RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 LRRC9Q6ZRR7 1453 aa22.94■■□□□ 1.26
UPF3B-202ENST00000345865 FHAD1B1AJZ9 1412 aa22.93■■□□□ 1.26
UPF3B-202ENST00000345865 PDS5BQ9NTI5 1447 aa22.93■■□□□ 1.26
UPF3B-202ENST00000345865 FHOD3Q2V2M9 1422 aa22.93■■□□□ 1.26
UPF3B-202ENST00000345865 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
UPF3B-202ENST00000345865 KIF21AQ7Z4S6 1674 aa22.92■■□□□ 1.26
UPF3B-202ENST00000345865 CTTNBP2Q8WZ74 1663 aa22.91■■□□□ 1.26
UPF3B-202ENST00000345865 ABCA5Q8WWZ7 1642 aa22.91■■□□□ 1.26
UPF3B-202ENST00000345865 CLSPNQ9HAW4 1339 aa22.89■■□□□ 1.25
UPF3B-202ENST00000345865 ITGAEP38570 1179 aa22.88■■□□□ 1.25
UPF3B-202ENST00000345865 CFAP43Q8NDM7 1665 aa22.88■■□□□ 1.25
UPF3B-202ENST00000345865 PHLDB1Q86UU1 1377 aa22.87■■□□□ 1.25
UPF3B-202ENST00000345865 EFCAB5A4FU69 1503 aa22.87■■□□□ 1.25
UPF3B-202ENST00000345865 SCAF1Q9H7N4 1312 aaKnown RBP22.86■■□□□ 1.25
UPF3B-202ENST00000345865 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
UPF3B-202ENST00000345865 ATP1B4Q9UN42 357 aaPredicted RBP22.83■■□□□ 1.25
UPF3B-202ENST00000345865 FYCO1Q9BQS8 1478 aa22.81■■□□□ 1.24
UPF3B-202ENST00000345865 CASKIN1Q8WXD9 1431 aa22.8■■□□□ 1.24
UPF3B-202ENST00000345865 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
UPF3B-202ENST00000345865 AQRO60306 1485 aaKnown RBP eCLIP22.78■■□□□ 1.245e-10■■■■■ 36.7
UPF3B-202ENST00000345865 RAB3GAP2Q9H2M9 1393 aa22.76■■□□□ 1.23
UPF3B-202ENST00000345865 NEUROD1Q13562 356 aa22.76■■□□□ 1.23
UPF3B-202ENST00000345865 ACIN1Q9UKV3 1341 aaKnown RBP22.74■■□□□ 1.23
UPF3B-202ENST00000345865 SNAPC4Q5SXM2 1469 aa22.73■■□□□ 1.23
UPF3B-202ENST00000345865 SAMD9Q5K651 1589 aa22.73■■□□□ 1.23
UPF3B-202ENST00000345865 FMN1Q68DA7 1419 aa22.72■■□□□ 1.23
UPF3B-202ENST00000345865 FAM50AQ14320 339 aaKnown RBP22.71■■□□□ 1.23
UPF3B-202ENST00000345865 MIER1Q8N108 512 aa22.68■■□□□ 1.22
UPF3B-202ENST00000345865 SETD5Q9C0A6 1442 aa22.67■■□□□ 1.22
UPF3B-202ENST00000345865 LRRIQ1Q96JM4 1722 aa22.67■■□□□ 1.22
UPF3B-202ENST00000345865 MAPKBP1O60336 1514 aa22.66■■□□□ 1.22
UPF3B-202ENST00000345865 PBRM1Q86U86 1689 aa22.64■■□□□ 1.21
UPF3B-202ENST00000345865 MRC2Q9UBG0 1479 aa22.61■■□□□ 1.21
UPF3B-202ENST00000345865 GRIN2BQ13224 1484 aa22.61■■□□□ 1.21
UPF3B-202ENST00000345865 CENPBP07199 599 aaPredicted RBP22.58■■□□□ 1.21
UPF3B-202ENST00000345865 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.57■■□□□ 1.2
UPF3B-202ENST00000345865 MTUS2Q5JR59 1369 aa22.56■■□□□ 1.2
UPF3B-202ENST00000345865 FGD6Q6ZV73 1430 aa22.56■■□□□ 1.2
UPF3B-202ENST00000345865 ADAMTS12P58397 1594 aa22.55■■□□□ 1.2
UPF3B-202ENST00000345865 THOC2Q8NI27 1593 aaKnown RBP22.51■■□□□ 1.19
UPF3B-202ENST00000345865 ZNF608Q9ULD9 1512 aaPredicted RBP22.51■■□□□ 1.19
UPF3B-202ENST00000345865 YTHDC1Q96MU7 727 aaKnown RBP22.5■■□□□ 1.19
UPF3B-202ENST00000345865 NCOA2Q15596 1464 aa22.49■■□□□ 1.19
UPF3B-202ENST00000345865 IQGAP2Q13576 1575 aa22.49■■□□□ 1.19
UPF3B-202ENST00000345865 PTPRKQ15262 1439 aa22.48■■□□□ 1.19
UPF3B-202ENST00000345865 MAGI3Q5TCQ9 1506 aa22.48■■□□□ 1.19
UPF3B-202ENST00000345865 SIN3AQ96ST3 1273 aa22.47■■□□□ 1.19
UPF3B-202ENST00000345865 WDR62O43379 1518 aa22.45■■□□□ 1.18
UPF3B-202ENST00000345865 GTF3C3Q9Y5Q9 886 aa22.45■■□□□ 1.18
UPF3B-202ENST00000345865 IFT140Q96RY7 1462 aa22.44■■□□□ 1.18
UPF3B-202ENST00000345865 SUPT6HQ7KZ85 1726 aaKnown RBP22.44■■□□□ 1.18
UPF3B-202ENST00000345865 EHBP1L1Q8N3D4 1523 aa22.44■■□□□ 1.18
UPF3B-202ENST00000345865 MYOM3Q5VTT5 1437 aa22.44■■□□□ 1.18
UPF3B-202ENST00000345865 ARHGEF11O15085 1522 aa22.41■■□□□ 1.18
UPF3B-202ENST00000345865 UGGT2Q9NYU1 1516 aa22.41■■□□□ 1.18
UPF3B-202ENST00000345865 CCDC18Q5T9S5 1454 aa22.39■■□□□ 1.17
UPF3B-202ENST00000345865 HECW1Q76N89 1606 aa22.38■■□□□ 1.17
UPF3B-202ENST00000345865 HFM1A2PYH4 1435 aa22.37■■□□□ 1.17
UPF3B-202ENST00000345865 EPRSP07814 1512 aaKnown RBP22.37■■□□□ 1.17
UPF3B-202ENST00000345865 PTPN23Q9H3S7 1636 aa22.35■■□□□ 1.17
UPF3B-202ENST00000345865 CDK13Q14004 1512 aaKnown RBP22.34■■□□□ 1.17
UPF3B-202ENST00000345865 EIF4G3O43432 1585 aaKnown RBP22.33■■□□□ 1.16
UPF3B-202ENST00000345865 NAIPQ13075 1403 aa22.33■■□□□ 1.16
UPF3B-202ENST00000345865 ARID3CA6NKF2 412 aa22.3■■□□□ 1.16
UPF3B-202ENST00000345865 DISP1Q96F81 1524 aa22.3■■□□□ 1.16
UPF3B-202ENST00000345865 KIAA0586Q9BVV6 1533 aa22.3■■□□□ 1.16
UPF3B-202ENST00000345865 UACAQ9BZF9 1416 aa22.28■■□□□ 1.16
UPF3B-202ENST00000345865 GRIN2AQ12879 1464 aa22.27■■□□□ 1.16
UPF3B-202ENST00000345865 TIMELESSQ9UNS1 1208 aa22.27■■□□□ 1.16
UPF3B-202ENST00000345865 TCOF1Q13428 1488 aaKnown RBP22.27■■□□□ 1.16
UPF3B-202ENST00000345865 KIAA0556O60303 1618 aa22.27■■□□□ 1.16
UPF3B-202ENST00000345865 ERCC6Q03468 1493 aa22.26■■□□□ 1.15
UPF3B-202ENST00000345865 PPP1R15AO75807 674 aaPredicted RBP22.24■■□□□ 1.15
UPF3B-202ENST00000345865 CHIC2Q9UKJ5 165 aa22.21■■□□□ 1.15
UPF3B-202ENST00000345865 RRP7BPQ9NSQ0 103 aa22.2■■□□□ 1.15
UPF3B-202ENST00000345865 NUP153P49790 1475 aaKnown RBP22.19■■□□□ 1.14
UPF3B-202ENST00000345865 MIA2Q96PC5 1412 aa22.18■■□□□ 1.14
UPF3B-202ENST00000345865 MAGI1Q96QZ7 1491 aaPredicted RBP22.17■■□□□ 1.14
UPF3B-202ENST00000345865 CEP170Q5SW79 1584 aa22.16■■□□□ 1.14
UPF3B-202ENST00000345865 KDM6BO15054 1643 aa22.15■■□□□ 1.14
UPF3B-202ENST00000345865 GCC2Q8IWJ2 1684 aa22.15■■□□□ 1.14
UPF3B-202ENST00000345865 RAPGEF6Q8TEU7 1601 aa22.15■■□□□ 1.14
UPF3B-202ENST00000345865 SYNJ2O15056 1496 aa22.13■■□□□ 1.13
UPF3B-202ENST00000345865 DENND4BO75064 1496 aaPredicted RBP22.13■■□□□ 1.13
UPF3B-202ENST00000345865 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
UPF3B-202ENST00000345865 HIRIP3Q9BW71 556 aaPredicted RBP22.13■■□□□ 1.13
UPF3B-202ENST00000345865 TONSLQ96HA7 1378 aa22.13■■□□□ 1.13
UPF3B-202ENST00000345865 AKNAQ7Z591 1439 aa22.1■■□□□ 1.13
UPF3B-202ENST00000345865 DDX10Q13206 875 aaKnown RBP22.1■■□□□ 1.13
UPF3B-202ENST00000345865 FBLN2P98095 1184 aa22.08■■□□□ 1.13
UPF3B-202ENST00000345865 KDM5BQ9UGL1 1544 aa22.08■■□□□ 1.13
UPF3B-202ENST00000345865 KCNH8Q96L42 1107 aa22.07■■□□□ 1.12
UPF3B-202ENST00000345865 ZNF644Q9H582 1327 aaPredicted RBP22.07■■□□□ 1.12
UPF3B-202ENST00000345865 PLB1Q6P1J6 1458 aa22.06■■□□□ 1.12
UPF3B-202ENST00000345865 DAPK1P53355 1430 aa22.04■■□□□ 1.12
UPF3B-202ENST00000345865 NUP160Q12769 1436 aa22.04■■□□□ 1.12
UPF3B-202ENST00000345865 PRG4Q92954 1404 aaPredicted RBP22.03■■□□□ 1.12
UPF3B-202ENST00000345865 TRIM52Q96A61 297 aa22.03■■□□□ 1.12
UPF3B-202ENST00000345865 ABCC5O15440 1437 aa22.02■■□□□ 1.12
UPF3B-202ENST00000345865 DNMT1P26358 1616 aaKnown RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms