RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 TSPY10P0CW01 314 aa17.14■□□□□ 0.33
SMAD9-201ENST00000350148 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
SMAD9-201ENST00000350148 KIF21BO75037 1637 aa17.11■□□□□ 0.33
SMAD9-201ENST00000350148 CLSPNQ9HAW4 1339 aa17.1■□□□□ 0.33
SMAD9-201ENST00000350148 TONSLQ96HA7 1378 aa17.09■□□□□ 0.33
SMAD9-201ENST00000350148 ERICH3Q5RHP9 1530 aa17.09■□□□□ 0.33
SMAD9-201ENST00000350148 RUSC2Q8N2Y8 1516 aa17.07■□□□□ 0.32
SMAD9-201ENST00000350148 CCNB3Q8WWL7 1395 aa17.07■□□□□ 0.32
SMAD9-201ENST00000350148 SYNJ1O43426 1573 aa17.07■□□□□ 0.32
SMAD9-201ENST00000350148 IGF1RP08069 1367 aa17.06■□□□□ 0.32
SMAD9-201ENST00000350148 POLR3GLQ9BT43 218 aa17.06■□□□□ 0.32
SMAD9-201ENST00000350148 GAPVD1Q14C86 1478 aa17.05■□□□□ 0.32
SMAD9-201ENST00000350148 LAMC3Q9Y6N6 1575 aa17.05■□□□□ 0.32
SMAD9-201ENST00000350148 ARHGAP35Q9NRY4 1499 aa17.02■□□□□ 0.32
SMAD9-201ENST00000350148 MRC2Q9UBG0 1479 aa17.01■□□□□ 0.31
SMAD9-201ENST00000350148 DNMBPQ6XZF7 1577 aa17.01■□□□□ 0.31
SMAD9-201ENST00000350148 CFDP1Q9UEE9 299 aaPredicted RBP17■□□□□ 0.31
SMAD9-201ENST00000350148 ANP32CO43423 234 aa16.99■□□□□ 0.31
SMAD9-201ENST00000350148 CUX1P39880 1505 aa16.98■□□□□ 0.31
SMAD9-201ENST00000350148 CHIC2Q9UKJ5 165 aa16.97■□□□□ 0.31
SMAD9-201ENST00000350148 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
SMAD9-201ENST00000350148 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
SMAD9-201ENST00000350148 IFT140Q96RY7 1462 aa16.94■□□□□ 0.3
SMAD9-201ENST00000350148 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
SMAD9-201ENST00000350148 ZNF326Q5BKZ1 582 aaKnown RBP16.92■□□□□ 0.3
SMAD9-201ENST00000350148 PRXQ9BXM0 1461 aa16.91■□□□□ 0.3
SMAD9-201ENST00000350148 FHOD3Q2V2M9 1422 aa16.9■□□□□ 0.3
SMAD9-201ENST00000350148 TIMELESSQ9UNS1 1208 aa16.89■□□□□ 0.29
SMAD9-201ENST00000350148 NESP48681 1621 aa16.89■□□□□ 0.29
SMAD9-201ENST00000350148 POLA1P09884 1462 aaPredicted RBP16.88■□□□□ 0.29
SMAD9-201ENST00000350148 CCDC18Q5T9S5 1454 aa16.87■□□□□ 0.29
SMAD9-201ENST00000350148 RRP7BPQ9NSQ0 103 aa16.87■□□□□ 0.29
SMAD9-201ENST00000350148 SETD5Q9C0A6 1442 aa16.86■□□□□ 0.29
SMAD9-201ENST00000350148 BIVM-ERCC5R4GMW8 1640 aa16.85■□□□□ 0.29
SMAD9-201ENST00000350148 ABCA10Q8WWZ4 1543 aa16.85■□□□□ 0.29
SMAD9-201ENST00000350148 EFCAB5A4FU69 1503 aa16.85■□□□□ 0.29
SMAD9-201ENST00000350148 KANK4Q5T7N3 995 aaPredicted RBP16.85■□□□□ 0.29
SMAD9-201ENST00000350148 SLC4A1APQ9BWU0 796 aaKnown RBP16.85■□□□□ 0.29
SMAD9-201ENST00000350148 KCNH8Q96L42 1107 aa16.84■□□□□ 0.29
SMAD9-201ENST00000350148 ESF1Q9H501 851 aaKnown RBP16.84■□□□□ 0.29
SMAD9-201ENST00000350148 JPH4Q96JJ6 628 aa16.84■□□□□ 0.29
SMAD9-201ENST00000350148 RSPH4AQ5TD94 716 aa16.78■□□□□ 0.28
SMAD9-201ENST00000350148 CUL7Q14999 1698 aa16.77■□□□□ 0.27
SMAD9-201ENST00000350148 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.76■□□□□ 0.27
SMAD9-201ENST00000350148 CASKIN1Q8WXD9 1431 aa16.76■□□□□ 0.27
SMAD9-201ENST00000350148 AQRO60306 1485 aaKnown RBP eCLIP16.76■□□□□ 0.27
SMAD9-201ENST00000350148 FYCO1Q9BQS8 1478 aa16.73■□□□□ 0.27
SMAD9-201ENST00000350148 RTL5Q5HYW3 569 aaPredicted RBP16.73■□□□□ 0.27
SMAD9-201ENST00000350148 BCANQ96GW7 911 aa16.72■□□□□ 0.27
SMAD9-201ENST00000350148 PTPRGP23470 1445 aa16.71■□□□□ 0.27
SMAD9-201ENST00000350148 EIF4G2P78344 907 aaKnown RBP eCLIP16.71■□□□□ 0.27
SMAD9-201ENST00000350148 ANKRD30AQ9BXX3 1397 aa16.7■□□□□ 0.26
SMAD9-201ENST00000350148 EFCAB2Q5VUJ9 269 aa16.69■□□□□ 0.26
SMAD9-201ENST00000350148 STAG3Q9UJ98 1225 aa16.67■□□□□ 0.26
SMAD9-201ENST00000350148 KANK1Q14678 1352 aa16.66■□□□□ 0.26
SMAD9-201ENST00000350148 RAB3GAP2Q9H2M9 1393 aa16.65■□□□□ 0.26
SMAD9-201ENST00000350148 LRRC9Q6ZRR7 1453 aa16.65■□□□□ 0.26
SMAD9-201ENST00000350148 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
SMAD9-201ENST00000350148 CHGAP10645 457 aaKnown RBP16.64■□□□□ 0.25
SMAD9-201ENST00000350148 CNGB1Q14028 1251 aaPredicted RBP16.64■□□□□ 0.25
SMAD9-201ENST00000350148 URB2Q14146 1524 aaKnown RBP16.63■□□□□ 0.25
SMAD9-201ENST00000350148 SNAPC4Q5SXM2 1469 aa16.6■□□□□ 0.25
SMAD9-201ENST00000350148 KIAA0586Q9BVV6 1533 aa16.6■□□□□ 0.25
SMAD9-201ENST00000350148 MAGI1Q96QZ7 1491 aaPredicted RBP16.59■□□□□ 0.25
SMAD9-201ENST00000350148 DDX10Q13206 875 aaKnown RBP16.59■□□□□ 0.25
SMAD9-201ENST00000350148 GLIPR1L2Q4G1C9 344 aa16.59■□□□□ 0.25
SMAD9-201ENST00000350148 DAXXQ9UER7 740 aaPredicted RBP16.59■□□□□ 0.25
SMAD9-201ENST00000350148 MYOM3Q5VTT5 1437 aa16.59■□□□□ 0.25
SMAD9-201ENST00000350148 SLC24A1O60721 1099 aa16.58■□□□□ 0.25
SMAD9-201ENST00000350148 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
SMAD9-201ENST00000350148 MAP3K1Q13233 1512 aa16.56■□□□□ 0.24
SMAD9-201ENST00000350148 PRDM2Q13029 1718 aa16.56■□□□□ 0.24
SMAD9-201ENST00000350148 CDCA8Q53HL2 280 aa16.56■□□□□ 0.24
SMAD9-201ENST00000350148 FGD6Q6ZV73 1430 aa16.56■□□□□ 0.24
SMAD9-201ENST00000350148 HECW1Q76N89 1606 aa16.56■□□□□ 0.24
SMAD9-201ENST00000350148 KDM2AQ9Y2K7 1162 aa16.56■□□□□ 0.24
SMAD9-201ENST00000350148 EHBP1L1Q8N3D4 1523 aa16.55■□□□□ 0.24
SMAD9-201ENST00000350148 RRBP1Q9P2E9 1410 aaKnown RBP16.54■□□□□ 0.24
SMAD9-201ENST00000350148 SYNJ2O15056 1496 aa16.54■□□□□ 0.24
SMAD9-201ENST00000350148 EIF5BO60841 1220 aaKnown RBP16.53■□□□□ 0.24
SMAD9-201ENST00000350148 IQGAP2Q13576 1575 aa16.53■□□□□ 0.24
SMAD9-201ENST00000350148 NEFMP07197 916 aa16.52■□□□□ 0.23
SMAD9-201ENST00000350148 TIAM1Q13009 1591 aa16.52■□□□□ 0.23
SMAD9-201ENST00000350148 SIN3AQ96ST3 1273 aa16.52■□□□□ 0.23
SMAD9-201ENST00000350148 MPHOSPH9Q99550 1183 aa16.51■□□□□ 0.23
SMAD9-201ENST00000350148 NCOA2Q15596 1464 aa16.5■□□□□ 0.23
SMAD9-201ENST00000350148 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.49■□□□□ 0.23
SMAD9-201ENST00000350148 DNAJC5BQ9UF47 199 aa16.48■□□□□ 0.23
SMAD9-201ENST00000350148 MIA2Q96PC5 1412 aa16.48■□□□□ 0.23
SMAD9-201ENST00000350148 MIER1Q8N108 512 aa16.47■□□□□ 0.23
SMAD9-201ENST00000350148 PRG4Q92954 1404 aaPredicted RBP16.47■□□□□ 0.23
SMAD9-201ENST00000350148 DHX57Q6P158 1386 aaKnown RBP16.47■□□□□ 0.23
SMAD9-201ENST00000350148 NUP155O75694 1391 aa16.47■□□□□ 0.23
SMAD9-201ENST00000350148 GRIN2AQ12879 1464 aa16.46■□□□□ 0.23
SMAD9-201ENST00000350148 CARD11Q9BXL7 1154 aa16.46■□□□□ 0.23
SMAD9-201ENST00000350148 PKD2Q13563 968 aa16.46■□□□□ 0.22
SMAD9-201ENST00000350148 PHLDB1Q86UU1 1377 aa16.45■□□□□ 0.22
SMAD9-201ENST00000350148 SPAG9O60271 1321 aaKnown RBP16.45■□□□□ 0.22
SMAD9-201ENST00000350148 RGL3Q3MIN7 710 aa16.42■□□□□ 0.22
SMAD9-201ENST00000350148 TROQ12816 1431 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms