RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PEG3Q9GZU2 1588 aa9.61□□□□□ -0.87
VPS39-202ENST00000348544 FANCIQ9NVI1 1328 aa9.6□□□□□ -0.87
VPS39-202ENST00000348544 PIAS4Q8N2W9 510 aaPredicted RBP9.6□□□□□ -0.87
VPS39-202ENST00000348544 TOP2BQ02880 1626 aa9.6□□□□□ -0.87
VPS39-202ENST00000348544 CCER2I3L3R5 266 aa9.59□□□□□ -0.87
VPS39-202ENST00000348544 SIN3AQ96ST3 1273 aa9.59□□□□□ -0.88
VPS39-202ENST00000348544 HIRIP3Q9BW71 556 aaPredicted RBP9.57□□□□□ -0.88
VPS39-202ENST00000348544 BIVM-ERCC5R4GMW8 1640 aa9.55□□□□□ -0.88
VPS39-202ENST00000348544 ARHGAP35Q9NRY4 1499 aa9.55□□□□□ -0.88
VPS39-202ENST00000348544 SETD5Q9C0A6 1442 aa9.55□□□□□ -0.88
VPS39-202ENST00000348544 ANP32CO43423 234 aa9.54□□□□□ -0.88
VPS39-202ENST00000348544 PRKCSHP14314 528 aaPredicted RBP9.53□□□□□ -0.88
VPS39-202ENST00000348544 IRX6P78412 446 aaPredicted RBP9.53□□□□□ -0.88
VPS39-202ENST00000348544 ERICH6Q7L0X2 663 aa9.51□□□□□ -0.89
VPS39-202ENST00000348544 CDK11AQ9UQ88 783 aaPredicted RBP9.51□□□□□ -0.89
VPS39-202ENST00000348544 BICRAQ9NZM4 1560 aa9.51□□□□□ -0.89
VPS39-202ENST00000348544 ATAD2BQ9ULI0 1458 aa9.5□□□□□ -0.89
VPS39-202ENST00000348544 TIAM1Q13009 1591 aa9.5□□□□□ -0.89
VPS39-202ENST00000348544 DEKP35659 375 aaKnown RBP9.49□□□□□ -0.89
VPS39-202ENST00000348544 PABPN1Q86U42 306 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS39-202ENST00000348544 PHLDB1Q86UU1 1377 aa9.49□□□□□ -0.89
VPS39-202ENST00000348544 TIMELESSQ9UNS1 1208 aa9.49□□□□□ -0.89
VPS39-202ENST00000348544 HNRNPUQ00839 825 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS39-202ENST00000348544 MAP3K1Q13233 1512 aa9.46□□□□□ -0.89
VPS39-202ENST00000348544 MYT1LQ9UL68 1186 aa9.46□□□□□ -0.89
VPS39-202ENST00000348544 LRRC9Q6ZRR7 1453 aa9.46□□□□□ -0.9
VPS39-202ENST00000348544 CUX1P39880 1505 aa9.45□□□□□ -0.9
VPS39-202ENST00000348544 KIF27Q86VH2 1401 aa9.45□□□□□ -0.9
VPS39-202ENST00000348544 FAM50AQ14320 339 aaKnown RBP9.44□□□□□ -0.9
VPS39-202ENST00000348544 PPP4R2Q9NY27 417 aa9.43□□□□□ -0.9
VPS39-202ENST00000348544 ERICH6BQ5W0A0 696 aa9.41□□□□□ -0.9
VPS39-202ENST00000348544 PAK3O75914 559 aaPredicted RBP9.4□□□□□ -0.9
VPS39-202ENST00000348544 KDM5BQ9UGL1 1544 aa9.4□□□□□ -0.9
VPS39-202ENST00000348544 CFAP43Q8NDM7 1665 aa9.4□□□□□ -0.9
VPS39-202ENST00000348544 TONSLQ96HA7 1378 aa9.4□□□□□ -0.91
VPS39-202ENST00000348544 B4GALNT3Q6L9W6 998 aa9.39□□□□□ -0.91
VPS39-202ENST00000348544 CCDC184Q52MB2 194 aa9.39□□□□□ -0.91
VPS39-202ENST00000348544 NOP58Q9Y2X3 529 aaKnown RBP9.39□□□□□ -0.91
VPS39-202ENST00000348544 NBR1Q14596 966 aa9.38□□□□□ -0.91
VPS39-202ENST00000348544 ANO8Q9HCE9 1232 aaPredicted RBP9.38□□□□□ -0.91
VPS39-202ENST00000348544 FHAD1B1AJZ9 1412 aa9.37□□□□□ -0.91
VPS39-202ENST00000348544 PCF11O94913 1555 aaKnown RBP9.37□□□□□ -0.91
VPS39-202ENST00000348544 WASHC2AQ641Q2 1341 aa9.37□□□□□ -0.91
VPS39-202ENST00000348544 CCDC18Q5T9S5 1454 aa9.35□□□□□ -0.91
VPS39-202ENST00000348544 IGF1RP08069 1367 aa9.35□□□□□ -0.91
VPS39-202ENST00000348544 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS39-202ENST00000348544 NCOA2Q15596 1464 aa9.34□□□□□ -0.91
VPS39-202ENST00000348544 UACAQ9BZF9 1416 aa9.33□□□□□ -0.92
VPS39-202ENST00000348544 PTPRKQ15262 1439 aa9.33□□□□□ -0.92
VPS39-202ENST00000348544 AQRO60306 1485 aaKnown RBP eCLIP9.32□□□□□ -0.923e-6■■■■□ 25.1
VPS39-202ENST00000348544 HSPA5P11021 654 aaKnown RBP9.32□□□□□ -0.92
VPS39-202ENST00000348544 PTPN23Q9H3S7 1636 aa9.32□□□□□ -0.92
VPS39-202ENST00000348544 ZBED9Q6R2W3 1325 aa9.32□□□□□ -0.92
VPS39-202ENST00000348544 CNTLNQ9NXG0 1405 aa9.31□□□□□ -0.92
VPS39-202ENST00000348544 SALL2Q9Y467 1007 aaPredicted RBP9.31□□□□□ -0.92
VPS39-202ENST00000348544 HFM1A2PYH4 1435 aa9.31□□□□□ -0.92
VPS39-202ENST00000348544 FGD6Q6ZV73 1430 aa9.31□□□□□ -0.92
VPS39-202ENST00000348544 P3H3Q8IVL6 736 aa9.3□□□□□ -0.92
VPS39-202ENST00000348544 FAM9BQ8IZU0 186 aa9.3□□□□□ -0.92
VPS39-202ENST00000348544 CARMIL1Q5VZK9 1371 aa9.29□□□□□ -0.92
VPS39-202ENST00000348544 PRKRIP1Q9H875 184 aaPredicted RBP9.29□□□□□ -0.92
VPS39-202ENST00000348544 C11orf95C9JLR9 678 aaPredicted RBP9.28□□□□□ -0.92
VPS39-202ENST00000348544 IPO9Q96P70 1041 aaKnown RBP9.28□□□□□ -0.92
VPS39-202ENST00000348544 ATP1B4Q9UN42 357 aaPredicted RBP9.28□□□□□ -0.92
VPS39-202ENST00000348544 NAIPQ13075 1403 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 FHOD3Q2V2M9 1422 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 NCAPD3P42695 1498 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 FYCO1Q9BQS8 1478 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 IL27Q8NEV9 243 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 AKNAQ7Z591 1439 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 MRS2Q9HD23 443 aa9.28□□□□□ -0.92
VPS39-202ENST00000348544 CFTRP13569 1480 aa9.27□□□□□ -0.92
VPS39-202ENST00000348544 DENND4BO75064 1496 aaPredicted RBP9.27□□□□□ -0.93
VPS39-202ENST00000348544 CASKIN1Q8WXD9 1431 aa9.26□□□□□ -0.93
VPS39-202ENST00000348544 FGD5Q6ZNL6 1462 aa9.26□□□□□ -0.93
VPS39-202ENST00000348544 CCDC7Q96M83 1385 aa9.25□□□□□ -0.93
VPS39-202ENST00000348544 NCOA1Q15788 1441 aa9.25□□□□□ -0.93
VPS39-202ENST00000348544 ANP32AP39687 249 aaKnown RBP9.25□□□□□ -0.93
VPS39-202ENST00000348544 EIF4G2P78344 907 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS39-202ENST00000348544 RTL5Q5HYW3 569 aaPredicted RBP9.25□□□□□ -0.93
VPS39-202ENST00000348544 SMG6Q86US8 1419 aaKnown RBP9.25□□□□□ -0.93
VPS39-202ENST00000348544 RNF123Q5XPI4 1314 aa9.24□□□□□ -0.93
VPS39-202ENST00000348544 HMGXB3Q12766 1538 aa9.24□□□□□ -0.93
VPS39-202ENST00000348544 ZBTB47Q9UFB7 747 aaPredicted RBP9.24□□□□□ -0.93
VPS39-202ENST00000348544 CCDC136Q96JN2 1154 aa9.23□□□□□ -0.93
VPS39-202ENST00000348544 FMN1Q68DA7 1419 aa9.23□□□□□ -0.93
VPS39-202ENST00000348544 RTN4Q9NQC3 1192 aaKnown RBP9.23□□□□□ -0.93
VPS39-202ENST00000348544 PPP4R3CPQ6ZMV5 832 aa9.21□□□□□ -0.93
VPS39-202ENST00000348544 EFCAB5A4FU69 1503 aa9.21□□□□□ -0.94
VPS39-202ENST00000348544 SNAPC4Q5SXM2 1469 aa9.21□□□□□ -0.94
VPS39-202ENST00000348544 NUDCQ9Y266 331 aa9.2□□□□□ -0.94
VPS39-202ENST00000348544 HECW1Q76N89 1606 aa9.2□□□□□ -0.94
VPS39-202ENST00000348544 ABCA5Q8WWZ7 1642 aa9.2□□□□□ -0.94
VPS39-202ENST00000348544 LRRIQ1Q96JM4 1722 aa9.19□□□□□ -0.94
VPS39-202ENST00000348544 MYOM3Q5VTT5 1437 aa9.19□□□□□ -0.94
VPS39-202ENST00000348544 L3MBTL2Q969R5 705 aa9.19□□□□□ -0.94
VPS39-202ENST00000348544 KDM6BO15054 1643 aa9.19□□□□□ -0.94
VPS39-202ENST00000348544 PRDM2Q13029 1718 aa9.19□□□□□ -0.94
VPS39-202ENST00000348544 KIF7Q2M1P5 1343 aa9.19□□□□□ -0.94
VPS39-202ENST00000348544 MTUS2Q5JR59 1369 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms