RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 NISCHQ9Y2I1 1504 aa20.23■□□□□ 0.83
CAPN3-203ENST00000349748 PELP1Q8IZL8 1130 aaKnown RBP18.46■□□□□ 0.55
CAPN3-203ENST00000349748 HRCP23327 699 aa18.25■□□□□ 0.51
CAPN3-203ENST00000349748 PPARGC1BQ86YN6 1023 aaKnown RBP18.02■□□□□ 0.47
CAPN3-203ENST00000349748 MYT1Q01538 1121 aa17.87■□□□□ 0.45
CAPN3-203ENST00000349748 SCAF1Q9H7N4 1312 aaKnown RBP17.72■□□□□ 0.43
CAPN3-203ENST00000349748 PCGF6Q9BYE7 350 aa17.65■□□□□ 0.42
CAPN3-203ENST00000349748 CCDC180Q9P1Z9 1646 aa17.48■□□□□ 0.39
CAPN3-203ENST00000349748 DCAF8L2P0C7V8 631 aa17.3■□□□□ 0.36
CAPN3-203ENST00000349748 ABCC9O60706 1549 aa17.2■□□□□ 0.34
CAPN3-203ENST00000349748 MYO15BQ96JP2 1530 aa17.14■□□□□ 0.33
CAPN3-203ENST00000349748 SHROOM4Q9ULL8 1493 aa17.04■□□□□ 0.32
CAPN3-203ENST00000349748 ACIN1Q9UKV3 1341 aaKnown RBP17■□□□□ 0.31
CAPN3-203ENST00000349748 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
CAPN3-203ENST00000349748 GTF3C3Q9Y5Q9 886 aa16.96■□□□□ 0.31
CAPN3-203ENST00000349748 TTBK1Q5TCY1 1321 aaPredicted RBP16.93■□□□□ 0.3
CAPN3-203ENST00000349748 SUPT5HO00267 1087 aaKnown RBP16.92■□□□□ 0.3
CAPN3-203ENST00000349748 ZCCHC6Q5VYS8 1495 aaKnown RBP16.92■□□□□ 0.3
CAPN3-203ENST00000349748 BCL11AQ9H165 835 aa16.89■□□□□ 0.29
CAPN3-203ENST00000349748 FAM9AQ8IZU1 332 aaPredicted RBP16.78■□□□□ 0.28
CAPN3-203ENST00000349748 CHIC1Q5VXU3 224 aa16.77■□□□□ 0.27
CAPN3-203ENST00000349748 ZEB1P37275 1124 aaPredicted RBP16.76■□□□□ 0.27
CAPN3-203ENST00000349748 TRIM26Q12899 539 aaPredicted RBP16.76■□□□□ 0.27
CAPN3-203ENST00000349748 PRKCSHP14314 528 aaPredicted RBP16.74■□□□□ 0.27
CAPN3-203ENST00000349748 DCAF1Q9Y4B6 1507 aa16.7■□□□□ 0.26
CAPN3-203ENST00000349748 CENPBP07199 599 aaPredicted RBP16.69■□□□□ 0.26
CAPN3-203ENST00000349748 LOC105371045A0A1W2PR82 267 aa16.58■□□□□ 0.24
CAPN3-203ENST00000349748 NACADO15069 1562 aa16.44■□□□□ 0.22
CAPN3-203ENST00000349748 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
CAPN3-203ENST00000349748 ANP32EQ9BTT0 268 aa16.39■□□□□ 0.21
CAPN3-203ENST00000349748 SCRIBQ14160 1630 aa16.37■□□□□ 0.21
CAPN3-203ENST00000349748 DIEXFQ68CQ4 756 aaKnown RBP16.36■□□□□ 0.21
CAPN3-203ENST00000349748 CSRNP3Q8WYN3 585 aa16.32■□□□□ 0.2
CAPN3-203ENST00000349748 YTHDC1Q96MU7 727 aaKnown RBP16.31■□□□□ 0.2
CAPN3-203ENST00000349748 AEBP2Q6ZN18 517 aaPredicted RBP16.27■□□□□ 0.19
CAPN3-203ENST00000349748 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
CAPN3-203ENST00000349748 ERICH6Q7L0X2 663 aa16.15■□□□□ 0.18
CAPN3-203ENST00000349748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.13■□□□□ 0.17
CAPN3-203ENST00000349748 TSHZ2Q9NRE2 1034 aa16.07■□□□□ 0.16
CAPN3-203ENST00000349748 UNC13AQ9UPW8 1703 aa16.07■□□□□ 0.16
CAPN3-203ENST00000349748 APLP2Q06481 763 aa16.06■□□□□ 0.16
CAPN3-203ENST00000349748 CCER1Q8TC90 406 aaPredicted RBP16.06■□□□□ 0.16
CAPN3-203ENST00000349748 TRIM41Q8WV44 630 aa15.99■□□□□ 0.15
CAPN3-203ENST00000349748 BICRAQ9NZM4 1560 aa15.96■□□□□ 0.15
CAPN3-203ENST00000349748 SUPT16HQ9Y5B9 1047 aaKnown RBP15.95■□□□□ 0.14
CAPN3-203ENST00000349748 MIER1Q8N108 512 aa15.93■□□□□ 0.14
CAPN3-203ENST00000349748 CECR2Q9BXF3 1484 aa15.88■□□□□ 0.13
CAPN3-203ENST00000349748 ZNF316A6NFI3 1004 aaPredicted RBP15.84■□□□□ 0.13
CAPN3-203ENST00000349748 ANO8Q9HCE9 1232 aaPredicted RBP15.83■□□□□ 0.12
CAPN3-203ENST00000349748 EHMT2Q96KQ7 1210 aa15.78■□□□□ 0.12
CAPN3-203ENST00000349748 RSF1Q96T23 1441 aaPredicted RBP15.73■□□□□ 0.11
CAPN3-203ENST00000349748 MROH2BQ7Z745 1585 aa15.7■□□□□ 0.1
CAPN3-203ENST00000349748 CLSPNQ9HAW4 1339 aa15.65■□□□□ 0.1
CAPN3-203ENST00000349748 BCANQ96GW7 911 aa15.63■□□□□ 0.09
CAPN3-203ENST00000349748 RBM19Q9Y4C8 960 aaKnown RBP15.62■□□□□ 0.09
CAPN3-203ENST00000349748 BAZ1AQ9NRL2 1556 aaPredicted RBP15.6■□□□□ 0.09
CAPN3-203ENST00000349748 MSH5O43196 834 aa15.6■□□□□ 0.09
CAPN3-203ENST00000349748 DNAJC5BQ9UF47 199 aa15.59■□□□□ 0.09
CAPN3-203ENST00000349748 SALL2Q9Y467 1007 aaPredicted RBP15.57■□□□□ 0.08
CAPN3-203ENST00000349748 CCDC136Q96JN2 1154 aa15.57■□□□□ 0.08
CAPN3-203ENST00000349748 EIF4G1Q04637 1599 aaKnown RBP15.55■□□□□ 0.08
CAPN3-203ENST00000349748 SMARCA4P51532 1647 aa15.54■□□□□ 0.08
CAPN3-203ENST00000349748 WIZO95785 1651 aa15.53■□□□□ 0.08
CAPN3-203ENST00000349748 DEKP35659 375 aaKnown RBP15.48■□□□□ 0.07
CAPN3-203ENST00000349748 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
CAPN3-203ENST00000349748 UBE2Q2Q8WVN8 375 aa15.42■□□□□ 0.06
CAPN3-203ENST00000349748 ATAD2BQ9ULI0 1458 aa15.41■□□□□ 0.06
CAPN3-203ENST00000349748 FKBP8Q14318 412 aa15.4■□□□□ 0.06
CAPN3-203ENST00000349748 ITGAEP38570 1179 aa15.39■□□□□ 0.05
CAPN3-203ENST00000349748 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.36■□□□□ 0.05
CAPN3-203ENST00000349748 BAZ1BQ9UIG0 1483 aaKnown RBP15.35■□□□□ 0.05
CAPN3-203ENST00000349748 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
CAPN3-203ENST00000349748 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
CAPN3-203ENST00000349748 MYT1LQ9UL68 1186 aa15.27■□□□□ 0.03
CAPN3-203ENST00000349748 RTN4Q9NQC3 1192 aaKnown RBP15.26■□□□□ 0.03
CAPN3-203ENST00000349748 KCNH8Q96L42 1107 aa15.26■□□□□ 0.03
CAPN3-203ENST00000349748 CCDC88BA6NC98 1476 aa15.25■□□□□ 0.03
CAPN3-203ENST00000349748 NCAPD3P42695 1498 aa15.24■□□□□ 0.03
CAPN3-203ENST00000349748 FANCIQ9NVI1 1328 aa15.24■□□□□ 0.03
CAPN3-203ENST00000349748 ERICH6BQ5W0A0 696 aa15.24■□□□□ 0.03
CAPN3-203ENST00000349748 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
CAPN3-203ENST00000349748 IL27Q8NEV9 243 aa15.22■□□□□ 0.03
CAPN3-203ENST00000349748 EIF5BO60841 1220 aaKnown RBP15.2■□□□□ 0.02
CAPN3-203ENST00000349748 NBR1Q14596 966 aa15.19■□□□□ 0.02
CAPN3-203ENST00000349748 NEFLP07196 543 aa15.15■□□□□ 0.02
CAPN3-203ENST00000349748 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
CAPN3-203ENST00000349748 HNRNPUL2Q1KMD3 747 aaKnown RBP15.11■□□□□ 0.01
CAPN3-203ENST00000349748 PKNOX2Q96KN3 472 aa15.11■□□□□ 0.01
CAPN3-203ENST00000349748 PLEKHG5O94827 1062 aa15.06■□□□□ 0
CAPN3-203ENST00000349748 CDK11AQ9UQ88 783 aaPredicted RBP15.04■□□□□ -0
CAPN3-203ENST00000349748 ABCC8Q09428 1581 aa15.02□□□□□ -0.01
CAPN3-203ENST00000349748 PAK3O75914 559 aaPredicted RBP15□□□□□ -0.01
CAPN3-203ENST00000349748 TRIM52Q96A61 297 aa14.97□□□□□ -0.01
CAPN3-203ENST00000349748 NESP48681 1621 aa14.97□□□□□ -0.01
CAPN3-203ENST00000349748 NOP58Q9Y2X3 529 aaKnown RBP14.97□□□□□ -0.01
CAPN3-203ENST00000349748 SLC24A1O60721 1099 aa14.96□□□□□ -0.01
CAPN3-203ENST00000349748 IRX6P78412 446 aaPredicted RBP14.95□□□□□ -0.02
CAPN3-203ENST00000349748 CADPSQ9ULU8 1353 aa14.94□□□□□ -0.02
CAPN3-203ENST00000349748 WRNQ14191 1432 aaPredicted RBP eCLIP14.93□□□□□ -0.02
CAPN3-203ENST00000349748 CEP162Q5TB80 1403 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms