RNA–Protein interactions for RNA: ENST00000345392.2

VHL-202, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best) BASIC

Gene VHL, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-202ENST00000345392 FKBP8Q14318 412 aa25.43■■□□□ 1.66
VHL-202ENST00000345392 IGF1RP08069 1367 aa25.43■■□□□ 1.66
VHL-202ENST00000345392 P3H3Q8IVL6 736 aa25.42■■□□□ 1.66
VHL-202ENST00000345392 FANCD2Q9BXW9 1451 aa25.42■■□□□ 1.66
VHL-202ENST00000345392 LAMC3Q9Y6N6 1575 aa25.41■■□□□ 1.66
VHL-202ENST00000345392 MAPKBP1O60336 1514 aa25.37■■□□□ 1.65
VHL-202ENST00000345392 ATP1B4Q9UN42 357 aaPredicted RBP25.37■■□□□ 1.65
VHL-202ENST00000345392 SIN3AQ96ST3 1273 aa25.36■■□□□ 1.65
VHL-202ENST00000345392 FGD5Q6ZNL6 1462 aa25.34■■□□□ 1.65
VHL-202ENST00000345392 CARMIL1Q5VZK9 1371 aa25.34■■□□□ 1.65
VHL-202ENST00000345392 KIF21AQ7Z4S6 1674 aa25.32■■□□□ 1.64
VHL-202ENST00000345392 PDS5BQ9NTI5 1447 aa25.31■■□□□ 1.64
VHL-202ENST00000345392 PRDM2Q13029 1718 aa25.31■■□□□ 1.64
VHL-202ENST00000345392 HIRIP3Q9BW71 556 aaPredicted RBP25.31■■□□□ 1.64
VHL-202ENST00000345392 WDR97A6NE52 1622 aa25.28■■□□□ 1.64
VHL-202ENST00000345392 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
VHL-202ENST00000345392 FAM50AQ14320 339 aaKnown RBP25.27■■□□□ 1.64
VHL-202ENST00000345392 SETD5Q9C0A6 1442 aa25.25■■□□□ 1.63
VHL-202ENST00000345392 TRIM52Q96A61 297 aa25.25■■□□□ 1.63
VHL-202ENST00000345392 TIAM1Q13009 1591 aa25.24■■□□□ 1.63
VHL-202ENST00000345392 PHLDB1Q86UU1 1377 aa25.23■■□□□ 1.63
VHL-202ENST00000345392 PPP1R15AO75807 674 aaPredicted RBP25.22■■□□□ 1.63
VHL-202ENST00000345392 NEFLP07196 543 aa25.19■■□□□ 1.62
VHL-202ENST00000345392 RBM19Q9Y4C8 960 aaKnown RBP25.18■■□□□ 1.62
VHL-202ENST00000345392 LRRC9Q6ZRR7 1453 aa25.17■■□□□ 1.62
VHL-202ENST00000345392 RAD54L2Q9Y4B4 1467 aa25.17■■□□□ 1.62
VHL-202ENST00000345392 FHOD3Q2V2M9 1422 aa25.14■■□□□ 1.62
VHL-202ENST00000345392 URB2Q14146 1524 aaKnown RBP25.13■■□□□ 1.61
VHL-202ENST00000345392 PCF11O94913 1555 aaKnown RBP25.12■■□□□ 1.61
VHL-202ENST00000345392 ANP32CO43423 234 aa25.1■■□□□ 1.61
VHL-202ENST00000345392 BCL11AQ9H165 835 aa25.1■■□□□ 1.61
VHL-202ENST00000345392 TOPBP1Q92547 1522 aa25.07■■□□□ 1.6
VHL-202ENST00000345392 CCER2I3L3R5 266 aa25.06■■□□□ 1.6
VHL-202ENST00000345392 FHAD1B1AJZ9 1412 aa25.03■■□□□ 1.6
VHL-202ENST00000345392 MAP3K1Q13233 1512 aa25.03■■□□□ 1.6
VHL-202ENST00000345392 MRC2Q9UBG0 1479 aa25.02■■□□□ 1.6
VHL-202ENST00000345392 TIMELESSQ9UNS1 1208 aa25.01■■□□□ 1.59
VHL-202ENST00000345392 DNMBPQ6XZF7 1577 aa25■■□□□ 1.59
VHL-202ENST00000345392 POLA1P09884 1462 aaPredicted RBP25■■□□□ 1.59
VHL-202ENST00000345392 CFAP43Q8NDM7 1665 aa24.97■■□□□ 1.59
VHL-202ENST00000345392 THOC2Q8NI27 1593 aaKnown RBP24.91■■□□□ 1.58
VHL-202ENST00000345392 ABCA10Q8WWZ4 1543 aa24.91■■□□□ 1.58
VHL-202ENST00000345392 MSH5O43196 834 aa24.91■■□□□ 1.58
VHL-202ENST00000345392 IRX6P78412 446 aaPredicted RBP24.9■■□□□ 1.58
VHL-202ENST00000345392 TONSLQ96HA7 1378 aa24.89■■□□□ 1.57
VHL-202ENST00000345392 TDRD9Q8NDG6 1382 aaKnown RBP24.87■■□□□ 1.57
VHL-202ENST00000345392 FYCO1Q9BQS8 1478 aa24.86■■□□□ 1.57
VHL-202ENST00000345392 CASKIN1Q8WXD9 1431 aa24.85■■□□□ 1.57
VHL-202ENST00000345392 HNRNPUQ00839 825 aaKnown RBP eCLIP24.85■■□□□ 1.57
VHL-202ENST00000345392 WDR62O43379 1518 aa24.84■■□□□ 1.57
VHL-202ENST00000345392 MTUS2Q5JR59 1369 aa24.8■■□□□ 1.56
VHL-202ENST00000345392 EFCAB5A4FU69 1503 aa24.79■■□□□ 1.56
VHL-202ENST00000345392 CTTNBP2Q8WZ74 1663 aa24.78■■□□□ 1.56
VHL-202ENST00000345392 FGD6Q6ZV73 1430 aa24.78■■□□□ 1.56
VHL-202ENST00000345392 PTPRKQ15262 1439 aa24.77■■□□□ 1.56
VHL-202ENST00000345392 CUL7Q14999 1698 aa24.75■■□□□ 1.55
VHL-202ENST00000345392 SNAPC4Q5SXM2 1469 aa24.75■■□□□ 1.55
VHL-202ENST00000345392 CDK11AQ9UQ88 783 aaPredicted RBP24.74■■□□□ 1.55
VHL-202ENST00000345392 FMN1Q68DA7 1419 aa24.73■■□□□ 1.55
VHL-202ENST00000345392 CCDC18Q5T9S5 1454 aa24.73■■□□□ 1.55
VHL-202ENST00000345392 ZNF608Q9ULD9 1512 aaPredicted RBP24.72■■□□□ 1.55
VHL-202ENST00000345392 AQRO60306 1485 aaKnown RBP eCLIP24.71■■□□□ 1.552e-7■■■■■ 29
VHL-202ENST00000345392 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.71■■□□□ 1.55
VHL-202ENST00000345392 ARID3CA6NKF2 412 aa24.7■■□□□ 1.54
VHL-202ENST00000345392 LRRIQ1Q96JM4 1722 aa24.69■■□□□ 1.54
VHL-202ENST00000345392 FANCIQ9NVI1 1328 aa24.68■■□□□ 1.54
VHL-202ENST00000345392 TARBP1Q13395 1621 aaKnown RBP24.67■■□□□ 1.54
VHL-202ENST00000345392 UACAQ9BZF9 1416 aa24.67■■□□□ 1.54
VHL-202ENST00000345392 CHIC2Q9UKJ5 165 aa24.67■■□□□ 1.54
VHL-202ENST00000345392 GAPVD1Q14C86 1478 aa24.65■■□□□ 1.54
VHL-202ENST00000345392 NCOA2Q15596 1464 aa24.65■■□□□ 1.54
VHL-202ENST00000345392 ERICH6Q7L0X2 663 aa24.64■■□□□ 1.54
VHL-202ENST00000345392 RRP7BPQ9NSQ0 103 aa24.64■■□□□ 1.53
VHL-202ENST00000345392 WASHC2AQ641Q2 1341 aa24.63■■□□□ 1.53
VHL-202ENST00000345392 HFM1A2PYH4 1435 aa24.63■■□□□ 1.53
VHL-202ENST00000345392 HSPA5P11021 654 aaKnown RBP24.62■■□□□ 1.53
VHL-202ENST00000345392 CCDC184Q52MB2 194 aa24.62■■□□□ 1.53
VHL-202ENST00000345392 IFT140Q96RY7 1462 aa24.61■■□□□ 1.53
VHL-202ENST00000345392 PTPN23Q9H3S7 1636 aa24.6■■□□□ 1.53
VHL-202ENST00000345392 ABCA5Q8WWZ7 1642 aa24.59■■□□□ 1.53
VHL-202ENST00000345392 NAIPQ13075 1403 aa24.59■■□□□ 1.53
VHL-202ENST00000345392 MYOM3Q5VTT5 1437 aa24.58■■□□□ 1.53
VHL-202ENST00000345392 SAMD9Q5K651 1589 aa24.58■■□□□ 1.53
VHL-202ENST00000345392 GRIN2BQ13224 1484 aa24.58■■□□□ 1.52
VHL-202ENST00000345392 KDM5BQ9UGL1 1544 aa24.57■■□□□ 1.52
VHL-202ENST00000345392 MAGI3Q5TCQ9 1506 aa24.55■■□□□ 1.52
VHL-202ENST00000345392 PPP4R2Q9NY27 417 aa24.54■■□□□ 1.52
VHL-202ENST00000345392 FAM9BQ8IZU0 186 aa24.53■■□□□ 1.52
VHL-202ENST00000345392 B4GALNT3Q6L9W6 998 aa24.51■■□□□ 1.51
VHL-202ENST00000345392 SUPT6HQ7KZ85 1726 aaKnown RBP24.49■■□□□ 1.51
VHL-202ENST00000345392 EIF4G2P78344 907 aaKnown RBP eCLIP24.49■■□□□ 1.51
VHL-202ENST00000345392 EIF4G3O43432 1585 aaKnown RBP24.49■■□□□ 1.51
VHL-202ENST00000345392 FBLN2P98095 1184 aa24.48■■□□□ 1.51
VHL-202ENST00000345392 FOXD1Q16676 465 aa24.48■■□□□ 1.51
VHL-202ENST00000345392 C11orf95C9JLR9 678 aaPredicted RBP24.47■■□□□ 1.51
VHL-202ENST00000345392 ERICH6BQ5W0A0 696 aa24.46■■□□□ 1.51
VHL-202ENST00000345392 EHBP1L1Q8N3D4 1523 aa24.46■■□□□ 1.51
VHL-202ENST00000345392 UGGT2Q9NYU1 1516 aa24.44■■□□□ 1.5
VHL-202ENST00000345392 PRKRIP1Q9H875 184 aaPredicted RBP24.43■■□□□ 1.5
VHL-202ENST00000345392 MRS2Q9HD23 443 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms