RNA–Protein interactions for RNA: ENST00000345795.6

CASC4-202, Transcript of cancer susceptibility 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CASC4, Length 3,764 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-202ENST00000345795 IGF1RP08069 1367 aa18.97■□□□□ 0.63
CASC4-202ENST00000345795 CCNB3Q8WWL7 1395 aa18.96■□□□□ 0.63
CASC4-202ENST00000345795 FANCD2Q9BXW9 1451 aa18.94■□□□□ 0.62
CASC4-202ENST00000345795 FGD5Q6ZNL6 1462 aa18.93■□□□□ 0.62
CASC4-202ENST00000345795 NCAPD3P42695 1498 aa18.93■□□□□ 0.62
CASC4-202ENST00000345795 KCNH8Q96L42 1107 aa18.9■□□□□ 0.62
CASC4-202ENST00000345795 CUX1P39880 1505 aa18.9■□□□□ 0.62
CASC4-202ENST00000345795 ARAP1Q96P48 1450 aa18.9■□□□□ 0.62
CASC4-202ENST00000345795 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.89■□□□□ 0.611e-6■■■□□ 16.9
CASC4-202ENST00000345795 TONSLQ96HA7 1378 aa18.86■□□□□ 0.61
CASC4-202ENST00000345795 KDM2AQ9Y2K7 1162 aa18.86■□□□□ 0.61
CASC4-202ENST00000345795 KIF21BO75037 1637 aa18.85■□□□□ 0.61
CASC4-202ENST00000345795 RAB3GAP2Q9H2M9 1393 aa18.84■□□□□ 0.61
CASC4-202ENST00000345795 ERCC6Q03468 1493 aa18.81■□□□□ 0.6
CASC4-202ENST00000345795 CFTRP13569 1480 aa18.8■□□□□ 0.6
CASC4-202ENST00000345795 CC2D2AQ9P2K1 1620 aa18.8■□□□□ 0.6
CASC4-202ENST00000345795 ANP32CO43423 234 aa18.79■□□□□ 0.6
CASC4-202ENST00000345795 NEFLP07196 543 aa18.78■□□□□ 0.6
CASC4-202ENST00000345795 AQRO60306 1485 aaKnown RBP eCLIP18.78■□□□□ 0.68e-8■■■■■ 39.5
CASC4-202ENST00000345795 IRX6P78412 446 aaPredicted RBP18.78■□□□□ 0.6
CASC4-202ENST00000345795 SALL2Q9Y467 1007 aaPredicted RBP18.75■□□□□ 0.59
CASC4-202ENST00000345795 SLC4A1APQ9BWU0 796 aaKnown RBP18.75■□□□□ 0.59
CASC4-202ENST00000345795 DHX57Q6P158 1386 aaKnown RBP18.74■□□□□ 0.59
CASC4-202ENST00000345795 PHLDB1Q86UU1 1377 aa18.73■□□□□ 0.59
CASC4-202ENST00000345795 ARHGAP35Q9NRY4 1499 aa18.72■□□□□ 0.59
CASC4-202ENST00000345795 RGL3Q3MIN7 710 aa18.72■□□□□ 0.59
CASC4-202ENST00000345795 PDS5BQ9NTI5 1447 aa18.72■□□□□ 0.59
CASC4-202ENST00000345795 FAM9BQ8IZU0 186 aa18.72■□□□□ 0.59
CASC4-202ENST00000345795 CDK11AQ9UQ88 783 aaPredicted RBP18.71■□□□□ 0.59
CASC4-202ENST00000345795 CFDP1Q9UEE9 299 aaPredicted RBP18.7■□□□□ 0.58
CASC4-202ENST00000345795 ZNF644Q9H582 1327 aaPredicted RBP18.7■□□□□ 0.58
CASC4-202ENST00000345795 PRXQ9BXM0 1461 aa18.69■□□□□ 0.58
CASC4-202ENST00000345795 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
CASC4-202ENST00000345795 PELP1Q8IZL8 1130 aaKnown RBP18.67■□□□□ 0.58
CASC4-202ENST00000345795 HNRNPUQ00839 825 aaKnown RBP eCLIP18.65■□□□□ 0.58
CASC4-202ENST00000345795 FKBP8Q14318 412 aa18.64■□□□□ 0.58
CASC4-202ENST00000345795 FHAD1B1AJZ9 1412 aa18.63■□□□□ 0.57
CASC4-202ENST00000345795 SETD5Q9C0A6 1442 aa18.62■□□□□ 0.57
CASC4-202ENST00000345795 POLA1P09884 1462 aaPredicted RBP18.61■□□□□ 0.57
CASC4-202ENST00000345795 PLEKHD1A6NEE1 506 aa18.6■□□□□ 0.57
CASC4-202ENST00000345795 GAPVD1Q14C86 1478 aa18.57■□□□□ 0.56
CASC4-202ENST00000345795 TSPY4P0CV99 314 aa18.56■□□□□ 0.56
CASC4-202ENST00000345795 TSPY10P0CW01 314 aa18.56■□□□□ 0.56
CASC4-202ENST00000345795 PLPPR3Q6T4P5 718 aa18.56■□□□□ 0.56
CASC4-202ENST00000345795 PEG3Q9GZU2 1588 aa18.56■□□□□ 0.56
CASC4-202ENST00000345795 CHGAP10645 457 aaKnown RBP18.55■□□□□ 0.56
CASC4-202ENST00000345795 TOPBP1Q92547 1522 aa18.54■□□□□ 0.56
CASC4-202ENST00000345795 HMGXB3Q12766 1538 aa18.54■□□□□ 0.56
CASC4-202ENST00000345795 JPH4Q96JJ6 628 aa18.52■□□□□ 0.56
CASC4-202ENST00000345795 HNRNPMP52272 730 aaKnown RBP eCLIP18.51■□□□□ 0.55
CASC4-202ENST00000345795 MPHOSPH9Q99550 1183 aa18.47■□□□□ 0.55
CASC4-202ENST00000345795 EIF4G2P78344 907 aaKnown RBP eCLIP18.46■□□□□ 0.55
CASC4-202ENST00000345795 L3MBTL2Q969R5 705 aa18.46■□□□□ 0.55
CASC4-202ENST00000345795 FMN1Q68DA7 1419 aa18.46■□□□□ 0.54
CASC4-202ENST00000345795 PPP1R15AO75807 674 aaPredicted RBP18.45■□□□□ 0.54
CASC4-202ENST00000345795 MRS2Q9HD23 443 aa18.45■□□□□ 0.54
CASC4-202ENST00000345795 LRRC9Q6ZRR7 1453 aa18.45■□□□□ 0.54
CASC4-202ENST00000345795 HSPA5P11021 654 aaKnown RBP18.44■□□□□ 0.54
CASC4-202ENST00000345795 PKD2Q13563 968 aa18.43■□□□□ 0.54
CASC4-202ENST00000345795 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.54
CASC4-202ENST00000345795 DCAF11Q8TEB1 546 aa18.39■□□□□ 0.53
CASC4-202ENST00000345795 ERICH3Q5RHP9 1530 aa18.38■□□□□ 0.53
CASC4-202ENST00000345795 ZNF608Q9ULD9 1512 aaPredicted RBP18.37■□□□□ 0.53
CASC4-202ENST00000345795 SUPT16HQ9Y5B9 1047 aaKnown RBP18.35■□□□□ 0.53
CASC4-202ENST00000345795 CLSPNQ9HAW4 1339 aa18.35■□□□□ 0.53
CASC4-202ENST00000345795 CARD11Q9BXL7 1154 aa18.33■□□□□ 0.52
CASC4-202ENST00000345795 FGD6Q6ZV73 1430 aa18.32■□□□□ 0.52
CASC4-202ENST00000345795 RRBP1Q9P2E9 1410 aaKnown RBP18.3■□□□□ 0.52
CASC4-202ENST00000345795 BCL11AQ9H165 835 aa18.29■□□□□ 0.52
CASC4-202ENST00000345795 CDK13Q14004 1512 aaKnown RBP18.29■□□□□ 0.52
CASC4-202ENST00000345795 CCDC18Q5T9S5 1454 aa18.28■□□□□ 0.52
CASC4-202ENST00000345795 NCOA2Q15596 1464 aa18.28■□□□□ 0.52
CASC4-202ENST00000345795 ERICH6Q7L0X2 663 aa18.27■□□□□ 0.52
CASC4-202ENST00000345795 NUP155O75694 1391 aa18.26■□□□□ 0.51
CASC4-202ENST00000345795 TMC1Q8TDI8 760 aa18.26■□□□□ 0.51
CASC4-202ENST00000345795 PCF11O94913 1555 aaKnown RBP18.26■□□□□ 0.51
CASC4-202ENST00000345795 BIVM-ERCC5R4GMW8 1640 aa18.26■□□□□ 0.51
CASC4-202ENST00000345795 PRG4Q92954 1404 aaPredicted RBP18.24■□□□□ 0.51
CASC4-202ENST00000345795 DNMBPQ6XZF7 1577 aa18.24■□□□□ 0.51
CASC4-202ENST00000345795 NUTM2DQ5VT03 806 aaPredicted RBP18.24■□□□□ 0.51
CASC4-202ENST00000345795 TIAM1Q13009 1591 aa18.23■□□□□ 0.51
CASC4-202ENST00000345795 CASKIN1Q8WXD9 1431 aa18.23■□□□□ 0.51
CASC4-202ENST00000345795 CC2D1BQ5T0F9 858 aaKnown RBP18.22■□□□□ 0.51
CASC4-202ENST00000345795 ABCA10Q8WWZ4 1543 aa18.22■□□□□ 0.51
CASC4-202ENST00000345795 NPM1P06748 294 aaKnown RBP eCLIP18.22■□□□□ 0.51
CASC4-202ENST00000345795 PRDM2Q13029 1718 aa18.21■□□□□ 0.51
CASC4-202ENST00000345795 MYOM3Q5VTT5 1437 aa18.19■□□□□ 0.5
CASC4-202ENST00000345795 SNAPC4Q5SXM2 1469 aa18.19■□□□□ 0.5
CASC4-202ENST00000345795 PTPRKQ15262 1439 aa18.19■□□□□ 0.5
CASC4-202ENST00000345795 TNNT2P45379 298 aaPredicted RBP18.18■□□□□ 0.5
CASC4-202ENST00000345795 CCDC184Q52MB2 194 aa18.18■□□□□ 0.5
CASC4-202ENST00000345795 SAFB2Q14151 953 aaKnown RBP eCLIP18.17■□□□□ 0.5
CASC4-202ENST00000345795 NBPF8Q3BBV2 869 aa18.16■□□□□ 0.5
CASC4-202ENST00000345795 WDR97A6NE52 1622 aa18.16■□□□□ 0.5
CASC4-202ENST00000345795 GGT6Q6P531 493 aa18.16■□□□□ 0.5
CASC4-202ENST00000345795 CARMIL2Q6F5E8 1435 aa18.15■□□□□ 0.5
CASC4-202ENST00000345795 PLB1Q6P1J6 1458 aa18.14■□□□□ 0.49
CASC4-202ENST00000345795 GRIN2BQ13224 1484 aa18.13■□□□□ 0.49
CASC4-202ENST00000345795 PLEKHG5O94827 1062 aa18.12■□□□□ 0.49
CASC4-202ENST00000345795 PTPRGP23470 1445 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms