RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 ARHGEF11O15085 1522 aa10.76□□□□□ -0.69
TRIM55-203ENST00000350034 WDR62O43379 1518 aa10.76□□□□□ -0.69
TRIM55-203ENST00000350034 PPARGC1BQ86YN6 1023 aaKnown RBP10.76□□□□□ -0.69
TRIM55-203ENST00000350034 TDRD9Q8NDG6 1382 aaKnown RBP10.76□□□□□ -0.69
TRIM55-203ENST00000350034 GAPVD1Q14C86 1478 aa10.75□□□□□ -0.69
TRIM55-203ENST00000350034 ARHGAP35Q9NRY4 1499 aa10.75□□□□□ -0.69
TRIM55-203ENST00000350034 IFT140Q96RY7 1462 aa10.72□□□□□ -0.69
TRIM55-203ENST00000350034 RANGAP1P46060 587 aaPredicted RBP10.69□□□□□ -0.7
TRIM55-203ENST00000350034 FHAD1B1AJZ9 1412 aa10.67□□□□□ -0.7
TRIM55-203ENST00000350034 AQRO60306 1485 aaKnown RBP eCLIP10.66□□□□□ -0.7
TRIM55-203ENST00000350034 GRIN2BQ13224 1484 aa10.66□□□□□ -0.7
TRIM55-203ENST00000350034 ERCC6L2Q5T890 1561 aa10.65□□□□□ -0.7
TRIM55-203ENST00000350034 EFCAB5A4FU69 1503 aa10.65□□□□□ -0.7
TRIM55-203ENST00000350034 APLP2Q06481 763 aa10.65□□□□□ -0.7
TRIM55-203ENST00000350034 FBXO41Q8TF61 875 aa10.65□□□□□ -0.7
TRIM55-203ENST00000350034 MAP3K1Q13233 1512 aa10.64□□□□□ -0.71
TRIM55-203ENST00000350034 ADAMTS12P58397 1594 aa10.64□□□□□ -0.71
TRIM55-203ENST00000350034 ZNF608Q9ULD9 1512 aaPredicted RBP10.63□□□□□ -0.71
TRIM55-203ENST00000350034 PBRM1Q86U86 1689 aa10.62□□□□□ -0.71
TRIM55-203ENST00000350034 CTTNBP2Q8WZ74 1663 aa10.62□□□□□ -0.71
TRIM55-203ENST00000350034 TTBK1Q5TCY1 1321 aaPredicted RBP10.6□□□□□ -0.71
TRIM55-203ENST00000350034 ZEB1P37275 1124 aaPredicted RBP10.6□□□□□ -0.71
TRIM55-203ENST00000350034 KANK4Q5T7N3 995 aaPredicted RBP10.6□□□□□ -0.71
TRIM55-203ENST00000350034 ILDR2Q71H61 639 aa10.6□□□□□ -0.71
TRIM55-203ENST00000350034 CYB5RLQ6IPT4 315 aa10.59□□□□□ -0.71
TRIM55-203ENST00000350034 SAMD9Q5K651 1589 aa10.59□□□□□ -0.71
TRIM55-203ENST00000350034 FHOD3Q2V2M9 1422 aa10.58□□□□□ -0.72
TRIM55-203ENST00000350034 CASKIN1Q8WXD9 1431 aa10.58□□□□□ -0.72
TRIM55-203ENST00000350034 EIF4G3O43432 1585 aaKnown RBP10.56□□□□□ -0.72
TRIM55-203ENST00000350034 TIAM1Q13009 1591 aa10.56□□□□□ -0.72
TRIM55-203ENST00000350034 FMN1Q68DA7 1419 aa10.56□□□□□ -0.72
TRIM55-203ENST00000350034 RRBP1Q9P2E9 1410 aaKnown RBP10.56□□□□□ -0.72
TRIM55-203ENST00000350034 SNAPC4Q5SXM2 1469 aa10.55□□□□□ -0.72
TRIM55-203ENST00000350034 MAGI1Q96QZ7 1491 aaPredicted RBP10.55□□□□□ -0.72
TRIM55-203ENST00000350034 FYCO1Q9BQS8 1478 aa10.55□□□□□ -0.72
TRIM55-203ENST00000350034 PCF11O94913 1555 aaKnown RBP10.55□□□□□ -0.72
TRIM55-203ENST00000350034 P3H3Q8IVL6 736 aa10.54□□□□□ -0.72
TRIM55-203ENST00000350034 GRIN2AQ12879 1464 aa10.53□□□□□ -0.72
TRIM55-203ENST00000350034 LRRC9Q6ZRR7 1453 aa10.53□□□□□ -0.72
TRIM55-203ENST00000350034 KIAA0586Q9BVV6 1533 aa10.53□□□□□ -0.72
TRIM55-203ENST00000350034 UGGT2Q9NYU1 1516 aa10.53□□□□□ -0.72
TRIM55-203ENST00000350034 IQGAP2Q13576 1575 aa10.52□□□□□ -0.72
TRIM55-203ENST00000350034 CFAP43Q8NDM7 1665 aa10.51□□□□□ -0.73
TRIM55-203ENST00000350034 SYNJ2O15056 1496 aa10.51□□□□□ -0.73
TRIM55-203ENST00000350034 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.49□□□□□ -0.73
TRIM55-203ENST00000350034 NUP160Q12769 1436 aa10.49□□□□□ -0.73
TRIM55-203ENST00000350034 CCNB3Q8WWL7 1395 aa10.48□□□□□ -0.73
TRIM55-203ENST00000350034 FOXD1Q16676 465 aa10.46□□□□□ -0.73
TRIM55-203ENST00000350034 HNRNPUL2Q1KMD3 747 aaKnown RBP10.46□□□□□ -0.73
TRIM55-203ENST00000350034 CCER1Q8TC90 406 aaPredicted RBP10.46□□□□□ -0.73
TRIM55-203ENST00000350034 DISP1Q96F81 1524 aa10.46□□□□□ -0.74
TRIM55-203ENST00000350034 CEP170Q5SW79 1584 aa10.45□□□□□ -0.74
TRIM55-203ENST00000350034 HECW2Q9P2P5 1572 aa10.45□□□□□ -0.74
TRIM55-203ENST00000350034 PHLDB1Q86UU1 1377 aa10.45□□□□□ -0.74
TRIM55-203ENST00000350034 CHMP7Q8WUX9 453 aaPredicted RBP10.45□□□□□ -0.74
TRIM55-203ENST00000350034 DISP3Q9P2K9 1392 aa10.44□□□□□ -0.74
TRIM55-203ENST00000350034 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.43□□□□□ -0.74
TRIM55-203ENST00000350034 KIAA0556O60303 1618 aa10.43□□□□□ -0.74
TRIM55-203ENST00000350034 KDM4FA0A1W2PPD8 638 aa10.42□□□□□ -0.74
TRIM55-203ENST00000350034 CCDC18Q5T9S5 1454 aa10.42□□□□□ -0.74
TRIM55-203ENST00000350034 ATP1B4Q9UN42 357 aaPredicted RBP10.41□□□□□ -0.74
TRIM55-203ENST00000350034 HECW1Q76N89 1606 aa10.4□□□□□ -0.74
TRIM55-203ENST00000350034 MTUS2Q5JR59 1369 aa10.39□□□□□ -0.75
TRIM55-203ENST00000350034 EPRSP07814 1512 aaKnown RBP10.39□□□□□ -0.75
TRIM55-203ENST00000350034 EHBP1L1Q8N3D4 1523 aa10.39□□□□□ -0.75
TRIM55-203ENST00000350034 LRRIQ1Q96JM4 1722 aa10.39□□□□□ -0.75
TRIM55-203ENST00000350034 JPH4Q96JJ6 628 aa10.38□□□□□ -0.75
TRIM55-203ENST00000350034 MAGI3Q5TCQ9 1506 aa10.38□□□□□ -0.75
TRIM55-203ENST00000350034 NCOA2Q15596 1464 aa10.36□□□□□ -0.75
TRIM55-203ENST00000350034 FGD6Q6ZV73 1430 aa10.36□□□□□ -0.75
TRIM55-203ENST00000350034 FBLN2P98095 1184 aa10.36□□□□□ -0.75
TRIM55-203ENST00000350034 POTEDQ86YR6 584 aa10.36□□□□□ -0.75
TRIM55-203ENST00000350034 CLSPNQ9HAW4 1339 aa10.35□□□□□ -0.75
TRIM55-203ENST00000350034 CARMIL2Q6F5E8 1435 aa10.35□□□□□ -0.75
TRIM55-203ENST00000350034 NUP153P49790 1475 aaKnown RBP10.35□□□□□ -0.75
TRIM55-203ENST00000350034 MYOM3Q5VTT5 1437 aa10.34□□□□□ -0.75
TRIM55-203ENST00000350034 DHX57Q6P158 1386 aaKnown RBP10.34□□□□□ -0.75
TRIM55-203ENST00000350034 CDK13Q14004 1512 aaKnown RBP10.33□□□□□ -0.76
TRIM55-203ENST00000350034 RAPGEF6Q8TEU7 1601 aa10.33□□□□□ -0.76
TRIM55-203ENST00000350034 SPATA31D1Q6ZQQ2 1576 aa10.33□□□□□ -0.76
TRIM55-203ENST00000350034 SUPT6HQ7KZ85 1726 aaKnown RBP10.33□□□□□ -0.76
TRIM55-203ENST00000350034 TCOF1Q13428 1488 aaKnown RBP10.31□□□□□ -0.76
TRIM55-203ENST00000350034 FAM50AQ14320 339 aaKnown RBP10.31□□□□□ -0.76
TRIM55-203ENST00000350034 SETD5Q9C0A6 1442 aa10.31□□□□□ -0.76
TRIM55-203ENST00000350034 MIA2Q96PC5 1412 aa10.3□□□□□ -0.76
TRIM55-203ENST00000350034 ABCA8O94911 1581 aa10.3□□□□□ -0.76
TRIM55-203ENST00000350034 PLB1Q6P1J6 1458 aa10.3□□□□□ -0.76
TRIM55-203ENST00000350034 RAB3GAP2Q9H2M9 1393 aa10.29□□□□□ -0.76
TRIM55-203ENST00000350034 SHROOM2Q13796 1616 aa10.29□□□□□ -0.76
TRIM55-203ENST00000350034 PRG4Q92954 1404 aaPredicted RBP10.28□□□□□ -0.76
TRIM55-203ENST00000350034 CHD1O14646 1710 aa10.27□□□□□ -0.76
TRIM55-203ENST00000350034 TROQ12816 1431 aaPredicted RBP10.27□□□□□ -0.77
TRIM55-203ENST00000350034 PTPRKQ15262 1439 aa10.27□□□□□ -0.77
TRIM55-203ENST00000350034 ITGAEP38570 1179 aa10.27□□□□□ -0.77
TRIM55-203ENST00000350034 CDK11AQ9UQ88 783 aaPredicted RBP10.27□□□□□ -0.77
TRIM55-203ENST00000350034 PTPN23Q9H3S7 1636 aa10.25□□□□□ -0.77
TRIM55-203ENST00000350034 PTPRGP23470 1445 aa10.25□□□□□ -0.77
TRIM55-203ENST00000350034 HFM1A2PYH4 1435 aa10.24□□□□□ -0.77
TRIM55-203ENST00000350034 ATP10BO94823 1461 aa10.24□□□□□ -0.77
TRIM55-203ENST00000350034 CLASP1Q7Z460 1538 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms