RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 KIAA0586Q9BVV6 1533 aa36.49■■■■□ 3.43
SHMT1-203ENST00000354098 JPH4Q96JJ6 628 aa36.39■■■■□ 3.42
SHMT1-203ENST00000354098 SHROOM2Q13796 1616 aa36.35■■■■□ 3.41
SHMT1-203ENST00000354098 GOLGA3Q08378 1498 aa36.35■■■■□ 3.41
SHMT1-203ENST00000354098 IQGAP2Q13576 1575 aa36.34■■■■□ 3.41
SHMT1-203ENST00000354098 CTTNBP2Q8WZ74 1663 aa36.34■■■■□ 3.41
SHMT1-203ENST00000354098 ARHGEF11O15085 1522 aa36.33■■■■□ 3.41
SHMT1-203ENST00000354098 UBTFP17480 764 aaKnown RBP36.29■■■■□ 3.4
SHMT1-203ENST00000354098 RIMBP3CA6NJZ7 1639 aa36.27■■■■□ 3.4
SHMT1-203ENST00000354098 RIMBP3BA6NNM3 1639 aa36.27■■■■□ 3.4
SHMT1-203ENST00000354098 RIMBP3Q9UFD9 1639 aa36.27■■■■□ 3.4
SHMT1-203ENST00000354098 PRG4Q92954 1404 aaPredicted RBP36.27■■■■□ 3.4
SHMT1-203ENST00000354098 ERCC6L2Q5T890 1561 aa36.26■■■■□ 3.4
SHMT1-203ENST00000354098 UGGT2Q9NYU1 1516 aa36.16■■■■□ 3.38
SHMT1-203ENST00000354098 LOC105371045A0A1W2PR82 267 aa36.13■■■■□ 3.37
SHMT1-203ENST00000354098 RANGAP1P46060 587 aaPredicted RBP36.12■■■■□ 3.37
SHMT1-203ENST00000354098 DISP1Q96F81 1524 aa36.1■■■■□ 3.37
SHMT1-203ENST00000354098 ARAP1Q96P48 1450 aa36.08■■■■□ 3.37
SHMT1-203ENST00000354098 CARMIL2Q6F5E8 1435 aa36.06■■■■□ 3.36
SHMT1-203ENST00000354098 CYB5RLQ6IPT4 315 aa36.03■■■■□ 3.36
SHMT1-203ENST00000354098 KIAA0556O60303 1618 aa36■■■■□ 3.35
SHMT1-203ENST00000354098 TNIKQ9UKE5 1360 aa36■■■■□ 3.35
SHMT1-203ENST00000354098 P3H3Q8IVL6 736 aa35.97■■■■□ 3.35
SHMT1-203ENST00000354098 TTBK1Q5TCY1 1321 aaPredicted RBP35.96■■■■□ 3.35
SHMT1-203ENST00000354098 SAMD9Q5K651 1589 aa35.92■■■■□ 3.34
SHMT1-203ENST00000354098 PTPRGP23470 1445 aa35.89■■■■□ 3.34
SHMT1-203ENST00000354098 EFCAB5A4FU69 1503 aa35.82■■■■□ 3.33
SHMT1-203ENST00000354098 ARHGAP35Q9NRY4 1499 aa35.81■■■■□ 3.32
SHMT1-203ENST00000354098 FHOD3Q2V2M9 1422 aa35.8■■■■□ 3.32
SHMT1-203ENST00000354098 CLIP1P30622 1438 aa35.74■■■■□ 3.31
SHMT1-203ENST00000354098 CEP162Q5TB80 1403 aa35.72■■■■□ 3.31
SHMT1-203ENST00000354098 PLB1Q6P1J6 1458 aa35.66■■■■□ 3.3
SHMT1-203ENST00000354098 UACAQ9BZF9 1416 aa35.65■■■■□ 3.3
SHMT1-203ENST00000354098 ADCY10Q96PN6 1610 aa35.63■■■■□ 3.29
SHMT1-203ENST00000354098 ABCA8O94911 1581 aa35.58■■■■□ 3.29
SHMT1-203ENST00000354098 ABCC2Q92887 1545 aa35.56■■■■□ 3.28
SHMT1-203ENST00000354098 UHRF1BP1LA0JNW5 1464 aa35.56■■■■□ 3.28
SHMT1-203ENST00000354098 FMN1Q68DA7 1419 aa35.51■■■■□ 3.28
SHMT1-203ENST00000354098 RAPGEF6Q8TEU7 1601 aa35.48■■■■□ 3.27
SHMT1-203ENST00000354098 NPM1P06748 294 aaKnown RBP eCLIP35.46■■■■□ 3.27
SHMT1-203ENST00000354098 ARID3CA6NKF2 412 aa35.43■■■■□ 3.26
SHMT1-203ENST00000354098 KDM5BQ9UGL1 1544 aa35.41■■■■□ 3.26
SHMT1-203ENST00000354098 NUP153P49790 1475 aaKnown RBP35.39■■■■□ 3.26
SHMT1-203ENST00000354098 ATP1B4Q9UN42 357 aaPredicted RBP35.37■■■■□ 3.25
SHMT1-203ENST00000354098 ZCCHC11Q5TAX3 1644 aaKnown RBP35.34■■■■□ 3.25
SHMT1-203ENST00000354098 ATP10BO94823 1461 aa35.33■■■■□ 3.25
SHMT1-203ENST00000354098 PCF11O94913 1555 aaKnown RBP35.33■■■■□ 3.25
SHMT1-203ENST00000354098 CASKIN1Q8WXD9 1431 aa35.31■■■■□ 3.24
SHMT1-203ENST00000354098 HECW1Q76N89 1606 aa35.28■■■■□ 3.24
SHMT1-203ENST00000354098 MAPKBP1O60336 1514 aa35.26■■■■□ 3.24
SHMT1-203ENST00000354098 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.25■■■■□ 3.23
SHMT1-203ENST00000354098 HNRNPUL2Q1KMD3 747 aaKnown RBP35.25■■■■□ 3.23
SHMT1-203ENST00000354098 ASXL2Q76L83 1435 aa35.23■■■■□ 3.23
SHMT1-203ENST00000354098 FYCO1Q9BQS8 1478 aa35.23■■■■□ 3.23
SHMT1-203ENST00000354098 VPS8Q8N3P4 1428 aa35.22■■■■□ 3.23
SHMT1-203ENST00000354098 EPRSP07814 1512 aaKnown RBP35.22■■■■□ 3.23
SHMT1-203ENST00000354098 CDK13Q14004 1512 aaKnown RBP35.22■■■■□ 3.23
SHMT1-203ENST00000354098 LRRIQ1Q96JM4 1722 aa35.19■■■■□ 3.22
SHMT1-203ENST00000354098 TRHP20396 242 aaPredicted RBP35.11■■■■□ 3.21
SHMT1-203ENST00000354098 WDR7Q9Y4E6 1490 aa35.11■■■■□ 3.21
SHMT1-203ENST00000354098 CCDC18Q5T9S5 1454 aa35.08■■■■□ 3.21
SHMT1-203ENST00000354098 ABCC10Q5T3U5 1492 aa35.07■■■■□ 3.2
SHMT1-203ENST00000354098 PLEKHD1A6NEE1 506 aa35.06■■■■□ 3.2
SHMT1-203ENST00000354098 KCNH8Q96L42 1107 aa35.06■■■■□ 3.2
SHMT1-203ENST00000354098 FAM69CQ0P6D2 419 aa35.03■■■■□ 3.2
SHMT1-203ENST00000354098 DIP2BQ9P265 1576 aa35.02■■■■□ 3.2
SHMT1-203ENST00000354098 CDK11AQ9UQ88 783 aaPredicted RBP34.99■■■■□ 3.19
SHMT1-203ENST00000354098 KIF13AQ9H1H9 1805 aa34.97■■■■□ 3.19
SHMT1-203ENST00000354098 MAGI3Q5TCQ9 1506 aa34.94■■■■□ 3.18
SHMT1-203ENST00000354098 GLI2P10070 1586 aa34.9■■■■□ 3.18
SHMT1-203ENST00000354098 TROQ12816 1431 aaPredicted RBP34.9■■■■□ 3.18
SHMT1-203ENST00000354098 TIAM1Q13009 1591 aa34.88■■■■□ 3.17
SHMT1-203ENST00000354098 CFAP43Q8NDM7 1665 aa34.86■■■■□ 3.17
SHMT1-203ENST00000354098 MTUS2Q5JR59 1369 aa34.82■■■■□ 3.16
SHMT1-203ENST00000354098 APLP2Q06481 763 aa34.82■■■■□ 3.16
SHMT1-203ENST00000354098 MAP3K1Q13233 1512 aa34.81■■■■□ 3.16
SHMT1-203ENST00000354098 KIF14Q15058 1648 aa34.81■■■■□ 3.16
SHMT1-203ENST00000354098 KANK4Q5T7N3 995 aaPredicted RBP34.79■■■■□ 3.16
SHMT1-203ENST00000354098 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.79■■■■□ 3.16
SHMT1-203ENST00000354098 ABCA9Q8IUA7 1624 aa34.78■■■■□ 3.16
SHMT1-203ENST00000354098 MAP3K4Q9Y6R4 1608 aa34.78■■■■□ 3.16
SHMT1-203ENST00000354098 CD109Q6YHK3 1445 aa34.75■■■■□ 3.15
SHMT1-203ENST00000354098 LRRC9Q6ZRR7 1453 aa34.74■■■■□ 3.15
SHMT1-203ENST00000354098 TTC37Q6PGP7 1564 aa34.74■■■■□ 3.15
SHMT1-203ENST00000354098 EHBP1L1Q8N3D4 1523 aa34.73■■■■□ 3.15
SHMT1-203ENST00000354098 TSPOAP1O95153 1857 aa34.73■■■■□ 3.15
SHMT1-203ENST00000354098 PPRC1Q5VV67 1664 aaKnown RBP34.67■■■■□ 3.14
SHMT1-203ENST00000354098 PLCH2O75038 1416 aa34.58■■■■□ 3.13
SHMT1-203ENST00000354098 NCOA2Q15596 1464 aa34.58■■■■□ 3.13
SHMT1-203ENST00000354098 SUPT6HQ7KZ85 1726 aaKnown RBP34.57■■■■□ 3.13
SHMT1-203ENST00000354098 PPARGC1BQ86YN6 1023 aaKnown RBP34.55■■■■□ 3.12
SHMT1-203ENST00000354098 TEX14Q8IWB6 1497 aa34.55■■■■□ 3.12
SHMT1-203ENST00000354098 MYO5CQ9NQX4 1742 aa34.55■■■■□ 3.12
SHMT1-203ENST00000354098 CCNB3Q8WWL7 1395 aa34.52■■■■□ 3.12
SHMT1-203ENST00000354098 GPATCH8Q9UKJ3 1502 aaKnown RBP34.52■■■■□ 3.12
SHMT1-203ENST00000354098 CDC42BPAQ5VT25 1732 aa34.5■■■■□ 3.11
SHMT1-203ENST00000354098 FANCAO15360 1455 aa34.48■■■■□ 3.11
SHMT1-203ENST00000354098 PREX2Q70Z35 1606 aa34.47■■■■□ 3.11
SHMT1-203ENST00000354098 CDC42BPBQ9Y5S2 1711 aa34.47■■■■□ 3.11
SHMT1-203ENST00000354098 ARHGAP5Q13017 1502 aa34.46■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms