202, Transcript of cathepsin A, humanhuman

TSL 2 BASIC

Gene CTSA, Length 1,820 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-202ENST00000354880 CHMP7Q8WUX9 453 aaPredicted RBP24.79■■□□□ 1.56
CTSA-202ENST00000354880 FBLN2P98095 1184 aa24.74■■□□□ 1.55
CTSA-202ENST00000354880 ARHGAP35Q9NRY4 1499 aa24.68■■□□□ 1.54
CTSA-202ENST00000354880 IQGAP2Q13576 1575 aa24.65■■□□□ 1.54
CTSA-202ENST00000354880 KIAA0586Q9BVV6 1533 aa24.64■■□□□ 1.54
CTSA-202ENST00000354880 CEP170Q5SW79 1584 aa24.64■■□□□ 1.53
CTSA-202ENST00000354880 ARAP1Q96P48 1450 aa24.63■■□□□ 1.53
CTSA-202ENST00000354880 NUP160Q12769 1436 aa24.63■■□□□ 1.53
CTSA-202ENST00000354880 CHD1O14646 1710 aa24.62■■□□□ 1.53
CTSA-202ENST00000354880 EFCAB5A4FU69 1503 aa24.61■■□□□ 1.53
CTSA-202ENST00000354880 VPS8Q8N3P4 1428 aa24.6■■□□□ 1.53
CTSA-202ENST00000354880 SAMD9Q5K651 1589 aa24.56■■□□□ 1.52
CTSA-202ENST00000354880 UGGT2Q9NYU1 1516 aa24.53■■□□□ 1.52
CTSA-202ENST00000354880 P3H3Q8IVL6 736 aa24.52■■□□□ 1.52
CTSA-202ENST00000354880 FHOD3Q2V2M9 1422 aa24.5■■□□□ 1.51
CTSA-202ENST00000354880 JPH4Q96JJ6 628 aa24.44■■□□□ 1.5
CTSA-202ENST00000354880 DISP1Q96F81 1524 aa24.42■■□□□ 1.5
CTSA-202ENST00000354880 KIAA0556O60303 1618 aa24.4■■□□□ 1.5
CTSA-202ENST00000354880 FMN1Q68DA7 1419 aa24.4■■□□□ 1.5
CTSA-202ENST00000354880 APLP2Q06481 763 aa24.36■■□□□ 1.49
CTSA-202ENST00000354880 CARMIL2Q6F5E8 1435 aa24.35■■□□□ 1.49
CTSA-202ENST00000354880 CLASP1Q7Z460 1538 aa24.35■■□□□ 1.49
CTSA-202ENST00000354880 PCF11O94913 1555 aaKnown RBP24.33■■□□□ 1.49
CTSA-202ENST00000354880 PPARGC1BQ86YN6 1023 aaKnown RBP24.32■■□□□ 1.48
CTSA-202ENST00000354880 SHROOM2Q13796 1616 aa24.32■■□□□ 1.48
CTSA-202ENST00000354880 CASKIN1Q8WXD9 1431 aa24.31■■□□□ 1.48
CTSA-202ENST00000354880 FYCO1Q9BQS8 1478 aa24.3■■□□□ 1.48
CTSA-202ENST00000354880 PRG4Q92954 1404 aaPredicted RBP24.29■■□□□ 1.48
CTSA-202ENST00000354880 OSCARQ8IYS5 282 aa24.24■■□□□ 1.47
CTSA-202ENST00000354880 ATP1B4Q9UN42 357 aaPredicted RBP24.24■■□□□ 1.47
CTSA-202ENST00000354880 MAP3K1Q13233 1512 aa24.22■■□□□ 1.47
CTSA-202ENST00000354880 TTBK1Q5TCY1 1321 aaPredicted RBP24.21■■□□□ 1.47
CTSA-202ENST00000354880 TIAM1Q13009 1591 aa24.19■■□□□ 1.46
CTSA-202ENST00000354880 HECW1Q76N89 1606 aa24.16■■□□□ 1.46
CTSA-202ENST00000354880 CFAP43Q8NDM7 1665 aa24.16■■□□□ 1.46
CTSA-202ENST00000354880 TRIM26Q12899 539 aaPredicted RBP24.15■■□□□ 1.46
CTSA-202ENST00000354880 KANK4Q5T7N3 995 aaPredicted RBP24.14■■□□□ 1.46
CTSA-202ENST00000354880 ERCC6L2Q5T890 1561 aa24.14■■□□□ 1.46
CTSA-202ENST00000354880 RAPGEF6Q8TEU7 1601 aa24.14■■□□□ 1.45
CTSA-202ENST00000354880 LRRIQ1Q96JM4 1722 aa24.13■■□□□ 1.45
CTSA-202ENST00000354880 PTPRGP23470 1445 aa24.12■■□□□ 1.45
CTSA-202ENST00000354880 CCDC18Q5T9S5 1454 aa24.1■■□□□ 1.45
CTSA-202ENST00000354880 PLB1Q6P1J6 1458 aa24.1■■□□□ 1.45
CTSA-202ENST00000354880 LRRC9Q6ZRR7 1453 aa24.09■■□□□ 1.45
CTSA-202ENST00000354880 EPRSP07814 1512 aaKnown RBP24.08■■□□□ 1.44
CTSA-202ENST00000354880 NUP153P49790 1475 aaKnown RBP24.07■■□□□ 1.44
CTSA-202ENST00000354880 PCGF6Q9BYE7 350 aa24.06■■□□□ 1.44
CTSA-202ENST00000354880 ABCA8O94911 1581 aa24.06■■□□□ 1.44
CTSA-202ENST00000354880 CDK13Q14004 1512 aaKnown RBP24.01■■□□□ 1.43
CTSA-202ENST00000354880 ARID3CA6NKF2 412 aa23.99■■□□□ 1.43
CTSA-202ENST00000354880 MTUS2Q5JR59 1369 aa23.99■■□□□ 1.43
CTSA-202ENST00000354880 UACAQ9BZF9 1416 aa23.98■■□□□ 1.43
CTSA-202ENST00000354880 EHBP1L1Q8N3D4 1523 aa23.95■■□□□ 1.42
CTSA-202ENST00000354880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.94■■□□□ 1.42
CTSA-202ENST00000354880 HNRNPUL2Q1KMD3 747 aaKnown RBP23.94■■□□□ 1.42
CTSA-202ENST00000354880 MAGI3Q5TCQ9 1506 aa23.93■■□□□ 1.42
CTSA-202ENST00000354880 CDK11AQ9UQ88 783 aaPredicted RBP23.91■■□□□ 1.42
CTSA-202ENST00000354880 ABCC2Q92887 1545 aa23.91■■□□□ 1.42
CTSA-202ENST00000354880 ATP10BO94823 1461 aa23.9■■□□□ 1.42
CTSA-202ENST00000354880 UHRF1BP1LA0JNW5 1464 aa23.87■■□□□ 1.41
CTSA-202ENST00000354880 SUPT6HQ7KZ85 1726 aaKnown RBP23.87■■□□□ 1.41
CTSA-202ENST00000354880 PHLDB1Q86UU1 1377 aa23.85■■□□□ 1.41
CTSA-202ENST00000354880 NCOA2Q15596 1464 aa23.84■■□□□ 1.41
CTSA-202ENST00000354880 ARHGEF11O15085 1522 aa23.83■■□□□ 1.41
CTSA-202ENST00000354880 RRBP1Q9P2E9 1410 aaKnown RBP23.82■■□□□ 1.4
CTSA-202ENST00000354880 TROQ12816 1431 aaPredicted RBP23.82■■□□□ 1.4
CTSA-202ENST00000354880 PLEKHD1A6NEE1 506 aa23.8■■□□□ 1.4
CTSA-202ENST00000354880 ADCY10Q96PN6 1610 aa23.78■■□□□ 1.4
CTSA-202ENST00000354880 KDM5BQ9UGL1 1544 aa23.77■■□□□ 1.4
CTSA-202ENST00000354880 CCNB3Q8WWL7 1395 aa23.77■■□□□ 1.4
CTSA-202ENST00000354880 ZCCHC11Q5TAX3 1644 aaKnown RBP23.75■■□□□ 1.39
CTSA-202ENST00000354880 MYOM3Q5VTT5 1437 aa23.73■■□□□ 1.39
CTSA-202ENST00000354880 RIMBP3CA6NJZ7 1639 aa23.72■■□□□ 1.39
CTSA-202ENST00000354880 RIMBP3BA6NNM3 1639 aa23.72■■□□□ 1.39
CTSA-202ENST00000354880 RIMBP3Q9UFD9 1639 aa23.72■■□□□ 1.39
CTSA-202ENST00000354880 FGD6Q6ZV73 1430 aa23.7■■□□□ 1.39
CTSA-202ENST00000354880 KIF14Q15058 1648 aa23.7■■□□□ 1.38
CTSA-202ENST00000354880 FAM50AQ14320 339 aaKnown RBP23.64■■□□□ 1.38
CTSA-202ENST00000354880 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.64■■□□□ 1.37
CTSA-202ENST00000354880 MIA2Q96PC5 1412 aa23.63■■□□□ 1.37
CTSA-202ENST00000354880 ABCC10Q5T3U5 1492 aa23.61■■□□□ 1.37
CTSA-202ENST00000354880 NPM1P06748 294 aaKnown RBP eCLIP23.61■■□□□ 1.37
CTSA-202ENST00000354880 CYB5RLQ6IPT4 315 aa23.61■■□□□ 1.37
CTSA-202ENST00000354880 PTPN23Q9H3S7 1636 aa23.6■■□□□ 1.37
CTSA-202ENST00000354880 ITSN2Q9NZM3 1697 aa23.59■■□□□ 1.37
CTSA-202ENST00000354880 GPATCH8Q9UKJ3 1502 aaKnown RBP23.58■■□□□ 1.37
CTSA-202ENST00000354880 TCOF1Q13428 1488 aaKnown RBP23.56■■□□□ 1.36
CTSA-202ENST00000354880 WDR7Q9Y4E6 1490 aa23.56■■□□□ 1.36
CTSA-202ENST00000354880 KCNH8Q96L42 1107 aa23.56■■□□□ 1.36
CTSA-202ENST00000354880 CDC42BPAQ5VT25 1732 aa23.55■■□□□ 1.36
CTSA-202ENST00000354880 ITGAEP38570 1179 aa23.54■■□□□ 1.36
CTSA-202ENST00000354880 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.54■■□□□ 1.36
CTSA-202ENST00000354880 ASXL2Q76L83 1435 aa23.53■■□□□ 1.36
CTSA-202ENST00000354880 CFDP1Q9UEE9 299 aaPredicted RBP23.53■■□□□ 1.36
CTSA-202ENST00000354880 TTC37Q6PGP7 1564 aa23.52■■□□□ 1.36
CTSA-202ENST00000354880 PREX2Q70Z35 1606 aa23.47■■□□□ 1.35
CTSA-202ENST00000354880 ZNF644Q9H582 1327 aaPredicted RBP23.46■■□□□ 1.35
CTSA-202ENST00000354880 MYO5CQ9NQX4 1742 aa23.45■■□□□ 1.35
CTSA-202ENST00000354880 CDC42BPBQ9Y5S2 1711 aa23.45■■□□□ 1.34
CTSA-202ENST00000354880 CAMSAP2Q08AD1 1489 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms