RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 SOGA1O94964 1423 aa14.92□□□□□ -0.02
CAPN3-203ENST00000349748 PHF23Q9BUL5 403 aaPredicted RBP14.92□□□□□ -0.02
CAPN3-203ENST00000349748 RTL5Q5HYW3 569 aaPredicted RBP14.91□□□□□ -0.02
CAPN3-203ENST00000349748 CFTRP13569 1480 aa14.89□□□□□ -0.03
CAPN3-203ENST00000349748 RUSC2Q8N2Y8 1516 aa14.87□□□□□ -0.03
CAPN3-203ENST00000349748 PODXL2Q9NZ53 605 aa14.87□□□□□ -0.03
CAPN3-203ENST00000349748 TIMELESSQ9UNS1 1208 aa14.84□□□□□ -0.03
CAPN3-203ENST00000349748 TNIKQ9UKE5 1360 aa14.83□□□□□ -0.04
CAPN3-203ENST00000349748 UBTFP17480 764 aaKnown RBP14.78□□□□□ -0.04
CAPN3-203ENST00000349748 FANCD2Q9BXW9 1451 aa14.78□□□□□ -0.04
CAPN3-203ENST00000349748 DDX10Q13206 875 aaKnown RBP14.78□□□□□ -0.04
CAPN3-203ENST00000349748 BRPF3Q9ULD4 1205 aa14.77□□□□□ -0.04
CAPN3-203ENST00000349748 ERCC6Q03468 1493 aa14.77□□□□□ -0.05
CAPN3-203ENST00000349748 LAMC3Q9Y6N6 1575 aa14.74□□□□□ -0.05
CAPN3-203ENST00000349748 ZMYND15Q9H091 742 aa14.73□□□□□ -0.05
CAPN3-203ENST00000349748 PDS5BQ9NTI5 1447 aa14.72□□□□□ -0.05
CAPN3-203ENST00000349748 DHX57Q6P158 1386 aaKnown RBP14.72□□□□□ -0.05
CAPN3-203ENST00000349748 DAXXQ9UER7 740 aaPredicted RBP14.71□□□□□ -0.05
CAPN3-203ENST00000349748 EEA1Q15075 1411 aa14.71□□□□□ -0.05
CAPN3-203ENST00000349748 B4GALNT3Q6L9W6 998 aa14.71□□□□□ -0.05
CAPN3-203ENST00000349748 SYNJ1O43426 1573 aa14.7□□□□□ -0.06
CAPN3-203ENST00000349748 GOLGA3Q08378 1498 aa14.7□□□□□ -0.06
CAPN3-203ENST00000349748 WASHC2AQ641Q2 1341 aa14.69□□□□□ -0.06
CAPN3-203ENST00000349748 VSIG10Q8N0Z9 540 aa14.69□□□□□ -0.06
CAPN3-203ENST00000349748 IPO9Q96P70 1041 aaKnown RBP14.68□□□□□ -0.06
CAPN3-203ENST00000349748 ZBTB47Q9UFB7 747 aaPredicted RBP14.68□□□□□ -0.06
CAPN3-203ENST00000349748 C11orf95C9JLR9 678 aaPredicted RBP14.68□□□□□ -0.06
CAPN3-203ENST00000349748 CEP164Q9UPV0 1460 aa14.68□□□□□ -0.06
CAPN3-203ENST00000349748 PPP4R2Q9NY27 417 aa14.67□□□□□ -0.06
CAPN3-203ENST00000349748 CUX1P39880 1505 aa14.66□□□□□ -0.06
CAPN3-203ENST00000349748 KIF21AQ7Z4S6 1674 aa14.66□□□□□ -0.06
CAPN3-203ENST00000349748 ANP32AP39687 249 aaKnown RBP14.65□□□□□ -0.06
CAPN3-203ENST00000349748 NEFMP07197 916 aa14.64□□□□□ -0.07
CAPN3-203ENST00000349748 LAS1LQ9Y4W2 734 aaKnown RBP14.64□□□□□ -0.07
CAPN3-203ENST00000349748 WASHC2CQ9Y4E1 1318 aa14.63□□□□□ -0.07
CAPN3-203ENST00000349748 HNRNPUQ00839 825 aaKnown RBP eCLIP14.6□□□□□ -0.07
CAPN3-203ENST00000349748 RSPH6AQ9H0K4 717 aa14.6□□□□□ -0.07
CAPN3-203ENST00000349748 GLIPR1L2Q4G1C9 344 aa14.59□□□□□ -0.07
CAPN3-203ENST00000349748 CCER2I3L3R5 266 aa14.59□□□□□ -0.07
CAPN3-203ENST00000349748 HIRIP3Q9BW71 556 aaPredicted RBP14.58□□□□□ -0.07
CAPN3-203ENST00000349748 CLIP1P30622 1438 aa14.58□□□□□ -0.08
CAPN3-203ENST00000349748 ANP32CO43423 234 aa14.58□□□□□ -0.08
CAPN3-203ENST00000349748 PPP1R15AO75807 674 aaPredicted RBP14.58□□□□□ -0.08
CAPN3-203ENST00000349748 URB2Q14146 1524 aaKnown RBP14.57□□□□□ -0.08
CAPN3-203ENST00000349748 TOP2BQ02880 1626 aa14.57□□□□□ -0.08
CAPN3-203ENST00000349748 FGD5Q6ZNL6 1462 aa14.57□□□□□ -0.08
CAPN3-203ENST00000349748 KIF21BO75037 1637 aa14.56□□□□□ -0.08
CAPN3-203ENST00000349748 TOPBP1Q92547 1522 aa14.56□□□□□ -0.08
CAPN3-203ENST00000349748 RAD54L2Q9Y4B4 1467 aa14.56□□□□□ -0.08
CAPN3-203ENST00000349748 PRDM2Q13029 1718 aa14.55□□□□□ -0.08
CAPN3-203ENST00000349748 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
CAPN3-203ENST00000349748 RANGAP1P46060 587 aaPredicted RBP14.53□□□□□ -0.08
CAPN3-203ENST00000349748 VPS8Q8N3P4 1428 aa14.53□□□□□ -0.08
CAPN3-203ENST00000349748 RAPGEF2Q9Y4G8 1499 aa14.53□□□□□ -0.08
CAPN3-203ENST00000349748 NPM2Q86SE8 214 aaKnown RBP14.51□□□□□ -0.09
CAPN3-203ENST00000349748 CUX2O14529 1486 aa14.51□□□□□ -0.09
CAPN3-203ENST00000349748 A0A0U1RQG5 324 aaPredicted RBP14.51□□□□□ -0.09
CAPN3-203ENST00000349748 POLA1P09884 1462 aaPredicted RBP14.5□□□□□ -0.09
CAPN3-203ENST00000349748 TDRD9Q8NDG6 1382 aaKnown RBP14.5□□□□□ -0.09
CAPN3-203ENST00000349748 USP35Q9P2H5 1018 aa14.5□□□□□ -0.09
CAPN3-203ENST00000349748 DNMBPQ6XZF7 1577 aa14.5□□□□□ -0.09
CAPN3-203ENST00000349748 SIN3AQ96ST3 1273 aa14.49□□□□□ -0.09
CAPN3-203ENST00000349748 BIVM-ERCC5R4GMW8 1640 aa14.49□□□□□ -0.09
CAPN3-203ENST00000349748 GSE1Q14687 1217 aa14.48□□□□□ -0.09
CAPN3-203ENST00000349748 THOC2Q8NI27 1593 aaKnown RBP14.47□□□□□ -0.09
CAPN3-203ENST00000349748 KIF27Q86VH2 1401 aa14.46□□□□□ -0.09
CAPN3-203ENST00000349748 FRAT1Q92837 279 aaPredicted RBP14.44□□□□□ -0.1
CAPN3-203ENST00000349748 WDR62O43379 1518 aa14.42□□□□□ -0.1
CAPN3-203ENST00000349748 FAM43AQ8N2R8 423 aa14.41□□□□□ -0.1
CAPN3-203ENST00000349748 AQRO60306 1485 aaKnown RBP eCLIP14.39□□□□□ -0.11
CAPN3-203ENST00000349748 DCAF11Q8TEB1 546 aa14.38□□□□□ -0.11
CAPN3-203ENST00000349748 PPM1GO15355 546 aaPredicted RBP14.37□□□□□ -0.11
CAPN3-203ENST00000349748 RBM10P98175 930 aaKnown RBP14.37□□□□□ -0.11
CAPN3-203ENST00000349748 IGF1RP08069 1367 aa14.37□□□□□ -0.11
CAPN3-203ENST00000349748 WDR97A6NE52 1622 aa14.36□□□□□ -0.11
CAPN3-203ENST00000349748 HSP90AA2PQ14568 343 aaPredicted RBP14.36□□□□□ -0.11
CAPN3-203ENST00000349748 KANK4Q5T7N3 995 aaPredicted RBP14.35□□□□□ -0.11
CAPN3-203ENST00000349748 ZNF608Q9ULD9 1512 aaPredicted RBP14.35□□□□□ -0.11
CAPN3-203ENST00000349748 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
CAPN3-203ENST00000349748 FBLN2P98095 1184 aa14.34□□□□□ -0.11
CAPN3-203ENST00000349748 ABCA10Q8WWZ4 1543 aa14.34□□□□□ -0.11
CAPN3-203ENST00000349748 CARMIL1Q5VZK9 1371 aa14.33□□□□□ -0.12
CAPN3-203ENST00000349748 NFKBIBQ15653 356 aa14.32□□□□□ -0.12
CAPN3-203ENST00000349748 GAPVD1Q14C86 1478 aa14.31□□□□□ -0.12
CAPN3-203ENST00000349748 RRAGDQ9NQL2 400 aaPredicted RBP14.31□□□□□ -0.12
CAPN3-203ENST00000349748 AAMPQ13685 434 aa14.31□□□□□ -0.12
CAPN3-203ENST00000349748 FGD1P98174 961 aa14.29□□□□□ -0.12
CAPN3-203ENST00000349748 PRXQ9BXM0 1461 aa14.29□□□□□ -0.12
CAPN3-203ENST00000349748 IFT140Q96RY7 1462 aa14.29□□□□□ -0.12
CAPN3-203ENST00000349748 NAP1L5Q96NT1 182 aaPredicted RBP14.28□□□□□ -0.12
CAPN3-203ENST00000349748 CCDC184Q52MB2 194 aa14.28□□□□□ -0.12
CAPN3-203ENST00000349748 RRP9O43818 475 aaKnown RBP14.27□□□□□ -0.13
CAPN3-203ENST00000349748 ERICH3Q5RHP9 1530 aa14.26□□□□□ -0.13
CAPN3-203ENST00000349748 PDE4CQ08493 712 aa14.26□□□□□ -0.13
CAPN3-203ENST00000349748 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
CAPN3-203ENST00000349748 MAPKBP1O60336 1514 aa14.26□□□□□ -0.13
CAPN3-203ENST00000349748 HSP90AA1P07900 732 aaKnown RBP14.25□□□□□ -0.13
CAPN3-203ENST00000349748 FAM9BQ8IZU0 186 aa14.25□□□□□ -0.13
CAPN3-203ENST00000349748 SLC4A3P48751 1232 aa14.25□□□□□ -0.13
CAPN3-203ENST00000349748 RRBP1Q9P2E9 1410 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms